Wall clock time and date at job start Sun Mar 29 2020 22:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 O 1.42900 * 109.47498 * 174.99804 * 4 2 1 6 6 C 1.42902 * 114.00241 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.27236 * 27.91639 * 6 5 4 8 8 C 1.54596 * 110.31025 * 265.71745 * 6 5 4 9 9 C 1.54930 * 102.92163 * 219.12508 * 8 6 5 10 10 N 1.48535 * 103.22748 * 37.41562 * 9 8 6 11 11 C 1.46907 * 110.99761 * 200.27794 * 10 9 8 12 12 C 1.53003 * 109.46969 * 287.39496 * 11 10 9 13 13 C 1.50698 * 109.46495 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00516 * 359.97438 * 13 12 11 15 15 C 1.37888 * 119.99580 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99844 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99821 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46832 * 90.00622 * 17 15 13 19 19 H 1.48499 * 109.46755 * 209.99947 * 17 15 13 20 20 H 1.48491 * 109.47267 * 330.00225 * 17 15 13 21 21 C 1.47900 * 105.81878 * 320.79058 * 10 9 8 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 31 31 H 1.08994 * 110.72313 * 337.48901 * 8 6 5 32 32 H 1.09006 * 110.71881 * 100.76893 * 8 6 5 33 33 H 1.09002 * 110.67189 * 278.97811 * 9 8 6 34 34 H 1.09004 * 110.66661 * 155.85359 * 9 8 6 35 35 H 1.08996 * 109.47305 * 47.39819 * 11 10 9 36 36 H 1.09004 * 109.46841 * 167.39792 * 11 10 9 37 37 H 1.08996 * 109.47371 * 300.00282 * 12 11 10 38 38 H 1.08994 * 109.47135 * 60.00451 * 12 11 10 39 39 H 0.97001 * 119.99870 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.91576 * 265.97339 * 21 10 9 41 41 H 1.09002 * 109.91331 * 144.68288 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 8 3.4642 -0.8238 1.1919 6 6 4.0451 -1.4846 2.3179 7 1 3.3372 -2.1944 2.7459 8 6 4.4806 -0.4504 3.3812 9 6 5.8227 -1.0277 3.8969 10 7 6.4451 -1.5884 2.6703 11 6 7.4722 -2.5828 3.0085 12 6 8.7032 -1.8722 3.5747 13 6 9.7569 -2.8924 3.9211 14 1 9.5674 -3.9424 3.7545 15 6 10.9627 -2.4851 4.4517 16 7 11.8825 -3.3752 4.7535 17 14 11.2902 -0.6688 4.7405 18 1 10.8460 -0.2971 6.1079 19 1 12.7440 -0.3999 4.6022 20 1 10.5409 0.1343 3.7412 21 6 5.3411 -2.2062 1.9041 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.7517 -0.1584 2.1369 30 1 1.6055 -1.7198 1.2950 31 1 4.6310 0.5292 2.9275 32 1 3.7493 -0.3950 4.1876 33 1 5.6466 -1.8129 4.6322 34 1 6.4450 -0.2379 4.3176 35 1 7.0773 -3.2742 3.7529 36 1 7.7521 -3.1355 2.1116 37 1 9.0981 -1.1808 2.8304 38 1 8.4233 -1.3196 4.4715 39 1 12.7308 -3.0887 5.1265 40 1 5.2693 -3.2665 2.1460 41 1 5.5131 -2.0771 0.8355 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119929404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:58 Heat of formation + Delta-G solvation = -62.519124 kcal Electronic energy + Delta-G solvation = -17497.110491 eV Core-core repulsion = 14797.292632 eV Total energy + Delta-G solvation = -2699.817858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.32450 -37.46557 -35.09599 -33.28976 -31.52823 -29.12078 -28.19674 -27.37403 -25.90825 -24.28160 -21.51827 -20.80980 -20.30644 -19.89614 -17.12206 -16.84291 -15.97102 -15.37920 -14.68514 -14.59691 -14.22989 -14.03779 -13.95625 -13.02905 -12.93184 -12.76382 -12.51914 -12.43057 -12.24446 -12.03544 -11.62835 -11.36388 -11.26585 -11.17618 -11.02108 -10.84759 -10.81812 -10.56582 -9.92025 -9.83664 -9.72545 -9.49786 -9.18190 -8.50434 -7.92789 -6.01958 -3.99985 3.34489 3.41992 3.49322 3.54072 4.38788 4.49303 4.58670 4.66063 4.78274 4.85319 4.90765 5.11029 5.22889 5.25200 5.32932 5.35834 5.45953 5.47573 5.61776 5.65537 5.69629 5.75840 5.83039 5.88629 5.96835 6.03314 6.09611 6.15462 6.20769 6.29440 6.34628 6.78862 7.16107 7.22198 7.26710 7.52104 7.64934 7.87159 8.55556 9.02030 9.60801 11.11437 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.052334 B = 0.003907 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.895897 B = 7165.816381 C = 7379.048168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.065 3.935 5 O -0.372 6.372 6 C 0.081 3.919 7 H 0.063 0.937 8 C -0.144 4.144 9 C 0.038 3.962 10 N -0.516 5.516 11 C 0.061 3.939 12 C -0.005 4.005 13 C -0.522 4.522 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.262 1.262 21 C 0.038 3.962 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.010 0.990 39 H 0.263 0.737 40 H 0.049 0.951 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.671 7.016 -6.445 24.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.012 4.012 5 O -0.291 6.291 6 C 0.023 3.977 7 H 0.081 0.919 8 C -0.183 4.183 9 C -0.090 4.090 10 N -0.241 5.241 11 C -0.066 4.066 12 C -0.042 4.042 13 C -0.560 4.560 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.707 3.293 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.187 1.187 21 C -0.091 4.091 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.028 0.972 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.113 7.459 -6.841 24.319 hybrid contribution -0.211 0.035 1.001 1.023 sum -22.325 7.493 -5.840 24.262 Atomic orbital electron populations 1.21790 0.94547 1.01859 1.02130 1.21092 0.95231 0.97074 0.98011 1.21784 1.02268 0.94946 1.01177 1.22590 0.81875 0.98841 0.97887 1.87973 1.19254 1.78792 1.43059 1.22986 0.94653 0.93432 0.86620 0.91933 1.23026 0.97113 1.00279 0.97852 1.23161 0.94027 0.99292 0.92513 1.64866 1.09514 1.32668 1.17078 1.22326 0.92417 0.92566 0.99251 1.19503 0.92489 0.96629 0.95621 1.21102 0.98461 0.94558 1.41880 0.91166 1.24998 0.95930 0.97568 0.94903 1.69916 1.06596 1.33697 1.44183 0.86760 0.77273 0.86150 0.79077 1.20396 1.21429 1.18660 1.22898 0.89347 0.95955 1.00856 0.92581 0.92608 0.92091 0.90382 0.91554 0.92959 0.93016 0.93563 0.93676 0.89794 0.91480 0.93756 0.89767 0.95295 0.91420 0.95665 0.97178 0.92753 0.93286 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 2 C -0.10 -0.83 3.16 -90.63 -0.29 -1.12 16 3 C -0.14 -1.29 9.09 37.16 0.34 -0.95 16 4 C 0.06 0.64 5.16 37.15 0.19 0.83 16 5 O -0.37 -4.82 9.47 -35.23 -0.33 -5.15 16 6 C 0.08 1.05 3.48 -25.38 -0.09 0.97 16 7 H 0.06 0.71 7.81 -51.93 -0.41 0.30 16 8 C -0.14 -1.88 6.80 -24.87 -0.17 -2.05 16 9 C 0.04 0.61 5.91 -1.90 -0.01 0.60 16 10 N -0.52 -9.38 5.24 -230.45 -1.21 -10.59 16 11 C 0.06 1.29 4.64 -3.82 -0.02 1.27 16 12 C 0.00 -0.11 4.13 -27.88 -0.12 -0.23 16 13 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 17 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 21 C 0.04 0.57 6.48 -2.76 -0.02 0.56 16 22 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.71 7.82 -51.93 -0.41 0.30 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.41 8.10 -51.93 -0.42 -0.02 16 31 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.69 7.81 -51.93 -0.41 0.29 16 34 H 0.08 1.39 7.80 -51.93 -0.41 0.99 16 35 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 36 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 37 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 38 H 0.01 0.24 6.80 -51.93 -0.35 -0.11 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.05 0.71 7.77 -51.93 -0.40 0.31 16 41 H 0.09 1.37 7.96 -51.93 -0.41 0.95 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -31.23 324.58 -8.61 -39.84 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -7.80 Total: -4.64 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.26 Total: -14.38 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.44 Total: -38.14 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.33 Total: -5.15 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.23 -8.61 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119929404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.677 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds