Wall clock time and date at job start Sun Mar 29 2020 22:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 5 5 O 1.42900 * 109.47498 * 174.99804 * 4 2 1 6 6 C 1.42902 * 114.00241 * 179.97438 * 5 4 2 7 7 H 1.08998 * 110.27236 * 27.91639 * 6 5 4 8 8 C 1.54596 * 110.31025 * 265.71745 * 6 5 4 9 9 C 1.54930 * 102.92163 * 219.12508 * 8 6 5 10 10 N 1.48535 * 103.22748 * 37.41562 * 9 8 6 11 11 C 1.46907 * 110.99761 * 200.27794 * 10 9 8 12 12 C 1.53003 * 109.46969 * 287.39496 * 11 10 9 13 13 C 1.50698 * 109.46495 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00516 * 359.97438 * 13 12 11 15 15 C 1.37888 * 119.99580 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99844 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99821 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46832 * 90.00622 * 17 15 13 19 19 H 1.48499 * 109.46755 * 209.99947 * 17 15 13 20 20 H 1.48491 * 109.47267 * 330.00225 * 17 15 13 21 21 C 1.47900 * 105.81878 * 320.79058 * 10 9 8 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 31 31 H 1.08994 * 110.72313 * 337.48901 * 8 6 5 32 32 H 1.09006 * 110.71881 * 100.76893 * 8 6 5 33 33 H 1.09002 * 110.67189 * 278.97811 * 9 8 6 34 34 H 1.09004 * 110.66661 * 155.85359 * 9 8 6 35 35 H 1.08996 * 109.47305 * 47.39819 * 11 10 9 36 36 H 1.09004 * 109.46841 * 167.39792 * 11 10 9 37 37 H 1.08996 * 109.47371 * 300.00282 * 12 11 10 38 38 H 1.08994 * 109.47135 * 60.00451 * 12 11 10 39 39 H 0.97001 * 119.99870 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.91576 * 265.97339 * 21 10 9 41 41 H 1.09002 * 109.91331 * 144.68288 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 8 3.4642 -0.8238 1.1919 6 6 4.0451 -1.4846 2.3179 7 1 3.3372 -2.1944 2.7459 8 6 4.4806 -0.4504 3.3812 9 6 5.8227 -1.0277 3.8969 10 7 6.4451 -1.5884 2.6703 11 6 7.4722 -2.5828 3.0085 12 6 8.7032 -1.8722 3.5747 13 6 9.7569 -2.8924 3.9211 14 1 9.5674 -3.9424 3.7545 15 6 10.9627 -2.4851 4.4517 16 7 11.8825 -3.3752 4.7535 17 14 11.2902 -0.6688 4.7405 18 1 10.8460 -0.2971 6.1079 19 1 12.7440 -0.3999 4.6022 20 1 10.5409 0.1343 3.7412 21 6 5.3411 -2.2062 1.9041 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.7517 -0.1584 2.1369 30 1 1.6055 -1.7198 1.2950 31 1 4.6310 0.5292 2.9275 32 1 3.7493 -0.3950 4.1876 33 1 5.6466 -1.8129 4.6322 34 1 6.4450 -0.2379 4.3176 35 1 7.0773 -3.2742 3.7529 36 1 7.7521 -3.1355 2.1116 37 1 9.0981 -1.1808 2.8304 38 1 8.4233 -1.3196 4.4715 39 1 12.7308 -3.0887 5.1265 40 1 5.2693 -3.2665 2.1460 41 1 5.5131 -2.0771 0.8355 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119929404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:58 Heat of formation + Delta-G solvation = -82.878580 kcal Electronic energy + Delta-G solvation = -17497.993343 eV Core-core repulsion = 14797.292632 eV Total energy + Delta-G solvation = -2700.700711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.43474 -38.51544 -36.04927 -35.19096 -33.28565 -30.65429 -29.45279 -27.99015 -26.76761 -26.03577 -23.09444 -21.84500 -21.54172 -21.06110 -19.01004 -18.06157 -17.01848 -16.46432 -16.37994 -15.71168 -15.52177 -15.48431 -14.92627 -14.71607 -14.24431 -13.91292 -13.68936 -13.61132 -13.29102 -13.03536 -12.94578 -12.83418 -12.54724 -12.39719 -11.92514 -11.84273 -11.81806 -11.71778 -11.65066 -11.53129 -11.43248 -11.39271 -10.77445 -10.44552 -9.34113 -8.31273 -6.35590 1.34857 1.37873 1.51414 2.35920 2.65879 3.04250 3.08280 3.62123 3.72420 3.95141 4.00126 4.14218 4.20642 4.32054 4.37089 4.40294 4.53540 4.59114 4.64093 4.70122 4.77284 4.82351 4.85891 4.90517 4.96539 4.98655 5.03028 5.08030 5.15378 5.25112 5.26864 5.42121 5.43497 5.46500 5.61389 6.00346 6.09791 6.27490 6.37274 6.71736 7.29406 8.85410 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.052334 B = 0.003907 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.895897 B = 7165.816381 C = 7379.048168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.060 3.940 5 O -0.391 6.391 6 C 0.087 3.913 7 H 0.086 0.914 8 C -0.133 4.133 9 C 0.032 3.968 10 N -0.532 5.532 11 C 0.074 3.926 12 C 0.003 3.997 13 C -0.534 4.534 14 H 0.033 0.967 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.951 3.049 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.251 1.251 21 C 0.035 3.965 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.018 0.982 38 H 0.017 0.983 39 H 0.267 0.733 40 H 0.056 0.944 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.862 8.707 -6.230 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.017 4.017 5 O -0.310 6.310 6 C 0.029 3.971 7 H 0.104 0.896 8 C -0.171 4.171 9 C -0.096 4.096 10 N -0.257 5.257 11 C -0.054 4.054 12 C -0.035 4.035 13 C -0.573 4.573 14 H 0.052 0.948 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.774 3.226 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.175 1.175 21 C -0.093 4.093 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.334 9.150 -6.634 26.830 hybrid contribution 0.444 -0.568 0.888 1.144 sum -23.890 8.582 -5.745 26.027 Atomic orbital electron populations 1.21756 0.92755 1.02519 1.02818 1.21121 0.96647 0.96518 0.97182 1.21763 1.00767 0.95496 1.01983 1.22799 0.80257 0.99829 0.98783 1.87958 1.21155 1.78809 1.43070 1.22898 0.93959 0.93644 0.86587 0.89625 1.22968 0.96000 0.99590 0.98553 1.23244 0.95361 0.99136 0.91828 1.64746 1.10500 1.31959 1.18480 1.22005 0.92146 0.92670 0.98544 1.19359 0.92868 0.95508 0.95716 1.21419 1.00051 0.93980 1.41829 0.94838 1.25969 0.95592 1.02883 0.94541 1.70057 1.07339 1.36299 1.45339 0.85637 0.77465 0.79699 0.79750 1.18867 1.20753 1.17518 1.22924 0.89774 0.96631 0.99940 0.91933 0.91982 0.91392 0.91345 0.93799 0.91989 0.92423 0.92594 0.92552 0.90509 0.88601 0.93389 0.90650 0.95488 0.92270 0.96401 0.96459 0.92377 0.92620 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 71.98 0.66 -0.86 16 2 C -0.10 -1.49 3.16 -10.80 -0.03 -1.52 16 3 C -0.14 -2.33 9.09 71.98 0.65 -1.68 16 4 C 0.06 1.03 5.16 71.98 0.37 1.40 16 5 O -0.39 -9.37 9.47 -148.98 -1.41 -10.78 16 6 C 0.09 2.05 3.48 31.47 0.11 2.16 16 7 H 0.09 1.64 7.81 -2.39 -0.02 1.62 16 8 C -0.13 -3.11 6.80 31.80 0.22 -2.90 16 9 C 0.03 0.96 5.91 86.65 0.51 1.48 16 10 N -0.53 -18.86 5.24 -883.00 -4.63 -23.49 16 11 C 0.07 3.12 4.64 86.30 0.40 3.52 16 12 C 0.00 0.16 4.13 29.85 0.12 0.29 16 13 C -0.53 -31.80 9.66 25.60 0.25 -31.55 16 14 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 15 C 0.01 0.43 5.47 84.66 0.46 0.89 16 16 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 17 Si 0.95 45.69 27.47 68.60 1.88 47.57 16 18 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.25 -11.55 6.54 99.48 0.65 -10.90 16 21 C 0.04 1.03 6.48 86.45 0.56 1.59 16 22 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 0.90 7.82 -2.39 -0.02 0.89 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 32 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.05 1.41 7.81 -2.39 -0.02 1.39 16 34 H 0.08 2.38 7.80 -2.39 -0.02 2.37 16 35 H 0.03 1.12 7.83 -2.39 -0.02 1.11 16 36 H 0.06 2.53 8.08 -2.38 -0.02 2.51 16 37 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 38 H 0.02 0.82 6.80 -2.39 -0.02 0.81 16 39 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.06 1.55 7.77 -2.39 -0.02 1.53 16 41 H 0.08 2.43 7.96 -2.39 -0.02 2.41 16 Total: -1.00 -67.55 324.58 1.32 -66.23 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.89 Total: 7.95 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.29 Total: -27.18 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -4.33 Total: -83.79 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.41 Total: -10.78 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.88 Total: 47.57 kcal Total: -67.55 1.32 -66.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119929404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.651 kcal (2) G-P(sol) polarization free energy of solvation -67.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds