Wall clock time and date at job start Sun Mar 29 2020 22:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46899 * 2 1 4 4 C 1.52996 * 109.46916 * 119.99838 * 2 1 3 5 5 O 1.42895 * 109.47351 * 65.00075 * 4 2 1 6 6 C 1.42903 * 114.00274 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.62712 * 330.70022 * 6 5 4 8 8 C 1.55142 * 110.70426 * 93.80576 * 6 5 4 9 9 C 1.55380 * 101.43737 * 154.11513 * 8 6 5 10 10 N 1.47844 * 104.83918 * 322.95685 * 9 8 6 11 11 C 1.46900 * 110.99982 * 146.36889 * 10 9 8 12 12 C 1.52996 * 109.47365 * 49.15253 * 11 10 9 13 13 C 1.50696 * 109.47426 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99812 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47610 * 59.99497 * 17 15 13 19 19 H 1.48500 * 109.47177 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46748 * 299.99298 * 17 15 13 21 21 C 1.47443 * 108.56494 * 24.09964 * 10 9 8 22 22 H 1.08998 * 109.47586 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47321 * 300.00086 * 1 2 3 24 24 H 1.08999 * 109.46904 * 60.00047 * 1 2 3 25 25 H 1.08993 * 109.47195 * 240.00023 * 2 1 3 26 26 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47304 * 299.99708 * 3 2 1 28 28 H 1.08995 * 109.47489 * 60.00445 * 3 2 1 29 29 H 1.09001 * 109.47286 * 304.99960 * 4 2 1 30 30 H 1.08998 * 109.47624 * 185.00218 * 4 2 1 31 31 H 1.09003 * 110.98867 * 272.30087 * 8 6 5 32 32 H 1.08996 * 110.99420 * 36.12147 * 8 6 5 33 33 H 1.08999 * 110.35214 * 204.10929 * 9 8 6 34 34 H 1.09007 * 110.44781 * 81.84802 * 9 8 6 35 35 H 1.08999 * 109.47331 * 169.15585 * 11 10 9 36 36 H 1.09000 * 109.47057 * 289.15853 * 11 10 9 37 37 H 1.08998 * 109.47676 * 300.00293 * 12 11 10 38 38 H 1.09004 * 109.47227 * 60.00037 * 12 11 10 39 39 H 0.96997 * 119.99873 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.88254 * 239.60085 * 21 10 9 41 41 H 1.09003 * 109.88840 * 118.42215 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 8 1.6619 -2.0981 1.1921 6 6 2.0923 -2.8662 2.3176 7 1 3.0113 -2.4545 2.7348 8 6 0.9796 -2.9285 3.3970 9 6 1.3278 -4.2578 4.1221 10 7 1.7926 -5.1635 3.0500 11 6 2.8398 -6.0683 3.5424 12 6 2.3818 -6.7139 4.8517 13 6 3.4564 -7.6417 5.3572 14 1 4.3745 -7.7588 4.8005 15 6 3.2676 -8.3410 6.5304 16 7 2.1499 -8.1981 7.2085 17 14 4.5999 -9.4905 7.1573 18 1 5.8467 -8.7199 7.3957 19 1 4.1548 -10.1181 8.4274 20 1 4.8571 -10.5479 6.1468 21 6 2.2858 -4.3463 1.9262 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6053 -0.2617 2.1370 30 1 3.1262 -0.6443 1.2953 31 1 1.0476 -2.0794 4.0772 32 1 -0.0075 -2.9808 2.9377 33 1 0.4423 -4.6678 4.6079 34 1 2.1203 -4.0967 4.8530 35 1 3.0276 -6.8446 2.8007 36 1 3.7556 -5.5034 3.7169 37 1 2.1941 -5.9377 5.5935 38 1 1.4661 -7.2789 4.6774 39 1 2.0172 -8.6898 8.0340 40 1 1.7133 -4.5698 1.0261 41 1 3.3431 -4.5497 1.7558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119929584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:00 Heat of formation + Delta-G solvation = -65.231296 kcal Electronic energy + Delta-G solvation = -17482.241047 eV Core-core repulsion = 14782.305580 eV Total energy + Delta-G solvation = -2699.935467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.25044 -37.45378 -35.06334 -33.27780 -31.29782 -28.92005 -27.83648 -27.35720 -25.82331 -24.23126 -21.82253 -20.86193 -20.30189 -19.57929 -17.09269 -16.39389 -15.89603 -15.37170 -14.74520 -14.45099 -14.24697 -14.14937 -13.73418 -13.07069 -12.89738 -12.74531 -12.41274 -12.28143 -12.04479 -11.87973 -11.55443 -11.24113 -11.04996 -10.99353 -10.95177 -10.77620 -10.76907 -10.53289 -10.46445 -9.96462 -9.52189 -9.27397 -9.13795 -8.35261 -7.68618 -5.99856 -4.02414 3.33446 3.37777 3.40146 3.56345 4.41689 4.56803 4.62111 4.68886 4.84727 4.90902 5.05083 5.15721 5.27087 5.28923 5.35950 5.38656 5.50812 5.61728 5.63902 5.71441 5.72365 5.83459 5.88703 6.02369 6.04806 6.16151 6.16581 6.26698 6.35085 6.44259 6.51679 6.92986 7.27794 7.50554 7.54741 7.74532 7.86869 8.06439 8.42898 9.04283 9.61165 11.11547 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063745 B = 0.003621 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.146949 B = 7730.907466 C = 7855.155902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.374 6.374 6 C 0.069 3.931 7 H 0.064 0.936 8 C -0.151 4.151 9 C 0.049 3.951 10 N -0.526 5.526 11 C 0.056 3.944 12 C 0.022 3.978 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.047 3.953 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.082 0.918 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 17.234 -11.825 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.292 6.292 6 C 0.010 3.990 7 H 0.082 0.918 8 C -0.189 4.189 9 C -0.078 4.078 10 N -0.252 5.252 11 C -0.071 4.071 12 C -0.015 4.015 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.081 4.081 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.847 16.775 -11.985 20.700 hybrid contribution 1.600 -0.064 0.988 1.881 sum -0.247 16.712 -10.998 20.007 Atomic orbital electron populations 1.21781 0.94534 1.02612 1.01203 1.21094 0.96838 0.95469 0.97986 1.21790 1.01030 0.95396 1.02132 1.22586 0.98107 0.82586 0.97872 1.87895 1.78417 1.19720 1.43184 1.23424 0.96217 0.92709 0.86646 0.91822 1.23299 0.99937 0.98110 0.97567 1.22994 1.00834 0.90267 0.93733 1.63764 1.36844 1.17397 1.07154 1.22554 0.90567 0.94342 0.99652 1.19184 0.97129 0.95472 0.89702 1.21152 1.02497 1.25253 1.07273 0.92803 1.24997 0.95608 0.96942 0.96768 1.69958 1.24853 1.42301 1.16158 0.86643 0.82026 0.81112 0.78126 1.20309 1.21260 1.20190 1.22829 0.99363 0.89305 0.96652 0.91650 0.92964 0.92969 0.90426 0.92585 0.92097 0.92543 0.93495 0.93648 0.91373 0.90019 0.89893 0.92979 0.91799 0.96114 0.96290 0.95683 0.92920 0.89983 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.09 37.16 0.34 -0.95 16 2 C -0.10 -0.86 3.16 -90.62 -0.29 -1.14 16 3 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 4 C 0.07 0.69 5.17 37.16 0.19 0.88 16 5 O -0.37 -5.01 9.61 -35.23 -0.34 -5.35 16 6 C 0.07 0.97 3.40 -24.91 -0.08 0.89 16 7 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 8 C -0.15 -2.16 6.84 -24.33 -0.17 -2.33 16 9 C 0.05 0.87 5.32 -2.04 -0.01 0.86 16 10 N -0.53 -10.07 5.31 -230.94 -1.23 -11.30 16 11 C 0.06 1.21 4.76 -3.83 -0.02 1.20 16 12 C 0.02 0.59 4.64 -27.89 -0.13 0.46 16 13 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.05 0.75 6.65 -2.84 -0.02 0.74 16 22 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 8.11 -51.93 -0.42 0.03 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.05 0.98 7.02 -51.93 -0.36 0.61 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.02 0.44 7.96 -51.93 -0.41 0.03 16 37 H 0.02 0.52 6.47 -51.93 -0.34 0.18 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 41 H 0.06 0.87 7.49 -51.93 -0.39 0.48 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -30.10 326.38 -8.96 -39.06 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -7.77 Total: -4.03 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.25 Total: -13.77 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.49 Total: -37.58 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.34 Total: -5.35 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.10 -8.96 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119929584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.174 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds