Wall clock time and date at job start Sun Mar 29 2020 22:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46899 * 2 1 4 4 C 1.52996 * 109.46916 * 119.99838 * 2 1 3 5 5 O 1.42895 * 109.47351 * 65.00075 * 4 2 1 6 6 C 1.42903 * 114.00274 * 179.97438 * 5 4 2 7 7 H 1.09002 * 110.62712 * 330.70022 * 6 5 4 8 8 C 1.55142 * 110.70426 * 93.80576 * 6 5 4 9 9 C 1.55380 * 101.43737 * 154.11513 * 8 6 5 10 10 N 1.47844 * 104.83918 * 322.95685 * 9 8 6 11 11 C 1.46900 * 110.99982 * 146.36889 * 10 9 8 12 12 C 1.52996 * 109.47365 * 49.15253 * 11 10 9 13 13 C 1.50696 * 109.47426 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99812 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00075 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47610 * 59.99497 * 17 15 13 19 19 H 1.48500 * 109.47177 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46748 * 299.99298 * 17 15 13 21 21 C 1.47443 * 108.56494 * 24.09964 * 10 9 8 22 22 H 1.08998 * 109.47586 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47321 * 300.00086 * 1 2 3 24 24 H 1.08999 * 109.46904 * 60.00047 * 1 2 3 25 25 H 1.08993 * 109.47195 * 240.00023 * 2 1 3 26 26 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47304 * 299.99708 * 3 2 1 28 28 H 1.08995 * 109.47489 * 60.00445 * 3 2 1 29 29 H 1.09001 * 109.47286 * 304.99960 * 4 2 1 30 30 H 1.08998 * 109.47624 * 185.00218 * 4 2 1 31 31 H 1.09003 * 110.98867 * 272.30087 * 8 6 5 32 32 H 1.08996 * 110.99420 * 36.12147 * 8 6 5 33 33 H 1.08999 * 110.35214 * 204.10929 * 9 8 6 34 34 H 1.09007 * 110.44781 * 81.84802 * 9 8 6 35 35 H 1.08999 * 109.47331 * 169.15585 * 11 10 9 36 36 H 1.09000 * 109.47057 * 289.15853 * 11 10 9 37 37 H 1.08998 * 109.47676 * 300.00293 * 12 11 10 38 38 H 1.09004 * 109.47227 * 60.00037 * 12 11 10 39 39 H 0.96997 * 119.99873 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.88254 * 239.60085 * 21 10 9 41 41 H 1.09003 * 109.88840 * 118.42215 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 8 1.6619 -2.0981 1.1921 6 6 2.0923 -2.8662 2.3176 7 1 3.0113 -2.4545 2.7348 8 6 0.9796 -2.9285 3.3970 9 6 1.3278 -4.2578 4.1221 10 7 1.7926 -5.1635 3.0500 11 6 2.8398 -6.0683 3.5424 12 6 2.3818 -6.7139 4.8517 13 6 3.4564 -7.6417 5.3572 14 1 4.3745 -7.7588 4.8005 15 6 3.2676 -8.3410 6.5304 16 7 2.1499 -8.1981 7.2085 17 14 4.5999 -9.4905 7.1573 18 1 5.8467 -8.7199 7.3957 19 1 4.1548 -10.1181 8.4274 20 1 4.8571 -10.5479 6.1468 21 6 2.2858 -4.3463 1.9262 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6053 -0.2617 2.1370 30 1 3.1262 -0.6443 1.2953 31 1 1.0476 -2.0794 4.0772 32 1 -0.0075 -2.9808 2.9377 33 1 0.4423 -4.6678 4.6079 34 1 2.1203 -4.0967 4.8530 35 1 3.0276 -6.8446 2.8007 36 1 3.7556 -5.5034 3.7169 37 1 2.1941 -5.9377 5.5935 38 1 1.4661 -7.2789 4.6774 39 1 2.0172 -8.6898 8.0340 40 1 1.7133 -4.5698 1.0261 41 1 3.3431 -4.5497 1.7558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119929584.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:59 Heat of formation + Delta-G solvation = -83.982750 kcal Electronic energy + Delta-G solvation = -17483.054171 eV Core-core repulsion = 14782.305580 eV Total energy + Delta-G solvation = -2700.748591 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48641 -38.58588 -36.05639 -35.20916 -33.01186 -30.48056 -29.29457 -27.99443 -26.78912 -26.07363 -23.52688 -22.02046 -21.28857 -21.04451 -18.56684 -18.10770 -17.02286 -16.61792 -16.41338 -15.85155 -15.56338 -15.29036 -14.96439 -14.42656 -14.11280 -13.94081 -13.67905 -13.58787 -13.22673 -13.00814 -12.90951 -12.80190 -12.52823 -12.41029 -12.29803 -11.93923 -11.89721 -11.75369 -11.69421 -11.46261 -11.34633 -11.28044 -10.57040 -10.44795 -9.22581 -8.21080 -6.32790 1.39871 1.43273 1.51184 2.39402 2.57643 3.12015 3.12514 3.60277 3.73408 3.91213 3.97186 4.08118 4.18752 4.31268 4.40161 4.45842 4.54533 4.58577 4.61154 4.67848 4.76765 4.82800 4.88695 4.92465 4.98049 5.01905 5.04610 5.06995 5.11473 5.24052 5.42429 5.43267 5.45970 5.63031 5.76898 6.01577 6.15909 6.27353 6.31821 6.83580 7.36291 8.90880 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.063745 B = 0.003621 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.146949 B = 7730.907466 C = 7855.155902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.142 4.142 4 C 0.059 3.941 5 O -0.385 6.385 6 C 0.078 3.922 7 H 0.076 0.924 8 C -0.137 4.137 9 C 0.047 3.953 10 N -0.541 5.541 11 C 0.072 3.928 12 C 0.031 3.969 13 C -0.547 4.547 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.046 3.954 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.026 0.974 37 H 0.001 0.999 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.083 0.917 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 18.397 -12.477 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.018 4.018 5 O -0.303 6.303 6 C 0.019 3.981 7 H 0.094 0.906 8 C -0.176 4.176 9 C -0.080 4.080 10 N -0.266 5.266 11 C -0.055 4.055 12 C -0.006 4.006 13 C -0.586 4.586 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.082 4.082 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.019 0.981 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.620 17.957 -12.660 21.980 hybrid contribution 1.157 -0.387 1.155 1.680 sum 0.537 17.571 -11.504 21.009 Atomic orbital electron populations 1.21767 0.94639 1.01578 1.02023 1.21119 0.96749 0.96471 0.96970 1.21763 1.01341 0.93967 1.02858 1.22821 0.98830 0.81148 0.98982 1.87887 1.78595 1.21199 1.42649 1.23233 0.96496 0.91673 0.86693 0.90622 1.23217 1.00037 0.96664 0.97644 1.22942 0.99603 0.91910 0.93568 1.63648 1.36193 1.18564 1.08207 1.22215 0.91258 0.94817 0.97228 1.19005 0.95384 0.94551 0.91652 1.21595 1.03218 1.25916 1.07848 0.92114 1.25975 0.98096 0.98653 0.96936 1.70098 1.26997 1.43374 1.16641 0.85469 0.78970 0.78830 0.77587 1.19045 1.20763 1.19191 1.22834 0.99676 0.90466 0.95243 0.93555 0.92595 0.91756 0.91012 0.92093 0.91132 0.92089 0.92829 0.92794 0.89098 0.90054 0.91698 0.94251 0.91858 0.95542 0.98106 0.99104 0.92695 0.89900 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.09 71.98 0.65 -1.67 16 2 C -0.09 -1.51 3.16 -10.79 -0.03 -1.55 16 3 C -0.14 -1.65 9.19 71.98 0.66 -0.98 16 4 C 0.06 1.11 5.17 71.98 0.37 1.48 16 5 O -0.38 -9.62 9.61 -148.98 -1.43 -11.05 16 6 C 0.08 2.07 3.40 31.77 0.11 2.18 16 7 H 0.08 1.85 7.85 -2.39 -0.02 1.83 16 8 C -0.14 -3.77 6.84 32.15 0.22 -3.55 16 9 C 0.05 1.70 5.32 86.94 0.46 2.17 16 10 N -0.54 -20.81 5.31 -884.56 -4.70 -25.51 16 11 C 0.07 3.18 4.76 86.30 0.41 3.59 16 12 C 0.03 1.71 4.64 29.85 0.14 1.85 16 13 C -0.55 -31.69 9.11 25.60 0.23 -31.45 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 15 C 0.00 0.09 5.46 84.66 0.46 0.55 16 16 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 17 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 C 0.05 1.42 6.65 86.64 0.58 2.00 16 22 H 0.05 0.92 7.82 -2.39 -0.02 0.91 16 23 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.04 1.50 7.02 -2.38 -0.02 1.49 16 35 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.03 1.12 7.96 -2.39 -0.02 1.10 16 37 H 0.00 0.04 6.47 -2.39 -0.02 0.02 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.08 2.57 8.06 -2.39 -0.02 2.56 16 41 H 0.06 1.86 7.49 -2.39 -0.02 1.85 16 Total: -1.00 -64.67 326.38 1.39 -63.28 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.95 Total: 9.17 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.27 Total: -25.39 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -4.42 Total: -82.56 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.43 Total: -11.05 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.67 1.39 -63.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119929584.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.703 kcal (2) G-P(sol) polarization free energy of solvation -64.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds