Wall clock time and date at job start Sun Mar 29 2020 22:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47535 * 2 1 4 4 C 1.53000 * 109.46990 * 239.99627 * 2 1 3 5 5 C 1.50697 * 109.46904 * 60.00655 * 4 2 1 6 6 H 1.07998 * 120.00148 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00118 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00220 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99939 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47020 * 89.99472 * 9 7 5 11 11 H 1.48500 * 109.47082 * 209.99350 * 9 7 5 12 12 H 1.48503 * 109.46835 * 329.99645 * 9 7 5 13 13 C 1.53005 * 109.46917 * 120.00159 * 2 1 3 14 14 N 1.46898 * 109.47032 * 299.99618 * 13 2 1 15 15 C 1.46901 * 111.00128 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47452 * 180.02562 * 15 14 13 17 17 H 1.09004 * 110.74607 * 302.98324 * 16 15 14 18 18 C 1.55300 * 110.85128 * 179.28566 * 16 15 14 19 19 C 1.54940 * 100.94415 * 207.67291 * 18 16 15 20 20 O 1.43641 * 105.13614 * 36.44473 * 19 18 16 21 21 C 1.43245 * 109.97106 * 335.57089 * 20 19 18 22 22 H 1.09000 * 109.47036 * 300.00329 * 1 2 3 23 23 H 1.09001 * 109.46425 * 59.99485 * 1 2 3 24 24 H 1.08989 * 109.47176 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47228 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46990 * 300.00231 * 3 2 1 27 27 H 1.09008 * 109.46969 * 59.99977 * 3 2 1 28 28 H 1.09003 * 109.47207 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47410 * 300.00473 * 4 2 1 30 30 H 0.97001 * 120.00285 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.46938 * 179.97438 * 13 2 1 32 32 H 1.09002 * 109.47129 * 59.99743 * 13 2 1 33 33 H 1.00908 * 110.99694 * 56.05033 * 14 13 2 34 34 H 1.08998 * 109.47249 * 59.99704 * 15 14 13 35 35 H 1.09002 * 109.46736 * 300.00104 * 15 14 13 36 36 H 1.09007 * 111.12449 * 325.59565 * 18 16 15 37 37 H 1.09003 * 111.12579 * 89.71048 * 18 16 15 38 38 H 1.08997 * 110.31031 * 277.52940 * 19 18 16 39 39 H 1.08999 * 110.30948 * 155.35829 * 19 18 16 40 40 H 1.09000 * 109.82609 * 121.22500 * 21 20 19 41 41 H 1.08997 * 109.82839 * 242.19401 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4796 6 1 0.9166 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 1.4325 0.1381 -4.8058 9 14 2.9450 -2.0006 -3.9033 10 1 2.0863 -3.2113 -3.9493 11 1 3.7373 -1.9079 -5.1559 12 1 3.8650 -2.0900 -2.7410 13 6 2.0400 -0.7213 1.2493 14 7 1.5504 -0.0288 2.4487 15 6 2.0208 -0.6953 3.6704 16 6 1.4913 0.0526 4.8956 17 1 1.7995 1.0979 4.8729 18 6 1.9558 -0.6368 6.2074 19 6 0.8105 -0.2370 7.1713 20 8 -0.3805 -0.2602 6.3686 21 6 -0.0451 -0.0653 4.9897 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9563 0.8901 28 1 3.1300 -0.7218 -1.2490 29 1 1.6766 -1.7490 -1.2492 30 1 1.6674 -0.1929 -5.6868 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2493 33 1 0.5438 0.0413 2.4401 34 1 3.1107 -0.6956 3.6874 35 1 1.6569 -1.7226 3.6869 36 1 2.0071 -1.7189 6.0856 37 1 2.9118 -0.2362 6.5446 38 1 0.9809 0.7643 7.5665 39 1 0.7321 -0.9577 7.9853 40 1 -0.3873 -0.9171 4.4020 41 1 -0.5095 0.8497 4.6219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126661504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:53 Heat of formation + Delta-G solvation = -68.496066 kcal Electronic energy + Delta-G solvation = -17830.553377 eV Core-core repulsion = 15130.476339 eV Total energy + Delta-G solvation = -2700.077038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71979 -37.73386 -34.98958 -32.55932 -31.65959 -29.51296 -27.68094 -26.38497 -25.92669 -24.25219 -22.55514 -21.65019 -20.62983 -17.92363 -17.11596 -16.78677 -16.17630 -15.35024 -14.93987 -14.74151 -14.13218 -13.73722 -13.65807 -13.29353 -13.00505 -12.94605 -12.50606 -12.21713 -11.90676 -11.77652 -11.31784 -11.12681 -11.07481 -10.96698 -10.87661 -10.83219 -10.49492 -10.33553 -9.81963 -9.73100 -9.67676 -9.29518 -8.90625 -8.49682 -8.22318 -5.99911 -3.96132 3.31831 3.39712 3.43085 3.66092 4.09340 4.34699 4.48243 4.66260 4.74301 4.97328 5.05845 5.17206 5.32993 5.39654 5.44988 5.48366 5.57515 5.60267 5.64772 5.70689 5.80836 5.87539 6.02602 6.13414 6.23760 6.40418 6.58389 6.67712 6.76609 6.79496 7.06630 7.12707 7.17353 7.26547 7.32472 7.45361 7.57748 7.85386 8.59887 9.05998 9.63172 11.13206 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050138 B = 0.004287 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.329718 B = 6530.170150 C = 6739.247900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.117 4.117 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.687 5.687 15 C 0.068 3.932 16 C -0.119 4.119 17 H 0.095 0.905 18 C -0.152 4.152 19 C 0.051 3.949 20 O -0.387 6.387 21 C 0.053 3.947 22 H 0.035 0.965 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.015 0.985 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.339 0.661 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -1.638 20.934 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.050 4.050 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.319 5.319 15 C -0.061 4.061 16 C -0.138 4.138 17 H 0.113 0.887 18 C -0.190 4.190 19 C -0.025 4.025 20 O -0.307 6.307 21 C -0.024 4.024 22 H 0.054 0.946 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.158 0.842 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.196 -1.212 20.808 20.877 hybrid contribution 0.308 -1.675 -0.408 1.752 sum 1.504 -2.887 20.399 20.657 Atomic orbital electron populations 1.21790 0.95607 1.00478 1.00988 1.20429 0.95088 0.96219 0.93251 1.21611 0.99665 0.95479 1.00722 1.19629 0.96025 0.95229 0.93325 1.21138 1.31463 1.13229 0.88684 0.90408 1.25019 0.95800 0.96747 0.96026 1.69908 1.46130 1.40655 0.97828 0.86848 0.81305 0.83998 0.77508 1.20512 1.21537 1.19156 1.22144 0.99790 0.94672 0.89542 1.60568 1.16472 1.53707 1.01134 1.21888 1.00543 0.94729 0.88982 1.22778 0.94930 1.01573 0.94561 0.88712 1.23301 0.99347 1.01603 0.94762 1.23347 0.84140 1.00848 0.94187 1.88396 1.30448 1.94227 1.17617 1.23242 0.94743 1.01404 0.83006 0.94615 0.91080 0.94132 0.94228 0.92099 0.93679 0.96716 0.97415 0.92885 0.91536 0.95873 0.84163 0.90753 0.95341 0.90342 0.89765 0.92196 0.89927 0.91501 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.89 37.16 0.29 -2.10 16 2 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -13.98 8.20 -34.44 -0.28 -14.26 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.77 13.96 55.43 0.77 -27.00 16 9 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.07 1.08 4.65 -3.82 -0.02 1.06 16 14 N -0.69 -9.23 5.71 -113.78 -0.65 -9.88 16 15 C 0.07 0.76 5.07 -3.82 -0.02 0.74 16 16 C -0.12 -1.15 3.25 -88.68 -0.29 -1.44 16 17 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.15 -1.21 6.62 -24.49 -0.16 -1.37 16 19 C 0.05 0.44 7.78 38.18 0.30 0.74 16 20 O -0.39 -4.54 11.36 -35.23 -0.40 -4.94 16 21 C 0.05 0.56 6.59 37.88 0.25 0.81 16 22 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 23 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 24 H 0.04 0.72 8.14 -51.94 -0.42 0.29 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 27 H 0.04 0.77 7.60 -51.92 -0.39 0.37 16 28 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 29 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.34 4.42 5.98 -39.29 -0.24 4.18 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.32 8.07 -51.93 -0.42 -0.10 16 36 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.72 7.75 -51.93 -0.40 0.31 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -29.95 314.22 -7.49 -37.44 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.37 Total: -0.21 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 0.09 Total: -17.23 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.12 Total: -36.87 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.40 Total: -4.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.95 -7.49 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126661504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.054 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds