Wall clock time and date at job start Sun Mar 29 2020 22:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47151 * 2 1 4 4 C 1.52998 * 109.47231 * 240.00372 * 2 1 3 5 5 C 1.50701 * 109.47357 * 59.99828 * 4 2 1 6 6 H 1.07999 * 119.99687 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00007 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99960 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47211 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47075 * 119.99910 * 9 7 5 12 12 H 1.48504 * 109.47242 * 239.99777 * 9 7 5 13 13 C 1.53003 * 109.47284 * 120.00108 * 2 1 3 14 14 N 1.46903 * 109.46899 * 300.00454 * 13 2 1 15 15 C 1.46898 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.45399 * 54.29817 * 16 15 14 18 18 C 1.54506 * 110.51258 * 176.90137 * 16 15 14 19 19 C 1.54473 * 104.06202 * 118.64474 * 18 16 15 20 20 O 1.44427 * 104.80393 * 23.98322 * 19 18 16 21 21 C 1.44643 * 105.36539 * 319.56140 * 20 19 18 22 22 H 1.09004 * 109.47066 * 299.99897 * 1 2 3 23 23 H 1.09004 * 109.46990 * 59.99909 * 1 2 3 24 24 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47147 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47495 * 300.00396 * 3 2 1 27 27 H 1.09004 * 109.46784 * 59.99614 * 3 2 1 28 28 H 1.09006 * 109.47316 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47225 * 299.99691 * 4 2 1 30 30 H 0.97002 * 120.00059 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47042 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.46589 * 59.99635 * 13 2 1 33 33 H 1.00895 * 111.00497 * 56.03863 * 14 13 2 34 34 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 35 35 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 36 36 H 1.08998 * 110.51401 * 237.29204 * 18 16 15 37 37 H 1.09004 * 110.51074 * 359.86826 * 18 16 15 38 38 H 1.08998 * 110.37423 * 142.81183 * 19 18 16 39 39 H 1.09000 * 110.37639 * 265.03903 * 19 18 16 40 40 H 1.08996 * 110.34381 * 281.58882 * 21 20 19 41 41 H 1.09005 * 110.50779 * 159.18502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6257 -1.5519 -3.8527 9 14 1.2471 0.3982 -5.2572 10 1 0.4227 1.5653 -4.8530 11 1 2.4018 0.8648 -6.0660 12 1 0.4219 -0.5355 -6.0651 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6953 3.6703 16 6 1.4922 0.0532 4.8956 17 1 0.4078 0.1511 4.8436 18 6 1.9087 -0.6723 6.1945 19 6 2.7780 0.3637 6.9410 20 8 2.3482 1.6438 6.4284 21 6 2.1563 1.4433 5.0088 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9565 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1301 -0.7216 -1.2490 29 1 1.6767 -1.7489 -1.2493 30 1 2.8600 -1.8833 -4.7337 31 1 3.1300 -0.7209 1.2494 32 1 1.6766 -1.7489 1.2492 33 1 0.5438 0.0413 2.4402 34 1 3.1107 -0.6955 3.6873 35 1 1.6570 -1.7226 3.6868 36 1 1.0304 -0.9310 6.7860 37 1 2.4893 -1.5656 5.9638 38 1 2.5995 0.3057 8.0147 39 1 3.8335 0.2009 6.7232 40 1 3.1161 1.4486 4.4922 41 1 1.5002 2.2117 4.5999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126661716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:55 Heat of formation + Delta-G solvation = -71.757026 kcal Electronic energy + Delta-G solvation = -17795.053175 eV Core-core repulsion = 15094.834731 eV Total energy + Delta-G solvation = -2700.218444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56445 -37.60079 -34.85593 -32.56648 -31.52887 -29.28502 -27.01168 -26.33986 -25.80058 -24.09695 -22.83006 -21.96277 -20.51111 -17.85740 -16.58691 -16.27901 -16.00937 -15.46229 -14.86830 -14.71887 -14.21566 -14.05503 -13.58377 -13.10640 -12.78536 -12.62959 -12.05084 -11.95404 -11.86313 -11.64739 -11.30311 -11.13879 -10.93941 -10.82516 -10.74935 -10.68220 -10.49570 -10.25861 -10.09669 -9.87533 -9.68538 -9.02133 -8.82102 -8.32121 -8.12394 -5.96487 -3.96543 3.32392 3.40319 3.43851 3.87710 4.22679 4.48806 4.57749 4.67491 4.89298 4.96762 5.17898 5.35235 5.39507 5.50879 5.55968 5.56781 5.68037 5.72875 5.74857 5.83578 5.89896 5.97369 6.09720 6.24116 6.32855 6.50136 6.65759 6.69641 6.78580 6.82941 7.20536 7.20824 7.26224 7.37943 7.64171 7.70752 7.85210 8.03953 8.48370 9.09140 9.66418 11.15250 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057684 B = 0.004044 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.284179 B = 6921.890058 C = 7064.112505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.070 3.930 14 N -0.687 5.687 15 C 0.066 3.934 16 C -0.119 4.119 17 H 0.080 0.920 18 C -0.151 4.151 19 C 0.046 3.954 20 O -0.384 6.384 21 C 0.060 3.940 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.258 0.742 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.338 0.662 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 1.686 18.065 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.319 5.319 15 C -0.064 4.064 16 C -0.138 4.138 17 H 0.099 0.901 18 C -0.190 4.190 19 C -0.031 4.031 20 O -0.303 6.303 21 C -0.016 4.016 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.092 2.235 18.050 18.221 hybrid contribution -0.777 -0.791 -1.132 1.584 sum -1.869 1.445 16.918 17.082 Atomic orbital electron populations 1.21771 0.96093 1.00331 1.00433 1.20631 0.94724 0.96151 0.94395 1.21599 0.99757 0.95783 1.00185 1.19130 0.96108 0.94972 0.90227 1.21280 1.30701 1.11853 0.90600 0.92218 1.25021 0.95419 0.95119 0.99082 1.69979 1.37410 1.23224 1.23175 0.86607 0.78621 0.79724 0.83479 1.19758 1.21149 1.21198 1.22108 0.99755 0.94661 0.89320 1.60581 1.16349 1.53763 1.01207 1.22002 1.00324 0.94854 0.89202 1.22539 1.01190 0.95847 0.94206 0.90139 1.22976 1.00582 0.99129 0.96285 1.23355 0.97733 0.83193 0.98861 1.89134 1.88273 1.30715 1.22180 1.23450 1.00386 0.96415 0.81354 0.94800 0.91702 0.94146 0.94195 0.92693 0.93882 0.96699 0.96955 0.93228 0.91606 0.95895 0.84288 0.91039 0.95350 0.90788 0.90405 0.89497 0.92409 0.91619 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.82 7.65 -34.44 -0.26 -14.08 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.19 4.65 -3.82 -0.02 1.17 16 14 N -0.69 -9.48 5.56 -113.78 -0.63 -10.11 16 15 C 0.07 0.76 4.83 -3.82 -0.02 0.74 16 16 C -0.12 -1.21 3.29 -89.05 -0.29 -1.50 16 17 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.15 -1.31 6.74 -25.17 -0.17 -1.48 16 19 C 0.05 0.42 7.64 37.93 0.29 0.71 16 20 O -0.38 -4.72 11.65 -35.23 -0.41 -5.13 16 21 C 0.06 0.69 7.06 37.93 0.27 0.95 16 22 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 23 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 27 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.34 4.49 6.77 -39.29 -0.27 4.23 16 34 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.61 7.73 -51.93 -0.40 0.21 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -29.41 318.66 -7.86 -37.26 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.42 Total: -0.69 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 0.08 Total: -16.58 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.10 Total: -36.23 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.41 Total: -5.13 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.41 -7.86 -37.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126661716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.494 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds