Wall clock time and date at job start Sun Mar 29 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47151 * 2 1 4 4 C 1.52998 * 109.47231 * 240.00372 * 2 1 3 5 5 C 1.50701 * 109.47357 * 59.99828 * 4 2 1 6 6 H 1.07999 * 119.99687 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00007 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99960 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47211 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47075 * 119.99910 * 9 7 5 12 12 H 1.48504 * 109.47242 * 239.99777 * 9 7 5 13 13 C 1.53003 * 109.47284 * 120.00108 * 2 1 3 14 14 N 1.46903 * 109.46899 * 300.00454 * 13 2 1 15 15 C 1.46898 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.45399 * 54.29817 * 16 15 14 18 18 C 1.54506 * 110.51258 * 176.90137 * 16 15 14 19 19 C 1.54473 * 104.06202 * 118.64474 * 18 16 15 20 20 O 1.44427 * 104.80393 * 23.98322 * 19 18 16 21 21 C 1.44643 * 105.36539 * 319.56140 * 20 19 18 22 22 H 1.09004 * 109.47066 * 299.99897 * 1 2 3 23 23 H 1.09004 * 109.46990 * 59.99909 * 1 2 3 24 24 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47147 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47495 * 300.00396 * 3 2 1 27 27 H 1.09004 * 109.46784 * 59.99614 * 3 2 1 28 28 H 1.09006 * 109.47316 * 180.02562 * 4 2 1 29 29 H 1.09002 * 109.47225 * 299.99691 * 4 2 1 30 30 H 0.97002 * 120.00059 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47042 * 180.02562 * 13 2 1 32 32 H 1.08995 * 109.46589 * 59.99635 * 13 2 1 33 33 H 1.00895 * 111.00497 * 56.03863 * 14 13 2 34 34 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 35 35 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 36 36 H 1.08998 * 110.51401 * 237.29204 * 18 16 15 37 37 H 1.09004 * 110.51074 * 359.86826 * 18 16 15 38 38 H 1.08998 * 110.37423 * 142.81183 * 19 18 16 39 39 H 1.09000 * 110.37639 * 265.03903 * 19 18 16 40 40 H 1.08996 * 110.34381 * 281.58882 * 21 20 19 41 41 H 1.09005 * 110.50779 * 159.18502 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 2.6257 -1.5519 -3.8527 9 14 1.2471 0.3982 -5.2572 10 1 0.4227 1.5653 -4.8530 11 1 2.4018 0.8648 -6.0660 12 1 0.4219 -0.5355 -6.0651 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6953 3.6703 16 6 1.4922 0.0532 4.8956 17 1 0.4078 0.1511 4.8436 18 6 1.9087 -0.6723 6.1945 19 6 2.7780 0.3637 6.9410 20 8 2.3482 1.6438 6.4284 21 6 2.1563 1.4433 5.0088 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9565 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1301 -0.7216 -1.2490 29 1 1.6767 -1.7489 -1.2493 30 1 2.8600 -1.8833 -4.7337 31 1 3.1300 -0.7209 1.2494 32 1 1.6766 -1.7489 1.2492 33 1 0.5438 0.0413 2.4402 34 1 3.1107 -0.6955 3.6873 35 1 1.6570 -1.7226 3.6868 36 1 1.0304 -0.9310 6.7860 37 1 2.4893 -1.5656 5.9638 38 1 2.5995 0.3057 8.0147 39 1 3.8335 0.2009 6.7232 40 1 3.1161 1.4486 4.4922 41 1 1.5002 2.2117 4.5999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126661716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:54 Heat of formation + Delta-G solvation = -90.386541 kcal Electronic energy + Delta-G solvation = -17795.861011 eV Core-core repulsion = 15094.834731 eV Total energy + Delta-G solvation = -2701.026280 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41193 -39.06624 -36.14281 -34.42529 -32.69732 -30.16750 -28.93934 -27.88259 -27.10234 -25.52526 -24.03098 -23.22056 -21.35373 -19.45782 -18.33228 -17.38962 -17.09165 -16.57002 -16.34503 -15.86068 -15.56162 -15.33406 -14.90773 -14.51995 -14.23683 -13.89151 -13.69995 -13.47357 -12.93701 -12.84564 -12.69463 -12.50374 -12.43552 -12.24100 -12.18074 -12.06214 -11.89365 -11.78888 -11.46306 -11.34998 -10.85116 -10.70700 -10.69675 -10.51036 -9.28198 -8.14165 -6.21003 1.40140 1.41401 1.53449 2.43816 3.07030 3.19971 3.25641 3.76338 3.87123 4.03444 4.15467 4.23351 4.25525 4.39669 4.44137 4.52347 4.68269 4.74205 4.81881 4.82745 4.87400 4.94311 4.97322 5.02306 5.09210 5.11752 5.21773 5.23314 5.28366 5.52702 5.54954 5.59648 5.66502 5.87848 5.90332 5.93525 6.09378 6.37434 6.54481 6.94584 7.46497 8.98424 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057684 B = 0.004044 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.284179 B = 6921.890058 C = 7064.112505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.107 4.107 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.083 3.917 14 N -0.683 5.683 15 C 0.069 3.931 16 C -0.112 4.112 17 H 0.086 0.914 18 C -0.146 4.146 19 C 0.039 3.961 20 O -0.406 6.406 21 C 0.059 3.941 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.036 0.964 25 H 0.029 0.971 26 H 0.037 0.963 27 H 0.069 0.931 28 H -0.017 1.017 29 H -0.016 1.016 30 H 0.259 0.741 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.345 0.655 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 2.425 19.328 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.056 4.056 3 C -0.164 4.164 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.046 4.046 14 N -0.315 5.315 15 C -0.060 4.060 16 C -0.131 4.131 17 H 0.104 0.896 18 C -0.184 4.184 19 C -0.037 4.037 20 O -0.326 6.326 21 C -0.017 4.017 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.164 0.836 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.229 2.985 19.333 19.689 hybrid contribution -0.389 -1.039 -1.462 1.835 sum -2.618 1.945 17.871 18.167 Atomic orbital electron populations 1.21686 0.94625 1.00397 1.01234 1.20501 0.95857 0.96083 0.93189 1.21504 0.99080 0.95284 1.00555 1.19020 0.94038 0.94006 0.92801 1.21661 1.30143 1.11842 0.91462 0.91581 1.25921 0.95736 0.95908 1.02589 1.70116 1.38971 1.24953 1.23959 0.85527 0.78127 0.78820 0.79376 1.18442 1.20888 1.20803 1.21793 0.99063 0.94222 0.89540 1.60498 1.16773 1.53492 1.00776 1.22019 1.00198 0.95216 0.88586 1.22469 1.01290 0.95153 0.94200 0.89572 1.22968 1.01093 0.99049 0.95330 1.23559 0.98112 0.82188 0.99880 1.89112 1.88517 1.32473 1.22483 1.23437 1.00022 0.97091 0.81182 0.91251 0.93559 0.94468 0.95181 0.94391 0.91238 0.99826 0.99787 0.93183 0.92622 0.96409 0.83562 0.91365 0.94697 0.89600 0.89442 0.87864 0.91998 0.92504 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.31 7.89 71.98 0.57 -3.74 16 2 C -0.06 -2.18 0.60 -52.18 -0.03 -2.22 16 3 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -28.38 7.65 25.60 0.20 -28.18 16 6 H 0.07 3.51 5.68 -2.91 -0.02 3.49 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -57.46 13.29 21.45 0.28 -57.17 16 9 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.08 2.75 4.65 86.30 0.40 3.15 16 14 N -0.68 -17.42 5.56 -513.89 -2.86 -20.27 16 15 C 0.07 1.45 4.83 86.31 0.42 1.87 16 16 C -0.11 -2.01 3.29 -9.78 -0.03 -2.04 16 17 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 18 C -0.15 -2.12 6.74 31.61 0.21 -1.91 16 19 C 0.04 0.63 7.64 72.48 0.55 1.19 16 20 O -0.41 -9.32 11.65 -148.98 -1.74 -11.06 16 21 C 0.06 1.24 7.06 72.48 0.51 1.76 16 22 H 0.07 1.94 6.57 -2.39 -0.02 1.93 16 23 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 27 H 0.07 2.23 7.60 -2.39 -0.02 2.21 16 28 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 29 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.34 8.12 6.77 -89.70 -0.61 7.52 16 34 H 0.07 1.50 8.01 -2.39 -0.02 1.48 16 35 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.12 7.73 -2.38 -0.02 1.10 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.28 7.78 -2.39 -0.02 1.26 16 41 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -63.68 318.66 2.05 -61.63 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.37 Total: 11.61 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 3.96 Total: -31.25 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -2.57 Total: -77.45 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.74 Total: -11.06 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -63.68 2.05 -61.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126661716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.756 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds