Wall clock time and date at job start Sun Mar 29 2020 22:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47101 * 2 1 4 4 C 1.53004 * 109.47036 * 240.00100 * 2 1 3 5 5 C 1.50703 * 109.46971 * 59.99845 * 4 2 1 6 6 H 1.07994 * 120.00003 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99677 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00250 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99696 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47605 * 90.00019 * 9 7 5 11 11 H 1.48506 * 109.47220 * 209.99757 * 9 7 5 12 12 H 1.48503 * 109.47250 * 329.99785 * 9 7 5 13 13 C 1.52998 * 109.47259 * 120.00368 * 2 1 3 14 14 N 1.46902 * 109.46947 * 299.99935 * 13 2 1 15 15 C 1.46905 * 111.00203 * 179.97438 * 14 13 2 16 16 C 1.53175 * 109.53865 * 85.44389 * 15 14 13 17 17 C 1.53092 * 109.16179 * 176.85125 * 16 15 14 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 1.09002 * 109.46911 * 299.99533 * 1 2 3 22 22 H 1.08999 * 109.47170 * 59.99947 * 1 2 3 23 23 H 1.08999 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47227 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47151 * 300.00064 * 3 2 1 26 26 H 1.09002 * 109.46857 * 60.00433 * 3 2 1 27 27 H 1.09001 * 109.46911 * 179.97438 * 4 2 1 28 28 H 1.08999 * 109.47241 * 299.99665 * 4 2 1 29 29 H 0.97002 * 120.00124 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.47258 * 180.02562 * 13 2 1 31 31 H 1.09006 * 109.47270 * 59.99398 * 13 2 1 32 32 H 1.00903 * 111.00265 * 56.04837 * 14 13 2 33 33 H 1.08997 * 109.61151 * 325.22762 * 15 14 13 34 34 H 1.09006 * 109.52647 * 296.75425 * 16 15 14 35 35 H 1.08998 * 109.52537 * 56.94317 * 16 15 14 36 36 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 37 37 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 38 38 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 39 39 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 40 40 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 41 41 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 2.2272 1.4412 -5.6608 11 1 1.0844 -0.5794 -6.3617 12 1 -0.0593 1.0369 -4.9615 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0289 2.4486 15 6 2.0209 -0.6954 3.6703 16 6 3.4153 -0.1753 4.0330 17 6 3.8641 -0.8164 5.3488 18 8 2.9100 -0.5208 6.3709 19 6 1.5987 -1.0242 6.1081 20 6 1.0589 -0.3914 4.8229 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 -0.7208 -1.2495 28 1 1.6767 -1.7489 -1.2493 29 1 2.8622 -1.8818 -4.7337 30 1 3.1301 -0.7209 1.2494 31 1 1.6766 -1.7490 1.2492 32 1 0.5438 0.0412 2.4402 33 1 2.0647 -1.7720 3.5060 34 1 4.1186 -0.4363 3.2422 35 1 3.3813 0.9080 4.1486 36 1 4.8376 -0.4176 5.6340 37 1 3.9369 -1.8963 5.2208 38 1 0.9402 -0.7750 6.9403 39 1 1.6416 -2.1069 5.9901 40 1 0.9773 0.6875 4.9543 41 1 0.0769 -0.8071 4.5968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126706936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:40 Heat of formation + Delta-G solvation = -73.280748 kcal Electronic energy + Delta-G solvation = -18068.519719 eV Core-core repulsion = 15368.235202 eV Total energy + Delta-G solvation = -2700.284517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53888 -37.50061 -34.95333 -32.43669 -31.22012 -30.58435 -26.94705 -26.34125 -25.58796 -23.72566 -23.56725 -21.98367 -20.14509 -17.87319 -16.40572 -16.23831 -16.10582 -15.36653 -14.95573 -14.73846 -14.46152 -13.82872 -13.58911 -13.19139 -12.72682 -12.51054 -12.35384 -12.06007 -11.98660 -11.47701 -11.36403 -10.97477 -10.91811 -10.76354 -10.70604 -10.49868 -10.40249 -10.23119 -10.10065 -9.72997 -9.68088 -9.00475 -8.82100 -8.31703 -8.11171 -5.96249 -3.96392 3.33421 3.39952 3.42649 3.74398 4.28912 4.49792 4.63675 4.83450 4.91154 5.09770 5.18835 5.35676 5.39608 5.48883 5.52513 5.55684 5.69648 5.74017 5.83215 5.94367 5.98189 6.05523 6.23529 6.30649 6.35028 6.51561 6.66603 6.79377 6.83146 7.05662 7.20929 7.23679 7.26410 7.40863 7.66985 7.71184 7.85587 8.04001 8.48503 9.08987 9.66468 11.15457 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053405 B = 0.004416 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.173574 B = 6339.443077 C = 6505.305224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.070 3.930 14 N -0.681 5.681 15 C 0.085 3.915 16 C -0.143 4.143 17 C 0.061 3.939 18 O -0.385 6.385 19 C 0.065 3.935 20 C -0.158 4.158 21 H 0.033 0.967 22 H 0.064 0.936 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.015 0.985 28 H 0.012 0.988 29 H 0.259 0.741 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.339 0.661 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 0.929 17.183 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.313 5.313 15 C -0.026 4.026 16 C -0.181 4.181 17 C -0.017 4.017 18 O -0.304 6.304 19 C -0.013 4.013 20 C -0.196 4.196 21 H 0.052 0.948 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.159 0.841 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.939 1.378 17.205 17.286 hybrid contribution -0.880 -0.649 -1.339 1.729 sum -1.820 0.729 15.866 15.987 Atomic orbital electron populations 1.21769 0.96115 1.00320 1.00420 1.20632 0.94710 0.96153 0.94406 1.21594 0.99740 0.95791 1.00153 1.19126 0.96093 0.94959 0.90213 1.21239 1.30791 1.11863 0.90616 0.92295 1.25014 0.95417 0.95098 0.99056 1.69967 1.37335 1.23212 1.23281 0.86663 0.79241 0.79427 0.83079 1.20766 1.21394 1.19939 1.22155 0.99771 0.94518 0.89375 1.60607 1.16185 1.53687 1.00856 1.21504 0.94826 0.96021 0.90202 1.22201 0.96806 1.02158 0.96962 1.22631 0.92299 0.98944 0.87785 1.87908 1.19157 1.78837 1.44497 1.22524 0.84348 0.97154 0.97250 1.22394 0.98922 1.02927 0.95342 0.94822 0.91693 0.94151 0.94219 0.92715 0.93894 0.96714 0.96961 0.93171 0.91643 0.95978 0.84140 0.94190 0.90843 0.90325 0.88842 0.93455 0.88938 0.93395 0.90124 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 2 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 3 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.89 7.65 -34.44 -0.26 -14.16 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.07 1.22 4.45 -3.82 -0.02 1.20 16 14 N -0.68 -9.84 5.52 -106.53 -0.59 -10.43 16 15 C 0.08 1.05 2.58 -67.53 -0.17 0.88 16 16 C -0.14 -1.72 5.63 -26.59 -0.15 -1.87 16 17 C 0.06 0.64 6.84 37.21 0.25 0.89 16 18 O -0.39 -4.53 10.77 -35.23 -0.38 -4.91 16 19 C 0.06 0.63 6.84 37.20 0.25 0.88 16 20 C -0.16 -1.64 5.40 -26.59 -0.14 -1.78 16 21 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 22 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 26 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.07 1.17 7.54 -51.93 -0.39 0.78 16 31 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 32 H 0.34 4.69 6.40 -39.29 -0.25 4.44 16 33 H 0.04 0.52 7.80 -51.93 -0.41 0.11 16 34 H 0.07 0.92 7.58 -51.93 -0.39 0.53 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -29.45 314.22 -7.83 -37.29 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.37 Total: -0.02 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 0.05 Total: -17.08 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.15 Total: -36.60 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.45 -7.83 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126706936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.994 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds