Wall clock time and date at job start Sun Mar 29 2020 22:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99633 * 2 1 3 5 5 C 1.50706 * 109.46953 * 60.00071 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00344 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00355 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99771 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46889 * 89.99924 * 9 7 5 11 11 H 1.48498 * 109.47131 * 210.00227 * 9 7 5 12 12 H 1.48500 * 109.47362 * 330.00383 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00122 * 2 1 3 14 14 N 1.46902 * 109.46626 * 299.99665 * 13 2 1 15 15 C 1.46905 * 110.99800 * 180.02562 * 14 13 2 16 16 H 1.09010 * 109.52141 * 324.87769 * 15 14 13 17 17 C 1.53169 * 109.52348 * 204.68641 * 15 14 13 18 18 C 1.53182 * 109.03688 * 183.11343 * 17 15 14 19 19 C 1.53089 * 109.16384 * 56.98238 * 18 17 15 20 20 O 1.42908 * 109.41259 * 302.39026 * 19 18 17 21 21 C 1.42902 * 114.09769 * 61.15733 * 20 19 18 22 22 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 23 23 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 27 27 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 0.96991 * 119.99886 * 179.97438 * 8 7 5 31 31 H 1.08993 * 109.46955 * 60.00011 * 13 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 13 2 1 33 33 H 1.00898 * 110.99915 * 56.05185 * 14 13 2 34 34 H 1.09002 * 109.54704 * 302.97889 * 17 15 14 35 35 H 1.09005 * 109.54382 * 63.25019 * 17 15 14 36 36 H 1.09001 * 109.52048 * 297.07111 * 18 17 15 37 37 H 1.09004 * 109.52247 * 176.88959 * 18 17 15 38 38 H 1.09000 * 109.47915 * 182.40895 * 19 18 17 39 39 H 1.08995 * 109.49196 * 62.37624 * 19 18 17 40 40 H 1.08998 * 109.48210 * 178.85260 * 21 20 19 41 41 H 1.09007 * 109.48710 * 58.82929 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 1.4324 0.1379 -4.8058 9 14 2.9443 -2.0011 -3.9033 10 1 2.0857 -3.2119 -3.9481 11 1 3.7358 -1.9088 -5.1564 12 1 3.8650 -2.0899 -2.7417 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0218 -0.6945 3.6704 16 1 2.0598 -1.7715 3.5068 17 6 1.0640 -0.3841 4.8247 18 6 1.6071 -1.0184 6.1089 19 6 3.0211 -0.4929 6.3699 20 8 3.8524 -0.7872 5.2454 21 6 3.4198 -0.1815 4.0256 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7217 -1.2490 29 1 1.6766 -1.7490 -1.2492 30 1 1.6667 -0.1935 -5.6867 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 0.5438 0.0413 2.4402 34 1 0.9879 0.6954 4.9552 35 1 0.0796 -0.7962 4.6025 36 1 1.6364 -2.1021 5.9956 37 1 0.9606 -0.7561 6.9463 38 1 3.4290 -0.9733 7.2592 39 1 2.9856 0.5857 6.5233 40 1 4.1151 -0.4375 3.2261 41 1 3.3895 0.9012 4.1480 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126784414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:04 Heat of formation + Delta-G solvation = -69.735107 kcal Electronic energy + Delta-G solvation = -18127.697630 eV Core-core repulsion = 15427.566863 eV Total energy + Delta-G solvation = -2700.130767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58947 -37.56645 -34.86869 -32.86864 -32.07231 -29.39980 -27.49402 -26.40577 -25.43794 -24.99511 -22.90019 -21.56399 -20.31739 -17.85268 -16.79777 -16.40670 -16.28721 -15.37384 -14.99093 -14.75826 -14.03238 -13.91800 -13.76689 -13.21367 -12.82912 -12.70955 -12.60472 -12.22623 -12.11600 -11.72457 -11.32391 -11.10400 -11.02110 -10.91727 -10.85469 -10.49921 -10.40843 -10.30525 -9.84006 -9.67118 -9.63321 -9.28373 -8.89410 -8.49014 -8.21607 -5.99391 -3.95594 3.32763 3.40723 3.44558 3.71162 4.31613 4.49094 4.60116 4.66194 4.77433 4.98548 5.12917 5.28210 5.33722 5.43370 5.55439 5.59924 5.62492 5.64239 5.75315 5.81188 5.86658 5.97483 6.05964 6.16531 6.23853 6.41248 6.58451 6.67634 6.79584 6.97913 7.09698 7.14321 7.20509 7.32386 7.33127 7.46267 7.59105 7.86003 8.60339 9.06385 9.63833 11.13726 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041605 B = 0.004872 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.839676 B = 5746.185088 C = 6021.531012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.118 4.118 4 C -0.005 4.005 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.067 3.933 14 N -0.679 5.679 15 C 0.053 3.947 16 H 0.048 0.952 17 C -0.124 4.124 18 C -0.153 4.153 19 C 0.059 3.941 20 O -0.386 6.386 21 C 0.072 3.928 22 H 0.035 0.965 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.015 0.985 29 H 0.008 0.992 30 H 0.261 0.739 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.343 0.657 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -1.404 20.664 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.062 4.062 14 N -0.313 5.313 15 C -0.058 4.058 16 H 0.066 0.934 17 C -0.162 4.162 18 C -0.191 4.191 19 C -0.018 4.018 20 O -0.304 6.304 21 C -0.005 4.005 22 H 0.054 0.946 23 H 0.089 0.911 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.026 0.974 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.015 -1.065 20.487 20.540 hybrid contribution -0.291 -1.569 -0.355 1.635 sum 0.723 -2.634 20.133 20.317 Atomic orbital electron populations 1.21783 0.95628 1.00444 1.00953 1.20424 0.95067 0.96201 0.93245 1.21614 0.99699 0.95477 1.00712 1.19633 0.96059 0.95232 0.93320 1.21136 1.31497 1.13181 0.88688 0.90428 1.25012 0.95779 0.96743 0.96022 1.69906 1.46185 1.40618 0.97827 0.86854 0.81331 0.83980 0.77541 1.20524 1.21531 1.19118 1.22214 0.99797 0.94676 0.89525 1.60482 1.16556 1.53568 1.00664 1.22117 0.95870 0.97133 0.90673 0.93352 1.21778 0.98537 1.01662 0.94239 1.22182 0.97362 1.01473 0.98103 1.22558 0.90345 0.99552 0.89320 1.87940 1.51117 1.74090 1.17221 1.22573 0.94980 0.97139 0.85855 0.94608 0.91116 0.94166 0.94199 0.92113 0.93676 0.96686 0.97415 0.92891 0.95784 0.91546 0.83694 0.90867 0.91620 0.91174 0.90841 0.89159 0.93175 0.88888 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 2 C -0.05 -0.94 0.60 -154.51 -0.09 -1.03 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -13.99 8.20 -34.44 -0.28 -14.27 16 6 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -27.80 13.96 55.43 0.77 -27.02 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.07 1.08 4.45 -3.82 -0.02 1.07 16 14 N -0.68 -9.24 5.52 -106.57 -0.59 -9.83 16 15 C 0.05 0.64 2.69 -67.58 -0.18 0.45 16 16 H 0.05 0.64 7.81 -51.92 -0.41 0.23 16 17 C -0.12 -1.22 5.30 -26.55 -0.14 -1.36 16 18 C -0.15 -1.31 6.14 -26.59 -0.16 -1.47 16 19 C 0.06 0.55 6.84 37.20 0.25 0.80 16 20 O -0.39 -4.82 10.77 -35.23 -0.38 -5.20 16 21 C 0.07 0.89 6.33 37.20 0.24 1.13 16 22 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 23 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 27 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 28 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 29 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 32 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 33 H 0.34 4.47 6.41 -39.29 -0.25 4.21 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 1.22 7.52 -51.93 -0.39 0.82 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -29.66 310.53 -7.49 -37.15 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.33 Total: 0.15 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 0.02 Total: -17.12 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.19 Total: -36.85 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.38 Total: -5.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.66 -7.49 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126784414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.580 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds