Wall clock time and date at job start Sun Mar 29 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47093 * 2 1 4 4 C 1.52995 * 109.46850 * 239.99725 * 2 1 3 5 5 C 1.50704 * 109.47091 * 60.00331 * 4 2 1 6 6 H 1.08001 * 119.99838 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99589 * 179.97438 * 5 4 2 8 8 N 1.31503 * 120.00427 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99269 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47237 * 90.00323 * 9 7 5 11 11 H 1.48504 * 109.46765 * 210.00027 * 9 7 5 12 12 H 1.48496 * 109.47279 * 329.99574 * 9 7 5 13 13 C 1.53000 * 109.46977 * 119.99912 * 2 1 3 14 14 N 1.46904 * 109.47271 * 299.99771 * 13 2 1 15 15 C 1.46900 * 110.99896 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.57408 * 35.15820 * 15 14 13 17 17 C 1.53178 * 109.51856 * 155.31791 * 15 14 13 18 18 C 1.53178 * 109.03511 * 176.88811 * 17 15 14 19 19 C 1.53096 * 109.16278 * 303.01594 * 18 17 15 20 20 O 1.42930 * 109.41898 * 57.61137 * 19 18 17 21 21 C 1.42904 * 114.08305 * 298.84863 * 20 19 18 22 22 H 1.09005 * 109.47155 * 299.99813 * 1 2 3 23 23 H 1.08996 * 109.47400 * 59.99769 * 1 2 3 24 24 H 1.09004 * 109.47204 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46716 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46731 * 300.00214 * 3 2 1 27 27 H 1.09005 * 109.46968 * 60.00072 * 3 2 1 28 28 H 1.09010 * 109.46790 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47090 * 299.99840 * 4 2 1 30 30 H 0.97005 * 120.00350 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47370 * 180.02562 * 13 2 1 32 32 H 1.09004 * 109.47131 * 59.99983 * 13 2 1 33 33 H 1.00897 * 110.99560 * 56.05010 * 14 13 2 34 34 H 1.09002 * 109.54461 * 296.75157 * 17 15 14 35 35 H 1.08992 * 109.54753 * 56.92962 * 17 15 14 36 36 H 1.08999 * 109.52488 * 62.92180 * 18 17 15 37 37 H 1.08996 * 109.52248 * 183.05161 * 18 17 15 38 38 H 1.09003 * 109.48254 * 177.58780 * 19 18 17 39 39 H 1.08992 * 109.48305 * 297.61902 * 19 18 17 40 40 H 1.09002 * 109.48241 * 301.16394 * 21 20 19 41 41 H 1.08999 * 109.47648 * 181.13988 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4818 -3.7319 8 7 2.6279 -1.5504 -3.8526 9 14 1.2490 0.3993 -5.2571 10 1 2.2274 1.4409 -5.6607 11 1 1.0843 -0.5796 -6.3616 12 1 -0.0592 1.0368 -4.9616 13 6 2.0399 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 1 3.0238 -1.0899 3.5079 17 6 2.0475 0.3114 4.8247 18 6 2.4645 -0.4121 6.1088 19 6 1.4976 -1.5700 6.3700 20 8 1.4980 -2.4521 5.2454 21 6 1.0711 -1.8421 4.0256 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 -0.7209 -1.2494 29 1 1.6766 -1.7489 -1.2491 30 1 2.8622 -1.8819 -4.7336 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7489 1.2493 33 1 0.5438 0.0413 2.4402 34 1 2.7642 1.1021 4.6025 35 1 1.0556 0.7442 4.9541 36 1 3.4765 -0.8010 5.9956 37 1 2.4338 0.2851 6.9461 38 1 1.8146 -2.1148 7.2592 39 1 0.4927 -1.1769 6.5234 40 1 0.0605 -1.4526 4.1482 41 1 1.0806 -2.5829 3.2260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126784646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:06 Heat of formation + Delta-G solvation = -73.476974 kcal Electronic energy + Delta-G solvation = -18083.107196 eV Core-core repulsion = 15382.814169 eV Total energy + Delta-G solvation = -2700.293026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60453 -37.44847 -34.76338 -32.89797 -32.09755 -29.19354 -26.86966 -26.33665 -25.18520 -25.05096 -23.08381 -21.87914 -20.39461 -17.88767 -16.53197 -16.26723 -16.16597 -15.28371 -14.93415 -14.40064 -14.34352 -14.07493 -13.58562 -13.05067 -12.78294 -12.71546 -12.44528 -11.98597 -11.82930 -11.58956 -11.19906 -11.02403 -10.94947 -10.87686 -10.75530 -10.58152 -10.49803 -10.24818 -10.10214 -9.80249 -9.63326 -9.01045 -8.82235 -8.30958 -8.05876 -5.95347 -3.95572 3.34028 3.40588 3.43141 3.70619 4.37407 4.51053 4.71221 4.75233 4.83566 4.96256 5.09743 5.31425 5.40442 5.45502 5.57051 5.61809 5.64860 5.75630 5.79735 5.88329 5.97372 6.12715 6.16083 6.27129 6.33016 6.50461 6.65726 6.77645 6.82979 6.98714 7.20957 7.24457 7.26177 7.39679 7.63592 7.71480 7.86261 8.04807 8.49126 9.09799 9.67256 11.16324 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053312 B = 0.004441 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.085964 B = 6302.829549 C = 6463.965854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.068 3.932 14 N -0.676 5.676 15 C 0.054 3.946 16 H 0.084 0.916 17 C -0.109 4.109 18 C -0.156 4.156 19 C 0.059 3.941 20 O -0.383 6.383 21 C 0.033 3.967 22 H 0.032 0.968 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.042 0.958 28 H 0.015 0.985 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.338 0.662 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 2.129 18.099 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.060 4.060 14 N -0.308 5.308 15 C -0.057 4.057 16 H 0.102 0.898 17 C -0.147 4.147 18 C -0.194 4.194 19 C -0.018 4.018 20 O -0.300 6.300 21 C -0.046 4.046 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.158 0.842 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.006 2.278 17.979 18.233 hybrid contribution -0.887 -0.169 -1.006 1.352 sum -2.894 2.109 16.973 17.346 Atomic orbital electron populations 1.21778 0.96103 1.00372 1.00421 1.20636 0.94705 0.96154 0.94417 1.21600 0.99792 0.95795 1.00150 1.19127 0.96133 0.94985 0.90163 1.21238 1.30800 1.11900 0.90617 0.92300 1.25012 0.95413 0.95095 0.99046 1.69962 1.37272 1.23210 1.23290 0.86666 0.79225 0.79431 0.83113 1.20781 1.21395 1.19948 1.22182 0.99824 0.94765 0.89243 1.60682 1.16350 1.52929 1.00834 1.22215 0.99582 0.92797 0.91140 0.89805 1.21565 1.02156 0.98057 0.92954 1.22214 1.00559 0.98105 0.98518 1.22588 0.98354 0.91723 0.89154 1.87940 1.88104 1.36910 1.17070 1.23450 0.97099 0.97082 0.86963 0.94870 0.91661 0.94082 0.94170 0.92689 0.93917 0.96673 0.96894 0.93160 0.91462 0.95735 0.84243 0.90755 0.91988 0.91055 0.90913 0.89134 0.93388 0.93294 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.88 7.65 -34.44 -0.26 -14.14 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.07 1.17 4.45 -3.82 -0.02 1.15 16 14 N -0.68 -9.57 5.47 -106.57 -0.58 -10.16 16 15 C 0.05 0.67 2.67 -67.57 -0.18 0.49 16 16 H 0.08 1.15 7.81 -51.93 -0.41 0.75 16 17 C -0.11 -1.16 5.64 -26.55 -0.15 -1.31 16 18 C -0.16 -1.41 6.14 -26.59 -0.16 -1.57 16 19 C 0.06 0.56 6.84 37.21 0.25 0.81 16 20 O -0.38 -4.86 10.77 -35.23 -0.38 -5.24 16 21 C 0.03 0.40 6.10 37.21 0.23 0.62 16 22 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 23 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 27 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 28 H 0.01 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 32 H 0.02 0.42 7.49 -51.93 -0.39 0.03 16 33 H 0.34 4.57 6.49 -39.29 -0.25 4.31 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.09 1.19 7.52 -51.93 -0.39 0.80 16 LS Contribution 314.18 15.07 4.73 4.73 Total: -1.00 -29.29 314.18 -7.88 -37.17 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.36 Total: 0.11 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 0.00 Total: -17.03 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.15 Total: -36.34 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.38 Total: -5.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.29 -7.88 -37.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126784646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.308 kcal (2) G-P(sol) polarization free energy of solvation -29.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds