Wall clock time and date at job start Sun Mar 29 2020 22:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47093 * 2 1 4 4 C 1.52995 * 109.46850 * 239.99725 * 2 1 3 5 5 C 1.50704 * 109.47091 * 60.00331 * 4 2 1 6 6 H 1.08001 * 119.99838 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99589 * 179.97438 * 5 4 2 8 8 N 1.31503 * 120.00427 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99269 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47237 * 90.00323 * 9 7 5 11 11 H 1.48504 * 109.46765 * 210.00027 * 9 7 5 12 12 H 1.48496 * 109.47279 * 329.99574 * 9 7 5 13 13 C 1.53000 * 109.46977 * 119.99912 * 2 1 3 14 14 N 1.46904 * 109.47271 * 299.99771 * 13 2 1 15 15 C 1.46900 * 110.99896 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.57408 * 35.15820 * 15 14 13 17 17 C 1.53178 * 109.51856 * 155.31791 * 15 14 13 18 18 C 1.53178 * 109.03511 * 176.88811 * 17 15 14 19 19 C 1.53096 * 109.16278 * 303.01594 * 18 17 15 20 20 O 1.42930 * 109.41898 * 57.61137 * 19 18 17 21 21 C 1.42904 * 114.08305 * 298.84863 * 20 19 18 22 22 H 1.09005 * 109.47155 * 299.99813 * 1 2 3 23 23 H 1.08996 * 109.47400 * 59.99769 * 1 2 3 24 24 H 1.09004 * 109.47204 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46716 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46731 * 300.00214 * 3 2 1 27 27 H 1.09005 * 109.46968 * 60.00072 * 3 2 1 28 28 H 1.09010 * 109.46790 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.47090 * 299.99840 * 4 2 1 30 30 H 0.97005 * 120.00350 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47370 * 180.02562 * 13 2 1 32 32 H 1.09004 * 109.47131 * 59.99983 * 13 2 1 33 33 H 1.00897 * 110.99560 * 56.05010 * 14 13 2 34 34 H 1.09002 * 109.54461 * 296.75157 * 17 15 14 35 35 H 1.08992 * 109.54753 * 56.92962 * 17 15 14 36 36 H 1.08999 * 109.52488 * 62.92180 * 18 17 15 37 37 H 1.08996 * 109.52248 * 183.05161 * 18 17 15 38 38 H 1.09003 * 109.48254 * 177.58780 * 19 18 17 39 39 H 1.08992 * 109.48305 * 297.61902 * 19 18 17 40 40 H 1.09002 * 109.48241 * 301.16394 * 21 20 19 41 41 H 1.08999 * 109.47648 * 181.13988 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4818 -3.7319 8 7 2.6279 -1.5504 -3.8526 9 14 1.2490 0.3993 -5.2571 10 1 2.2274 1.4409 -5.6607 11 1 1.0843 -0.5796 -6.3616 12 1 -0.0592 1.0368 -4.9616 13 6 2.0399 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0208 -0.6952 3.6704 16 1 3.0238 -1.0899 3.5079 17 6 2.0475 0.3114 4.8247 18 6 2.4645 -0.4121 6.1088 19 6 1.4976 -1.5700 6.3700 20 8 1.4980 -2.4521 5.2454 21 6 1.0711 -1.8421 4.0256 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1299 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 -0.7209 -1.2494 29 1 1.6766 -1.7489 -1.2491 30 1 2.8622 -1.8819 -4.7336 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7489 1.2493 33 1 0.5438 0.0413 2.4402 34 1 2.7642 1.1021 4.6025 35 1 1.0556 0.7442 4.9541 36 1 3.4765 -0.8010 5.9956 37 1 2.4338 0.2851 6.9461 38 1 1.8146 -2.1148 7.2592 39 1 0.4927 -1.1769 6.5234 40 1 0.0605 -1.4526 4.1482 41 1 1.0806 -2.5829 3.2260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126784646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:06 Heat of formation + Delta-G solvation = -91.996453 kcal Electronic energy + Delta-G solvation = -18083.910261 eV Core-core repulsion = 15382.814169 eV Total energy + Delta-G solvation = -2701.096091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.56884 -38.91130 -36.06948 -34.45233 -33.47442 -30.39245 -28.77366 -27.89214 -26.66358 -25.92536 -24.64819 -23.17203 -21.31184 -19.48743 -18.33127 -17.49992 -17.16745 -16.58647 -16.24739 -15.86402 -15.53001 -15.31548 -14.80706 -14.52496 -14.40262 -13.88600 -13.65895 -13.51857 -13.42489 -12.81803 -12.73486 -12.57481 -12.40915 -12.25738 -12.13472 -12.02935 -11.96001 -11.69263 -11.47345 -11.36303 -10.87642 -10.71473 -10.62024 -10.50423 -9.23720 -8.13743 -6.20973 1.41381 1.41889 1.52437 2.43976 2.82486 3.20306 3.31497 3.77816 3.88348 4.02196 4.10768 4.17048 4.24082 4.26503 4.38652 4.49565 4.63666 4.72008 4.74928 4.79315 4.88144 4.94522 4.96983 5.08301 5.10128 5.20370 5.22140 5.29307 5.35345 5.52060 5.54273 5.58962 5.65248 5.87303 5.92731 5.97738 6.26087 6.37177 6.50222 6.94339 7.46546 8.98705 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053312 B = 0.004441 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.085964 B = 6302.829549 C = 6463.965854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.055 4.055 3 C -0.107 4.107 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.067 0.933 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.081 3.919 14 N -0.669 5.669 15 C 0.055 3.945 16 H 0.066 0.934 17 C -0.105 4.105 18 C -0.150 4.150 19 C 0.051 3.949 20 O -0.404 6.404 21 C 0.036 3.964 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.028 0.972 26 H 0.039 0.961 27 H 0.069 0.931 28 H -0.018 1.018 29 H -0.016 1.016 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.346 0.654 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 3.661 19.629 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.056 4.056 3 C -0.164 4.164 4 C 0.001 3.999 5 C -0.552 4.552 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.185 1.185 13 C -0.048 4.048 14 N -0.301 5.301 15 C -0.056 4.056 16 H 0.085 0.915 17 C -0.143 4.143 18 C -0.188 4.188 19 C -0.025 4.025 20 O -0.322 6.322 21 C -0.042 4.042 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.166 0.834 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.360 3.825 19.532 20.184 hybrid contribution -0.438 -0.677 -1.407 1.622 sum -3.799 3.148 18.125 18.784 Atomic orbital electron populations 1.21693 0.94507 1.00483 1.01313 1.20498 0.95933 0.96104 0.93037 1.21508 0.99066 0.95232 1.00636 1.19016 0.94000 0.94027 0.92815 1.21627 1.30266 1.11923 0.91416 0.91496 1.25926 0.95705 0.95871 1.02612 1.70109 1.38874 1.25000 1.24033 0.85570 0.79146 0.78207 0.78896 1.20156 1.21287 1.18549 1.21864 0.98941 0.94391 0.89581 1.60629 1.16828 1.52474 1.00216 1.22227 0.98711 0.93625 0.91005 0.91529 1.21534 1.02713 0.97378 0.92658 1.22190 0.99928 0.98264 0.98466 1.22836 0.99292 0.91763 0.88567 1.87916 1.88290 1.38254 1.17777 1.23342 0.97596 0.96418 0.86854 0.91238 0.93399 0.94405 0.95250 0.94201 0.91212 0.99926 0.99788 0.93179 0.92811 0.96301 0.83384 0.91172 0.90928 0.91828 0.88500 0.87497 0.92104 0.91865 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 7.89 71.98 0.57 -3.77 16 2 C -0.06 -2.19 0.60 -52.18 -0.03 -2.22 16 3 C -0.11 -4.04 8.06 71.98 0.58 -3.46 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -28.55 7.65 25.60 0.20 -28.35 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.08 2.79 4.45 86.30 0.38 3.17 16 14 N -0.67 -17.82 5.47 -491.09 -2.68 -20.50 16 15 C 0.05 1.30 2.67 45.01 0.12 1.42 16 16 H 0.07 1.82 7.81 -2.39 -0.02 1.80 16 17 C -0.10 -1.96 5.64 30.71 0.17 -1.79 16 18 C -0.15 -2.32 6.14 30.69 0.19 -2.13 16 19 C 0.05 0.84 6.84 72.01 0.49 1.34 16 20 O -0.40 -9.66 10.77 -148.98 -1.60 -11.27 16 21 C 0.04 0.84 6.10 72.01 0.44 1.28 16 22 H 0.07 1.94 6.57 -2.38 -0.02 1.93 16 23 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 24 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 27 H 0.07 2.24 7.60 -2.38 -0.02 2.23 16 28 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 29 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H 0.26 15.14 8.31 -92.70 -0.77 14.36 16 31 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 32 H 0.02 0.66 7.49 -2.38 -0.02 0.64 16 33 H 0.35 8.36 6.49 -89.70 -0.58 7.78 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.27 8.09 -2.39 -0.02 1.25 16 41 H 0.08 1.99 7.52 -2.39 -0.02 1.97 16 Total: -1.00 -63.97 314.18 2.11 -61.86 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.40 Total: 13.06 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 3.69 Total: -32.16 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.40 Total: -78.07 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.60 Total: -11.27 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.97 2.11 -61.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126784646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.140 kcal (2) G-P(sol) polarization free energy of solvation -63.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds