Wall clock time and date at job start Sun Mar 29 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.50706 * 109.46957 * 60.00074 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00340 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46692 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47025 * 119.99570 * 9 7 5 12 12 H 1.48492 * 109.46854 * 239.99727 * 9 7 5 13 13 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 14 14 N 1.46902 * 109.46626 * 300.00172 * 13 2 1 15 15 C 1.46905 * 110.99800 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47234 * 179.97438 * 15 14 13 17 17 O 1.42894 * 112.84896 * 53.80329 * 16 15 14 18 18 C 1.53784 * 113.61269 * 282.49840 * 16 15 14 19 19 C 1.53784 * 87.07784 * 220.01885 * 18 16 15 20 20 C 1.53782 * 87.08340 * 25.43483 * 19 18 16 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.08993 * 109.47839 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 29 29 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47050 * 59.99996 * 13 2 1 31 31 H 1.09001 * 109.46801 * 180.02562 * 13 2 1 32 32 H 1.00898 * 110.99915 * 303.94815 * 14 13 2 33 33 H 1.08993 * 109.47004 * 300.00108 * 15 14 13 34 34 H 1.09002 * 109.47091 * 59.99861 * 15 14 13 35 35 H 0.96705 * 114.00068 * 309.66326 * 17 16 15 36 36 H 1.09003 * 113.61755 * 334.56659 * 18 16 15 37 37 H 1.08998 * 113.61713 * 105.46917 * 18 16 15 38 38 H 1.09002 * 113.61442 * 270.88237 * 19 18 16 39 39 H 1.08999 * 113.69034 * 139.99430 * 19 18 16 40 40 H 1.08995 * 113.61378 * 220.01834 * 20 19 18 41 41 H 1.09003 * 113.69054 * 89.12547 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5514 -3.8526 9 14 1.2485 0.3988 -5.2572 10 1 0.4238 1.5658 -4.8530 11 1 2.4038 0.8647 -6.0655 12 1 0.4229 -0.5340 -6.0655 13 6 2.0400 -0.7213 1.2493 14 7 1.5502 -0.0288 2.4487 15 6 2.0207 -0.6952 3.6704 16 6 1.4922 0.0534 4.8956 17 8 0.0732 0.2206 4.8741 18 6 2.2623 1.3477 5.2063 19 6 2.1420 0.9695 6.6920 20 6 2.0280 -0.4927 6.2296 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 -0.7209 -1.2494 28 1 1.6767 -1.7489 -1.2492 29 1 2.8610 -1.8828 -4.7336 30 1 1.6767 -1.7490 1.2492 31 1 3.1300 -0.7209 1.2494 32 1 1.8197 0.9435 2.4402 33 1 1.6570 -1.7225 3.6869 34 1 3.1106 -0.6954 3.6874 35 1 -0.2673 0.5858 4.0459 36 1 3.2878 1.3451 4.8367 37 1 1.7181 2.2540 4.9409 38 1 1.2374 1.3490 7.1673 39 1 3.0425 1.1755 7.2707 40 1 1.2946 -1.0721 6.7904 41 1 2.9888 -0.9997 6.1395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126796171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:46 Heat of formation + Delta-G solvation = -50.479955 kcal Electronic energy + Delta-G solvation = -17987.459010 eV Core-core repulsion = 15288.163209 eV Total energy + Delta-G solvation = -2699.295801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80247 -37.46475 -34.58321 -33.95674 -32.11501 -27.91254 -26.75572 -26.35706 -25.93244 -24.69441 -22.68303 -21.81079 -19.70790 -18.04372 -16.61564 -16.20416 -15.46824 -15.41834 -15.03727 -14.76006 -14.22961 -13.56958 -13.37646 -13.13195 -12.71014 -12.54279 -12.35891 -12.01046 -11.86272 -11.58297 -11.26456 -11.02539 -10.99508 -10.88588 -10.76170 -10.51962 -10.43671 -10.23587 -10.07394 -9.70718 -9.65223 -9.02469 -8.82282 -8.32821 -8.20130 -5.97059 -3.97267 3.31975 3.39927 3.43268 4.03060 4.19913 4.42290 4.48676 4.66380 4.80455 4.86508 5.34990 5.38931 5.45838 5.52040 5.56712 5.65561 5.73458 5.74857 5.76080 5.91175 5.96538 6.11568 6.20215 6.22042 6.31926 6.47992 6.62734 6.75825 6.81087 7.15641 7.18964 7.24352 7.33910 7.58883 7.69523 7.76779 7.84195 8.03160 8.47333 9.08363 9.65757 11.14671 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056031 B = 0.004305 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.601266 B = 6502.465518 C = 6590.778391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.688 5.688 15 C 0.038 3.962 16 C 0.116 3.884 17 O -0.542 6.542 18 C -0.170 4.170 19 C -0.134 4.134 20 C -0.129 4.129 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.032 0.968 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.258 0.742 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.337 0.663 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.388 0.612 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 4.233 17.356 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.005 4.005 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.057 4.057 14 N -0.320 5.320 15 C -0.092 4.092 16 C 0.074 3.926 17 O -0.349 6.349 18 C -0.208 4.208 19 C -0.171 4.171 20 C -0.167 4.167 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.238 0.762 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.827 3.552 17.819 18.188 hybrid contribution 0.754 0.791 -1.588 1.928 sum -0.073 4.343 16.230 16.802 Atomic orbital electron populations 1.21599 0.94945 1.00631 1.00146 1.20636 0.95896 0.94971 0.94395 1.21772 0.99688 0.96759 1.00402 1.19130 0.95887 0.95233 0.90202 1.21275 1.30714 1.11900 0.90594 0.92224 1.25019 0.95399 0.95114 0.99081 1.69975 1.37341 1.23243 1.23199 0.86606 0.78594 0.79750 0.83484 1.19759 1.21194 1.21141 1.22113 0.96366 0.98149 0.89099 1.60486 1.63683 1.06457 1.01374 1.22515 0.97339 0.99324 0.89977 1.22134 0.81925 0.94620 0.93928 1.86339 1.18936 1.86997 1.42607 1.23644 1.01034 0.98989 0.97130 1.22725 1.01895 0.96259 0.96232 1.23012 1.01077 0.97179 0.95393 0.93956 0.92654 0.94124 0.94130 0.91652 0.94888 0.96939 0.96661 0.93212 0.91486 0.95800 0.84375 0.90506 0.94607 0.76175 0.89767 0.90922 0.89928 0.91631 0.90648 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.24 16 3 C -0.13 -2.34 7.89 37.16 0.29 -2.04 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.78 7.65 -34.44 -0.26 -14.04 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.07 1.20 4.65 -3.82 -0.02 1.18 16 14 N -0.69 -9.40 5.00 -113.77 -0.57 -9.97 16 15 C 0.04 0.47 5.28 -3.82 -0.02 0.45 16 16 C 0.12 1.29 1.49 -89.80 -0.13 1.15 16 17 O -0.54 -6.82 13.41 -35.23 -0.47 -7.29 16 18 C -0.17 -1.67 7.27 -25.92 -0.19 -1.86 16 19 C -0.13 -1.23 8.02 -25.92 -0.21 -1.43 16 20 C -0.13 -1.26 7.47 -25.92 -0.19 -1.45 16 21 H 0.04 0.70 7.60 -51.93 -0.39 0.30 16 22 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 26 H 0.03 0.50 6.57 -51.93 -0.34 0.16 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.34 4.41 6.58 -39.29 -0.26 4.15 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.04 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.39 4.41 8.38 45.56 0.38 4.79 16 36 H 0.08 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -29.10 320.55 -7.87 -36.97 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.64 Total: 4.05 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.74 Total: -19.02 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.17 Total: -36.04 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.47 Total: -7.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.10 -7.87 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126796171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.508 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds