Wall clock time and date at job start Sun Mar 29 2020 22:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.50706 * 109.46957 * 60.00074 * 4 2 1 6 6 H 1.07999 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00340 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46692 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47025 * 119.99570 * 9 7 5 12 12 H 1.48492 * 109.46854 * 239.99727 * 9 7 5 13 13 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 14 14 N 1.46902 * 109.46626 * 300.00172 * 13 2 1 15 15 C 1.46905 * 110.99800 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47234 * 179.97438 * 15 14 13 17 17 O 1.42894 * 112.84896 * 53.80329 * 16 15 14 18 18 C 1.53784 * 113.61269 * 282.49840 * 16 15 14 19 19 C 1.53784 * 87.07784 * 220.01885 * 18 16 15 20 20 C 1.53782 * 87.08340 * 25.43483 * 19 18 16 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 1.08993 * 109.47839 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 29 29 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.47050 * 59.99996 * 13 2 1 31 31 H 1.09001 * 109.46801 * 180.02562 * 13 2 1 32 32 H 1.00898 * 110.99915 * 303.94815 * 14 13 2 33 33 H 1.08993 * 109.47004 * 300.00108 * 15 14 13 34 34 H 1.09002 * 109.47091 * 59.99861 * 15 14 13 35 35 H 0.96705 * 114.00068 * 309.66326 * 17 16 15 36 36 H 1.09003 * 113.61755 * 334.56659 * 18 16 15 37 37 H 1.08998 * 113.61713 * 105.46917 * 18 16 15 38 38 H 1.09002 * 113.61442 * 270.88237 * 19 18 16 39 39 H 1.08999 * 113.69034 * 139.99430 * 19 18 16 40 40 H 1.08995 * 113.61378 * 220.01834 * 20 19 18 41 41 H 1.09003 * 113.69054 * 89.12547 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 2.6266 -1.5514 -3.8526 9 14 1.2485 0.3988 -5.2572 10 1 0.4238 1.5658 -4.8530 11 1 2.4038 0.8647 -6.0655 12 1 0.4229 -0.5340 -6.0655 13 6 2.0400 -0.7213 1.2493 14 7 1.5502 -0.0288 2.4487 15 6 2.0207 -0.6952 3.6704 16 6 1.4922 0.0534 4.8956 17 8 0.0732 0.2206 4.8741 18 6 2.2623 1.3477 5.2063 19 6 2.1420 0.9695 6.6920 20 6 2.0280 -0.4927 6.2296 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 -0.7209 -1.2494 28 1 1.6767 -1.7489 -1.2492 29 1 2.8610 -1.8828 -4.7336 30 1 1.6767 -1.7490 1.2492 31 1 3.1300 -0.7209 1.2494 32 1 1.8197 0.9435 2.4402 33 1 1.6570 -1.7225 3.6869 34 1 3.1106 -0.6954 3.6874 35 1 -0.2673 0.5858 4.0459 36 1 3.2878 1.3451 4.8367 37 1 1.7181 2.2540 4.9409 38 1 1.2374 1.3490 7.1673 39 1 3.0425 1.1755 7.2707 40 1 1.2946 -1.0721 6.7904 41 1 2.9888 -0.9997 6.1395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126796171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:45 Heat of formation + Delta-G solvation = -69.869737 kcal Electronic energy + Delta-G solvation = -17988.299814 eV Core-core repulsion = 15288.163209 eV Total energy + Delta-G solvation = -2700.136605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67507 -38.95981 -35.60959 -35.32430 -34.02079 -29.43367 -28.34322 -27.88523 -26.76615 -26.12998 -24.24902 -22.95275 -20.52637 -19.61541 -18.33827 -17.60080 -16.65567 -16.42788 -16.38005 -15.98312 -15.56117 -15.08575 -14.72021 -14.47527 -14.04234 -13.86527 -13.69524 -13.43970 -13.15429 -12.86811 -12.69933 -12.64969 -12.33322 -12.24535 -12.15718 -12.04766 -11.88287 -11.74391 -11.38098 -11.19919 -10.86097 -10.73266 -10.51282 -10.42738 -9.37324 -8.14210 -6.21187 1.40277 1.41544 1.53519 2.43762 3.12887 3.20030 3.22419 3.62452 3.88065 3.92714 4.01044 4.15925 4.21373 4.38869 4.53245 4.57655 4.76559 4.79459 4.80954 4.82153 4.86488 4.95596 5.05545 5.08668 5.11872 5.21617 5.22742 5.33673 5.47244 5.52508 5.54779 5.59541 5.65197 5.87503 5.92887 6.00387 6.36366 6.48609 6.90318 6.94463 7.46423 8.98419 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056031 B = 0.004305 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.601266 B = 6502.465518 C = 6590.778391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.038 3.962 5 C -0.513 4.513 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.084 3.916 14 N -0.679 5.679 15 C 0.041 3.959 16 C 0.110 3.890 17 O -0.555 6.555 18 C -0.166 4.166 19 C -0.129 4.129 20 C -0.129 4.129 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.069 0.931 27 H -0.016 1.016 28 H -0.017 1.017 29 H 0.259 0.741 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.345 0.655 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.392 0.608 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 5.863 18.510 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.551 4.551 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.046 4.046 14 N -0.312 5.312 15 C -0.088 4.088 16 C 0.068 3.932 17 O -0.363 6.363 18 C -0.204 4.204 19 C -0.167 4.167 20 C -0.167 4.167 21 H 0.090 0.910 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.002 0.998 28 H 0.001 0.999 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.165 0.835 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.242 0.758 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.172 5.200 18.991 19.725 hybrid contribution 0.869 0.244 -1.899 2.103 sum -0.303 5.445 17.092 17.941 Atomic orbital electron populations 1.21515 0.94198 1.00071 1.00711 1.20493 0.96375 0.95636 0.93021 1.21687 0.99457 0.95505 1.01294 1.19024 0.93964 0.94089 0.92847 1.21660 1.30117 1.11896 0.91419 0.91499 1.25922 0.95718 0.95899 1.02606 1.70115 1.38948 1.25004 1.23968 0.85524 0.78122 0.78832 0.79366 1.18366 1.20818 1.20935 1.21801 0.95887 0.97447 0.89416 1.60372 1.63501 1.06665 1.00663 1.22531 0.97853 0.98853 0.89604 1.22266 0.81447 0.95647 0.93825 1.86336 1.19848 1.87143 1.42986 1.23633 1.01145 0.98094 0.97485 1.22700 1.02426 0.95504 0.96044 1.23089 1.01489 0.97726 0.94410 0.90978 0.94310 0.95280 0.94480 0.93451 0.91218 0.99789 0.99894 0.93190 0.92739 0.96296 0.83508 0.91565 0.93731 0.75781 0.88958 0.90871 0.90461 0.90038 0.91264 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.98 8.06 71.98 0.58 -3.40 16 2 C -0.05 -2.12 0.60 -52.18 -0.03 -2.15 16 3 C -0.12 -4.23 7.89 71.98 0.57 -3.66 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -28.24 7.65 25.60 0.20 -28.04 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 9 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 C 0.08 2.77 4.65 86.31 0.40 3.18 16 14 N -0.68 -17.20 5.00 -513.86 -2.57 -19.77 16 15 C 0.04 0.93 5.28 86.30 0.46 1.38 16 16 C 0.11 2.20 1.49 -10.27 -0.02 2.19 16 17 O -0.56 -12.95 13.41 -148.98 -2.00 -14.95 16 18 C -0.17 -2.79 7.27 31.12 0.23 -2.57 16 19 C -0.13 -2.04 8.02 31.12 0.25 -1.79 16 20 C -0.13 -2.24 7.47 31.12 0.23 -2.01 16 21 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 22 H 0.04 1.54 6.62 -2.39 -0.02 1.52 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 26 H 0.07 1.89 6.57 -2.39 -0.02 1.88 16 27 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.35 7.96 6.58 -89.70 -0.59 7.37 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 0.95 8.05 -2.39 -0.02 0.93 16 35 H 0.39 8.09 8.38 -74.05 -0.62 7.47 16 36 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -63.03 320.55 0.97 -62.06 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -0.21 Total: 18.04 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.45 Total: -34.59 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -2.29 Total: -76.93 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -2.00 Total: -14.95 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -63.03 0.97 -62.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126796171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.809 kcal (2) G-P(sol) polarization free energy of solvation -63.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds