Wall clock time and date at job start Sun Mar 29 2020 22:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.52995 * 109.47415 * 239.99448 * 2 1 3 5 5 C 1.50703 * 109.46702 * 60.00452 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99862 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46717 * 59.99724 * 9 7 5 11 11 H 1.48494 * 109.47356 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47279 * 300.00306 * 9 7 5 13 13 C 1.53006 * 109.46829 * 119.99894 * 2 1 3 14 14 N 1.46901 * 109.47140 * 299.99927 * 13 2 1 15 15 C 1.46904 * 110.99944 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.46883 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.47475 * 304.99933 * 16 15 14 18 18 O 1.42896 * 109.47335 * 65.00332 * 16 15 14 19 19 C 1.53003 * 109.46999 * 185.00378 * 16 15 14 20 20 C 1.53001 * 117.51964 * 111.28362 * 19 16 15 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 16 22 22 H 1.09000 * 109.47676 * 300.00336 * 1 2 3 23 23 H 1.09002 * 109.47104 * 60.00336 * 1 2 3 24 24 H 1.09007 * 109.47423 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46846 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47141 * 299.99494 * 3 2 1 27 27 H 1.09003 * 109.46702 * 60.00168 * 3 2 1 28 28 H 1.09001 * 109.47427 * 179.97438 * 4 2 1 29 29 H 1.08994 * 109.47332 * 300.00420 * 4 2 1 30 30 H 0.97004 * 120.00103 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47089 * 180.02562 * 13 2 1 32 32 H 1.09003 * 109.47287 * 60.00266 * 13 2 1 33 33 H 1.00901 * 111.00295 * 303.95819 * 14 13 2 34 34 H 1.08998 * 109.46606 * 60.00081 * 15 14 13 35 35 H 1.08999 * 109.47300 * 300.00127 * 15 14 13 36 36 H 0.96696 * 114.00050 * 59.99711 * 18 16 15 37 37 H 1.09002 * 115.54973 * 325.58146 * 19 16 15 38 38 H 1.09001 * 117.49733 * 214.97413 * 20 19 16 39 39 H 1.08995 * 117.49577 * 359.97438 * 20 19 16 40 40 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 41 41 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 2.6265 -1.5516 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 1.7423 1.7980 -5.2576 11 1 1.7424 -0.3021 -6.4696 12 1 -0.2376 0.3979 -5.2568 13 6 2.0399 -0.7213 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0207 -0.6952 3.6704 16 6 1.4911 0.0527 4.8956 17 1 1.7803 1.1018 4.8339 18 8 0.0662 -0.0471 4.9354 19 6 2.0813 -0.5652 6.1648 20 6 3.0834 0.2742 6.9597 21 6 1.6720 0.0482 7.5054 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 -0.7209 -1.2493 29 1 1.6767 -1.7489 -1.2491 30 1 2.8603 -1.8835 -4.7335 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7490 1.2493 33 1 1.8196 0.9436 2.4402 34 1 3.1105 -0.6954 3.6874 35 1 1.6569 -1.7226 3.6870 36 1 -0.2632 -0.9545 4.9906 37 1 2.2413 -1.6429 6.1324 38 1 3.9028 -0.2512 7.4502 39 1 3.3228 1.2668 6.5783 40 1 0.9826 0.8923 7.4831 41 1 1.5629 -0.6260 8.3549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126840583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:59 Heat of formation + Delta-G solvation = -48.428235 kcal Electronic energy + Delta-G solvation = -17633.249676 eV Core-core repulsion = 14934.042845 eV Total energy + Delta-G solvation = -2699.206832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.90657 -37.41362 -35.59354 -33.93488 -32.12161 -28.75939 -26.84054 -26.28284 -25.07046 -23.03158 -22.58019 -21.85921 -20.97000 -17.89413 -16.79505 -16.23632 -15.93025 -15.63180 -14.81457 -14.52989 -14.19125 -13.88212 -13.49619 -13.02768 -12.77738 -12.46011 -11.99964 -11.93977 -11.79919 -11.68265 -11.09973 -10.92885 -10.84175 -10.76514 -10.75223 -10.45456 -10.42725 -10.25683 -10.15133 -9.86832 -9.64420 -8.97252 -8.79945 -8.29224 -8.02448 -5.93971 -3.94023 3.36576 3.40930 3.43442 3.45833 4.10373 4.45616 4.50580 4.64634 4.71687 4.81287 5.05018 5.21485 5.27346 5.38398 5.41737 5.61304 5.67901 5.71359 5.78321 5.83173 5.86985 6.01955 6.07680 6.27394 6.37159 6.54590 6.72368 6.83188 6.87383 7.24489 7.25903 7.30864 7.42483 7.63185 7.72198 7.76782 7.88613 8.06430 8.51144 9.11206 9.68627 11.17726 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.058480 B = 0.003933 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.677334 B = 7117.315377 C = 7237.706273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.070 3.930 14 N -0.678 5.678 15 C 0.030 3.970 16 C 0.142 3.858 17 H 0.093 0.907 18 O -0.546 6.546 19 C -0.193 4.193 20 C -0.176 4.176 21 C -0.166 4.166 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.338 0.662 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.372 0.628 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 2.122 19.421 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.310 5.310 15 C -0.100 4.100 16 C 0.082 3.918 17 H 0.111 0.889 18 O -0.350 6.350 19 C -0.212 4.212 20 C -0.213 4.213 21 C -0.203 4.203 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.219 0.781 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.809 2.332 19.242 19.400 hybrid contribution 0.851 -0.117 -0.921 1.260 sum 0.043 2.215 18.321 18.454 Atomic orbital electron populations 1.21593 0.94914 1.00535 1.00251 1.20627 0.95947 0.94971 0.94337 1.21770 0.99599 0.96806 1.00458 1.19118 0.95830 0.95183 0.90216 1.21215 1.30742 1.11940 0.90632 0.92321 1.25018 0.95412 0.95126 0.99045 1.69959 1.37326 1.23210 1.23371 0.86720 0.79226 0.79763 0.82660 1.20359 1.21460 1.20286 1.22121 0.96150 0.98099 0.89484 1.60482 1.63600 1.06166 1.00747 1.22620 0.97482 0.98985 0.90955 1.21415 0.81061 0.99253 0.90053 0.88896 1.86594 1.19587 1.32311 1.96523 1.23096 1.04901 0.99476 0.93713 1.22947 0.93122 1.01281 1.03916 1.22844 0.97892 1.03502 0.96104 0.93675 0.92783 0.94273 0.94182 0.91711 0.94765 0.96983 0.96722 0.93130 0.96056 0.91707 0.84317 0.94870 0.90999 0.78090 0.87695 0.88782 0.88659 0.88350 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.06 37.16 0.30 -2.01 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.13 -2.45 7.89 37.16 0.29 -2.16 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -14.05 7.65 -34.44 -0.26 -14.31 16 6 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.23 4.65 -3.82 -0.02 1.22 16 14 N -0.68 -10.05 5.66 -113.77 -0.64 -10.69 16 15 C 0.03 0.36 5.31 -3.82 -0.02 0.34 16 16 C 0.14 1.51 3.34 -26.73 -0.09 1.42 16 17 H 0.09 1.03 7.90 -51.93 -0.41 0.62 16 18 O -0.55 -6.47 13.20 -35.23 -0.46 -6.94 16 19 C -0.19 -1.69 5.36 -90.61 -0.49 -2.18 16 20 C -0.18 -1.40 10.18 -26.73 -0.27 -1.68 16 21 C -0.17 -1.36 10.16 -26.73 -0.27 -1.63 16 22 H 0.04 0.83 7.60 -51.93 -0.39 0.43 16 23 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 24 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.33 6.62 -51.93 -0.34 0.99 16 27 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.34 4.91 6.77 -39.29 -0.27 4.64 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.37 3.36 9.04 45.56 0.41 3.78 16 37 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -30.19 326.54 -8.21 -38.40 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.61 Total: 3.98 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.13 Total: -20.06 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.09 Total: -37.07 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.46 Total: -6.94 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.19 -8.21 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126840583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.028 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds