Wall clock time and date at job start Sun Mar 29 2020 22:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 C 1.52995 * 109.47415 * 239.99448 * 2 1 3 5 5 C 1.50703 * 109.46702 * 60.00452 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99862 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00077 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.46717 * 59.99724 * 9 7 5 11 11 H 1.48494 * 109.47356 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47279 * 300.00306 * 9 7 5 13 13 C 1.53006 * 109.46829 * 119.99894 * 2 1 3 14 14 N 1.46901 * 109.47140 * 299.99927 * 13 2 1 15 15 C 1.46904 * 110.99944 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.46883 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.47475 * 304.99933 * 16 15 14 18 18 O 1.42896 * 109.47335 * 65.00332 * 16 15 14 19 19 C 1.53003 * 109.46999 * 185.00378 * 16 15 14 20 20 C 1.53001 * 117.51964 * 111.28362 * 19 16 15 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 16 22 22 H 1.09000 * 109.47676 * 300.00336 * 1 2 3 23 23 H 1.09002 * 109.47104 * 60.00336 * 1 2 3 24 24 H 1.09007 * 109.47423 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46846 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47141 * 299.99494 * 3 2 1 27 27 H 1.09003 * 109.46702 * 60.00168 * 3 2 1 28 28 H 1.09001 * 109.47427 * 179.97438 * 4 2 1 29 29 H 1.08994 * 109.47332 * 300.00420 * 4 2 1 30 30 H 0.97004 * 120.00103 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47089 * 180.02562 * 13 2 1 32 32 H 1.09003 * 109.47287 * 60.00266 * 13 2 1 33 33 H 1.00901 * 111.00295 * 303.95819 * 14 13 2 34 34 H 1.08998 * 109.46606 * 60.00081 * 15 14 13 35 35 H 1.08999 * 109.47300 * 300.00127 * 15 14 13 36 36 H 0.96696 * 114.00050 * 59.99711 * 18 16 15 37 37 H 1.09002 * 115.54973 * 325.58146 * 19 16 15 38 38 H 1.09001 * 117.49733 * 214.97413 * 20 19 16 39 39 H 1.08995 * 117.49577 * 359.97438 * 20 19 16 40 40 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 41 41 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4823 -3.7319 8 7 2.6265 -1.5516 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 1.7423 1.7980 -5.2576 11 1 1.7424 -0.3021 -6.4696 12 1 -0.2376 0.3979 -5.2568 13 6 2.0399 -0.7213 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0207 -0.6952 3.6704 16 6 1.4911 0.0527 4.8956 17 1 1.7803 1.1018 4.8339 18 8 0.0662 -0.0471 4.9354 19 6 2.0813 -0.5652 6.1648 20 6 3.0834 0.2742 6.9597 21 6 1.6720 0.0482 7.5054 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 -0.7209 -1.2493 29 1 1.6767 -1.7489 -1.2491 30 1 2.8603 -1.8835 -4.7335 31 1 3.1299 -0.7209 1.2496 32 1 1.6766 -1.7490 1.2493 33 1 1.8196 0.9436 2.4402 34 1 3.1105 -0.6954 3.6874 35 1 1.6569 -1.7226 3.6870 36 1 -0.2632 -0.9545 4.9906 37 1 2.2413 -1.6429 6.1324 38 1 3.9028 -0.2512 7.4502 39 1 3.3228 1.2668 6.5783 40 1 0.9826 0.8923 7.4831 41 1 1.5629 -0.6260 8.3549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126840583.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:58 Heat of formation + Delta-G solvation = -68.789437 kcal Electronic energy + Delta-G solvation = -17634.132604 eV Core-core repulsion = 14934.042845 eV Total energy + Delta-G solvation = -2700.089760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.82239 -38.83922 -36.44598 -35.39260 -34.05539 -29.98463 -28.72155 -27.89505 -26.56286 -24.59758 -23.28980 -23.07718 -21.74386 -19.54293 -18.33068 -17.66226 -16.88267 -16.70493 -16.49510 -15.78464 -15.40818 -15.22134 -14.83483 -14.47073 -14.03643 -13.90245 -13.78903 -13.38538 -13.01828 -12.74889 -12.71468 -12.40462 -12.37841 -12.24416 -12.15005 -11.93739 -11.88838 -11.43757 -11.37520 -11.11604 -10.96803 -10.84898 -10.52078 -10.49942 -9.24745 -8.13932 -6.21108 1.41068 1.43455 1.50775 2.43975 2.78971 3.15829 3.19792 3.71149 3.78490 3.97400 4.11284 4.13060 4.18550 4.27327 4.39371 4.41066 4.48602 4.72402 4.79427 4.80852 4.81346 4.95766 4.99736 5.05476 5.08004 5.21023 5.22028 5.25622 5.31814 5.51294 5.53861 5.58063 5.65941 5.86929 5.92595 6.08668 6.37203 6.50748 6.93715 6.95996 7.46209 8.98277 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.058480 B = 0.003933 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.677334 B = 7117.315377 C = 7237.706273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.041 3.959 5 C -0.516 4.516 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.083 3.917 14 N -0.678 5.678 15 C 0.032 3.968 16 C 0.150 3.850 17 H 0.089 0.911 18 O -0.563 6.563 19 C -0.197 4.197 20 C -0.174 4.174 21 C -0.164 4.164 22 H 0.066 0.934 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.066 0.934 28 H -0.016 1.016 29 H -0.016 1.016 30 H 0.260 0.740 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.342 0.658 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.383 0.617 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.824 3.195 20.638 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.046 4.046 14 N -0.310 5.310 15 C -0.098 4.098 16 C 0.090 3.910 17 H 0.107 0.893 18 O -0.369 6.369 19 C -0.216 4.216 20 C -0.211 4.211 21 C -0.201 4.201 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.161 0.839 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.311 3.414 20.481 20.805 hybrid contribution 1.010 -0.480 -1.245 1.673 sum -0.301 2.934 19.236 19.461 Atomic orbital electron populations 1.21484 0.94342 1.00018 1.00408 1.20504 0.96276 0.95624 0.93256 1.21682 0.99446 0.95662 1.01142 1.18998 0.93932 0.94074 0.92687 1.21603 1.30310 1.12015 0.91508 0.91648 1.25925 0.95677 0.95900 1.02578 1.70103 1.38833 1.24912 1.24119 0.85626 0.78935 0.78806 0.78459 1.19247 1.21291 1.19347 1.21818 0.95684 0.97501 0.89633 1.60423 1.63603 1.06316 1.00616 1.22681 0.97815 0.99116 0.90191 1.21312 0.80644 0.98892 0.90147 0.89329 1.86560 1.20247 1.33555 1.96567 1.22998 1.05637 0.99839 0.93095 1.23041 0.93357 1.01251 1.03418 1.22878 0.97864 1.03358 0.96034 0.91552 0.94363 0.95145 0.94396 0.93448 0.91559 0.99766 0.99778 0.93134 0.96525 0.92567 0.83899 0.94386 0.90736 0.76817 0.87010 0.87684 0.88628 0.89078 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 2 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 3 C -0.12 -4.50 7.89 71.98 0.57 -3.93 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.52 -28.96 7.65 25.60 0.20 -28.76 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 9 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 C 0.08 2.87 4.65 86.31 0.40 3.27 16 14 N -0.68 -18.86 5.66 -513.87 -2.91 -21.77 16 15 C 0.03 0.70 5.31 86.30 0.46 1.16 16 16 C 0.15 2.88 3.34 30.59 0.10 2.98 16 17 H 0.09 1.79 7.90 -2.38 -0.02 1.77 16 18 O -0.56 -12.28 13.20 -148.98 -1.97 -14.24 16 19 C -0.20 -3.03 5.36 -10.79 -0.06 -3.09 16 20 C -0.17 -2.39 10.18 30.59 0.31 -2.08 16 21 C -0.16 -2.33 10.16 30.60 0.31 -2.02 16 22 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 23 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 24 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 27 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 28 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.34 9.10 6.77 -89.69 -0.61 8.49 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.38 6.23 9.04 -74.06 -0.67 5.56 16 37 H 0.11 1.58 8.11 -2.39 -0.02 1.56 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 1.31 8.05 -2.39 -0.02 1.29 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -64.64 326.54 0.58 -64.06 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.28 Total: 18.52 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 3.42 Total: -35.84 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -2.62 Total: -79.34 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.97 Total: -14.24 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.64 0.58 -64.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126840583.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.727 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds