Wall clock time and date at job start Sun Mar 29 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 C 1.53003 * 109.57246 * 59.55442 * 3 2 1 5 5 O 1.42898 * 109.47227 * 54.54302 * 4 3 2 6 6 C 1.53114 * 109.52237 * 299.39502 * 3 2 1 7 7 C 1.53039 * 109.27920 * 297.74352 * 6 3 2 8 8 N 1.46843 * 109.52504 * 300.82626 * 7 6 3 9 9 C 1.46897 * 110.99815 * 185.83715 * 8 7 6 10 10 C 1.53007 * 109.47234 * 169.99833 * 9 8 7 11 11 C 1.50696 * 109.47346 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00097 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99718 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00221 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47282 * 59.99649 * 15 13 11 17 17 H 1.48502 * 109.47180 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47108 * 300.00098 * 15 13 11 19 19 C 1.46844 * 111.20075 * 61.73950 * 8 7 6 20 20 C 1.53043 * 109.52121 * 298.25958 * 19 8 7 21 21 H 1.08998 * 109.47292 * 304.71078 * 1 2 3 22 22 H 1.08998 * 109.47062 * 64.71097 * 1 2 3 23 23 H 1.08998 * 109.46751 * 184.70749 * 1 2 3 24 24 H 1.09006 * 109.47099 * 240.00499 * 2 1 3 25 25 H 1.08995 * 109.47317 * 120.00505 * 2 1 3 26 26 H 1.08996 * 109.47260 * 174.54899 * 4 3 2 27 27 H 1.09000 * 109.46477 * 294.54491 * 4 3 2 28 28 H 0.96699 * 113.99941 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.50418 * 177.80653 * 6 3 2 30 30 H 1.08994 * 109.50612 * 57.69269 * 6 3 2 31 31 H 1.08996 * 109.45823 * 60.84027 * 7 6 3 32 32 H 1.09000 * 109.46394 * 180.80539 * 7 6 3 33 33 H 1.08997 * 109.47785 * 289.99904 * 9 8 7 34 34 H 1.09001 * 109.47238 * 50.00070 * 9 8 7 35 35 H 1.09001 * 109.46890 * 299.99929 * 10 9 8 36 36 H 1.09001 * 109.46815 * 59.99977 * 10 9 8 37 37 H 0.97006 * 119.99564 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46147 * 178.24216 * 19 8 7 39 39 H 1.09001 * 109.46502 * 58.27255 * 19 8 7 40 40 H 1.08998 * 109.50003 * 299.23122 * 20 19 8 41 41 H 1.08999 * 109.49669 * 179.12188 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5221 2.1693 1.2428 5 8 1.8823 1.4302 2.4116 6 6 1.5427 2.1611 -1.2573 7 6 2.1136 1.4661 -2.4956 8 7 3.5807 1.4945 -2.4417 9 6 4.1634 0.9596 -3.6796 10 6 5.6690 1.2317 -3.6937 11 6 6.2666 0.6836 -4.9639 12 1 5.6358 0.1900 -5.6884 13 6 7.6189 0.8111 -5.2006 14 7 8.3872 1.4117 -4.3181 15 14 8.3599 0.1311 -6.7747 16 1 7.7270 0.7906 -7.9450 17 1 9.8213 0.3942 -6.7879 18 1 8.1204 -1.3330 -6.8423 19 6 4.0832 0.7697 -1.2676 20 6 3.5711 1.4440 0.0073 21 1 -0.3634 0.5852 0.8448 22 1 -0.3633 0.4390 -0.9292 23 1 -0.3633 -1.0242 0.0843 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.9635 3.1647 1.2920 27 1 0.4369 2.2554 1.1875 28 1 1.5853 1.8331 3.2389 29 1 1.8736 3.1995 -1.2379 30 1 0.4538 2.1261 -1.2898 31 1 1.7711 0.4317 -2.5216 32 1 1.7729 1.9840 -3.3922 33 1 3.9880 -0.1150 -3.7291 34 1 3.6986 1.4435 -4.5386 35 1 5.8444 2.3064 -3.6444 36 1 6.1337 0.7478 -2.8347 37 1 9.3386 1.5011 -4.4845 38 1 5.1731 0.7818 -1.2723 39 1 3.7314 -0.2615 -1.2993 40 1 3.9340 2.4710 0.0467 41 1 3.9315 0.8965 0.8783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127946890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:15 Heat of formation + Delta-G solvation = -69.940632 kcal Electronic energy + Delta-G solvation = -18331.466470 eV Core-core repulsion = 15631.326791 eV Total energy + Delta-G solvation = -2700.139679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86408 -36.86385 -34.84456 -32.90595 -31.02397 -30.56575 -29.11959 -26.57994 -24.18404 -23.75843 -22.62769 -21.43530 -19.91810 -17.84731 -17.37366 -16.41353 -15.71188 -15.09190 -14.87816 -14.55426 -14.22023 -13.90138 -13.69969 -13.19816 -12.84649 -12.62060 -12.28533 -12.09339 -11.92269 -11.63639 -11.42746 -11.17080 -10.91634 -10.86130 -10.74105 -10.55067 -10.25024 -10.11587 -10.02454 -9.86220 -9.66473 -9.23503 -9.07811 -8.28574 -7.57554 -5.95707 -3.97973 3.35824 3.40059 3.42477 4.15949 4.42633 4.59621 4.81590 4.86556 4.96584 5.23835 5.34839 5.39942 5.41487 5.46899 5.55710 5.60048 5.73525 5.76358 5.82478 5.92511 6.01897 6.08172 6.16980 6.22321 6.25823 6.34509 6.36782 6.49024 6.58479 6.64809 6.67732 7.03591 7.55435 7.60090 7.68246 7.86849 7.96618 8.14132 8.48300 9.09210 9.65308 11.15659 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.046003 B = 0.004731 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.512241 B = 5917.452760 C = 6172.030480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.055 4.055 4 C 0.086 3.914 5 O -0.568 6.568 6 C -0.105 4.105 7 C 0.056 3.944 8 N -0.537 5.537 9 C 0.063 3.937 10 C 0.028 3.972 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C 0.053 3.947 20 C -0.100 4.100 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.373 0.627 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.017 0.983 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.261 0.739 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 0.731 11.177 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.055 4.055 4 C 0.008 3.992 5 O -0.372 6.372 6 C -0.143 4.143 7 C -0.072 4.072 8 N -0.262 5.262 9 C -0.063 4.063 10 C -0.009 4.009 11 C -0.561 4.561 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.074 4.074 20 C -0.138 4.138 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.219 0.781 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.163 0.873 10.792 18.632 hybrid contribution -0.028 -0.781 -0.579 0.972 sum -15.191 0.092 10.213 18.306 Atomic orbital electron populations 1.21845 0.96474 1.01136 1.01380 1.21551 0.95271 0.95897 1.02240 1.20626 0.96505 0.95538 0.92834 1.22272 0.97659 0.93860 0.85396 1.86511 1.81856 1.52734 1.16095 1.21620 0.99237 0.99993 0.93470 1.22024 0.89370 0.98385 0.97464 1.62020 1.04848 1.55743 1.03617 1.22309 0.99227 0.95700 0.89102 1.19093 0.87496 0.97702 0.96616 1.21170 0.93058 1.37308 1.04562 0.92913 1.24986 0.97272 0.95368 0.96638 1.69969 1.05262 1.43060 1.34977 0.86666 0.78019 0.79447 0.83894 1.20252 1.21282 1.20331 1.22139 1.01185 0.94394 0.89721 1.21588 0.93211 1.01655 0.97346 0.92861 0.92808 0.93273 0.91835 0.91399 0.93821 0.93848 0.78143 0.91191 0.91811 0.95347 0.91270 0.96432 0.92238 0.95767 0.96483 0.92981 0.89689 0.95512 0.91484 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.21 37.16 0.34 -1.23 16 2 C -0.11 -1.40 4.20 -26.73 -0.11 -1.51 16 3 C -0.05 -0.69 0.38 -154.39 -0.06 -0.75 16 4 C 0.09 0.90 5.40 37.16 0.20 1.10 16 5 O -0.57 -5.96 12.39 -35.23 -0.44 -6.40 16 6 C -0.11 -1.33 4.61 -26.65 -0.12 -1.45 16 7 C 0.06 0.85 5.21 -3.83 -0.02 0.83 16 8 N -0.54 -10.08 4.66 -234.67 -1.09 -11.18 16 9 C 0.06 1.38 4.90 -3.82 -0.02 1.36 16 10 C 0.03 0.75 4.90 -27.88 -0.14 0.62 16 11 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 12 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 C 0.05 0.95 5.04 -3.83 -0.02 0.93 16 20 C -0.10 -1.50 4.76 -26.65 -0.13 -1.63 16 21 H 0.05 0.51 6.31 -51.93 -0.33 0.19 16 22 H 0.05 0.54 6.65 -51.93 -0.35 0.19 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.88 4.92 -51.93 -0.26 0.63 16 25 H 0.07 0.90 7.57 -51.93 -0.39 0.51 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.40 6.63 -51.93 -0.34 0.05 16 28 H 0.37 2.21 9.12 45.56 0.42 2.63 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 31 H 0.03 0.43 6.50 -51.93 -0.34 0.09 16 32 H 0.07 1.02 8.02 -51.93 -0.42 0.61 16 33 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.06 1.28 7.99 -51.93 -0.41 0.86 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.48 6.43 -51.93 -0.33 0.14 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.08 1.72 6.21 -51.93 -0.32 1.40 16 39 H 0.03 0.47 6.52 -51.93 -0.34 0.13 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -31.27 306.47 -7.91 -39.18 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.24 Total: -1.12 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -0.48 Total: -15.49 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.36 Total: -37.71 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.44 Total: -6.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.27 -7.91 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127946890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.756 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds