Wall clock time and date at job start Sun Mar 29 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47100 * 2 1 4 4 C 1.53003 * 109.57246 * 59.55442 * 3 2 1 5 5 O 1.42898 * 109.47227 * 54.54302 * 4 3 2 6 6 C 1.53114 * 109.52237 * 299.39502 * 3 2 1 7 7 C 1.53039 * 109.27920 * 297.74352 * 6 3 2 8 8 N 1.46843 * 109.52504 * 300.82626 * 7 6 3 9 9 C 1.46897 * 110.99815 * 185.83715 * 8 7 6 10 10 C 1.53007 * 109.47234 * 169.99833 * 9 8 7 11 11 C 1.50696 * 109.47346 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99983 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00097 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99718 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00221 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47282 * 59.99649 * 15 13 11 17 17 H 1.48502 * 109.47180 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47108 * 300.00098 * 15 13 11 19 19 C 1.46844 * 111.20075 * 61.73950 * 8 7 6 20 20 C 1.53043 * 109.52121 * 298.25958 * 19 8 7 21 21 H 1.08998 * 109.47292 * 304.71078 * 1 2 3 22 22 H 1.08998 * 109.47062 * 64.71097 * 1 2 3 23 23 H 1.08998 * 109.46751 * 184.70749 * 1 2 3 24 24 H 1.09006 * 109.47099 * 240.00499 * 2 1 3 25 25 H 1.08995 * 109.47317 * 120.00505 * 2 1 3 26 26 H 1.08996 * 109.47260 * 174.54899 * 4 3 2 27 27 H 1.09000 * 109.46477 * 294.54491 * 4 3 2 28 28 H 0.96699 * 113.99941 * 180.02562 * 5 4 3 29 29 H 1.09007 * 109.50418 * 177.80653 * 6 3 2 30 30 H 1.08994 * 109.50612 * 57.69269 * 6 3 2 31 31 H 1.08996 * 109.45823 * 60.84027 * 7 6 3 32 32 H 1.09000 * 109.46394 * 180.80539 * 7 6 3 33 33 H 1.08997 * 109.47785 * 289.99904 * 9 8 7 34 34 H 1.09001 * 109.47238 * 50.00070 * 9 8 7 35 35 H 1.09001 * 109.46890 * 299.99929 * 10 9 8 36 36 H 1.09001 * 109.46815 * 59.99977 * 10 9 8 37 37 H 0.97006 * 119.99564 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46147 * 178.24216 * 19 8 7 39 39 H 1.09001 * 109.46502 * 58.27255 * 19 8 7 40 40 H 1.08998 * 109.50003 * 299.23122 * 20 19 8 41 41 H 1.08999 * 109.49669 * 179.12188 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5221 2.1693 1.2428 5 8 1.8823 1.4302 2.4116 6 6 1.5427 2.1611 -1.2573 7 6 2.1136 1.4661 -2.4956 8 7 3.5807 1.4945 -2.4417 9 6 4.1634 0.9596 -3.6796 10 6 5.6690 1.2317 -3.6937 11 6 6.2666 0.6836 -4.9639 12 1 5.6358 0.1900 -5.6884 13 6 7.6189 0.8111 -5.2006 14 7 8.3872 1.4117 -4.3181 15 14 8.3599 0.1311 -6.7747 16 1 7.7270 0.7906 -7.9450 17 1 9.8213 0.3942 -6.7879 18 1 8.1204 -1.3330 -6.8423 19 6 4.0832 0.7697 -1.2676 20 6 3.5711 1.4440 0.0073 21 1 -0.3634 0.5852 0.8448 22 1 -0.3633 0.4390 -0.9292 23 1 -0.3633 -1.0242 0.0843 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.9635 3.1647 1.2920 27 1 0.4369 2.2554 1.1875 28 1 1.5853 1.8331 3.2389 29 1 1.8736 3.1995 -1.2379 30 1 0.4538 2.1261 -1.2898 31 1 1.7711 0.4317 -2.5216 32 1 1.7729 1.9840 -3.3922 33 1 3.9880 -0.1150 -3.7291 34 1 3.6986 1.4435 -4.5386 35 1 5.8444 2.3064 -3.6444 36 1 6.1337 0.7478 -2.8347 37 1 9.3386 1.5011 -4.4845 38 1 5.1731 0.7818 -1.2723 39 1 3.7314 -0.2615 -1.2993 40 1 3.9340 2.4710 0.0467 41 1 3.9315 0.8965 0.8783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127946890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:15 Heat of formation + Delta-G solvation = -92.345309 kcal Electronic energy + Delta-G solvation = -18332.438010 eV Core-core repulsion = 15631.326791 eV Total energy + Delta-G solvation = -2701.111219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02231 -38.00040 -36.12003 -34.88087 -32.37785 -31.92621 -30.60398 -27.95771 -25.83051 -24.99150 -23.83781 -22.86797 -21.65078 -18.97898 -18.55379 -18.13184 -16.87697 -16.56170 -16.28546 -16.03542 -15.66758 -15.28601 -14.88777 -14.38175 -14.36610 -14.04438 -13.71946 -13.30929 -13.14628 -12.95540 -12.92054 -12.73727 -12.60061 -12.41503 -12.07918 -11.87004 -11.80775 -11.53031 -11.31544 -11.16344 -11.07294 -10.92309 -10.66747 -10.51662 -9.09973 -8.20061 -6.31915 1.39502 1.43179 1.51136 2.40189 3.09365 3.13022 3.37483 3.76076 3.82388 4.03017 4.24067 4.26626 4.32929 4.38926 4.49954 4.55825 4.61131 4.68681 4.69929 4.74777 4.78590 4.85505 4.94079 4.97487 5.06936 5.13536 5.13927 5.22610 5.32136 5.38035 5.42393 5.46458 5.60777 5.67952 5.79086 6.11910 6.34756 6.38289 6.85039 7.01986 7.37171 8.92036 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.046003 B = 0.004731 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.512241 B = 5917.452760 C = 6172.030480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.054 4.054 4 C 0.090 3.910 5 O -0.586 6.586 6 C -0.098 4.098 7 C 0.053 3.947 8 N -0.548 5.548 9 C 0.079 3.921 10 C 0.037 3.963 11 C -0.547 4.547 12 H 0.060 0.940 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.265 1.265 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.057 3.943 20 C -0.092 4.092 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.393 0.607 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.065 0.935 35 H -0.009 1.009 36 H -0.009 1.009 37 H 0.264 0.736 38 H 0.048 0.952 39 H 0.027 0.973 40 H 0.058 0.942 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.808 0.637 10.997 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.054 4.054 4 C 0.013 3.987 5 O -0.394 6.394 6 C -0.136 4.136 7 C -0.075 4.075 8 N -0.273 5.273 9 C -0.048 4.048 10 C 0.000 4.000 11 C -0.585 4.585 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.071 4.071 20 C -0.130 4.130 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.242 0.758 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.240 0.785 10.634 20.271 hybrid contribution 0.626 -0.750 -0.455 1.078 sum -16.614 0.035 10.179 19.485 Atomic orbital electron populations 1.21808 0.94359 1.01865 1.02277 1.21479 0.97053 0.95323 1.00740 1.20620 0.94201 0.96186 0.94437 1.22176 0.98859 0.93316 0.84349 1.86461 1.82333 1.53390 1.17174 1.21597 1.00854 0.99313 0.91838 1.22163 0.86615 0.99226 0.99446 1.61955 1.07420 1.55535 1.02360 1.21956 0.96145 0.95675 0.91052 1.18914 0.90911 0.95028 0.95176 1.21604 0.93851 1.37659 1.05395 0.92190 1.25980 0.97752 0.95431 1.00472 1.70117 1.05683 1.44171 1.37245 0.85468 0.77104 0.79060 0.79199 1.18991 1.20724 1.19222 1.22053 0.99063 0.94894 0.91040 1.21505 0.95642 1.00540 0.95348 0.91605 0.92068 0.92840 0.93770 0.92495 0.93472 0.91495 0.75760 0.91358 0.88725 0.94917 0.90571 0.96663 0.91656 0.99028 0.99058 0.92746 0.93365 0.95530 0.92314 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.21 71.98 0.66 -1.92 16 2 C -0.11 -2.53 4.20 30.60 0.13 -2.41 16 3 C -0.05 -1.27 0.38 -52.10 -0.02 -1.29 16 4 C 0.09 1.64 5.40 71.98 0.39 2.03 16 5 O -0.59 -10.92 12.39 -148.98 -1.85 -12.76 16 6 C -0.10 -2.24 4.61 30.65 0.14 -2.10 16 7 C 0.05 1.54 5.21 86.33 0.45 1.99 16 8 N -0.55 -20.90 4.66 -896.37 -4.17 -25.07 16 9 C 0.08 3.54 4.90 86.31 0.42 3.97 16 10 C 0.04 2.08 4.90 29.85 0.15 2.22 16 11 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 12 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 13 C 0.00 0.09 5.46 84.65 0.46 0.56 16 14 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 15 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C 0.06 2.14 5.04 86.33 0.44 2.57 16 20 C -0.09 -2.80 4.76 30.65 0.15 -2.65 16 21 H 0.07 1.01 6.31 -2.39 -0.02 1.00 16 22 H 0.06 1.00 6.65 -2.39 -0.02 0.98 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.04 1.19 4.92 -2.38 -0.01 1.18 16 25 H 0.06 1.45 7.57 -2.39 -0.02 1.43 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.93 6.63 -2.39 -0.02 0.91 16 28 H 0.39 3.60 9.12 -74.06 -0.68 2.92 16 29 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.09 1.63 6.44 -2.39 -0.02 1.62 16 31 H 0.03 0.94 6.50 -2.39 -0.02 0.93 16 32 H 0.08 2.12 8.02 -2.39 -0.02 2.10 16 33 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 34 H 0.06 2.82 7.99 -2.39 -0.02 2.80 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 36 H -0.01 -0.53 6.43 -2.39 -0.02 -0.55 16 37 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 38 H 0.05 2.11 6.21 -2.39 -0.01 2.10 16 39 H 0.03 0.98 6.52 -2.39 -0.02 0.96 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.00 7.91 -2.39 -0.02 1.98 16 Total: -1.00 -68.81 306.47 0.21 -68.60 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.33 Total: 9.18 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.60 Total: -29.01 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -3.89 Total: -83.17 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -1.85 Total: -12.76 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -68.81 0.21 -68.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127946890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.745 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds