Wall clock time and date at job start Sun Mar 29 2020 22:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46919 * 2 1 4 4 C 1.52996 * 109.47560 * 240.00061 * 2 1 3 5 5 C 1.50700 * 109.47331 * 59.99559 * 4 2 1 6 6 H 1.08002 * 119.99502 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00230 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99687 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00300 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46911 * 89.99762 * 9 7 5 11 11 H 1.48488 * 109.47443 * 210.00223 * 9 7 5 12 12 H 1.48502 * 109.47047 * 330.00618 * 9 7 5 13 13 C 1.52998 * 109.47115 * 119.99557 * 2 1 3 14 14 N 1.46901 * 109.47294 * 309.53874 * 13 2 1 15 15 C 1.46847 * 111.00220 * 82.50260 * 14 13 2 16 16 C 1.53032 * 109.52696 * 174.16181 * 15 14 13 17 17 C 1.53124 * 109.28006 * 59.17704 * 16 15 14 18 18 C 1.53119 * 109.16153 * 302.35056 * 17 16 15 19 19 H 1.09001 * 109.50286 * 297.71263 * 18 17 16 20 20 O 1.42897 * 109.50089 * 177.63018 * 18 17 16 21 21 C 1.46849 * 110.99985 * 318.29672 * 14 13 2 22 22 H 1.08998 * 109.47438 * 306.96067 * 1 2 3 23 23 H 1.08999 * 109.47050 * 66.96550 * 1 2 3 24 24 H 1.09003 * 109.46608 * 186.96498 * 1 2 3 25 25 H 1.08995 * 109.47336 * 144.32202 * 3 2 1 26 26 H 1.09001 * 109.46882 * 264.32961 * 3 2 1 27 27 H 1.09008 * 109.46914 * 24.32162 * 3 2 1 28 28 H 1.08993 * 109.47170 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.46457 * 300.00232 * 4 2 1 30 30 H 0.97005 * 119.99518 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47629 * 189.53783 * 13 2 1 32 32 H 1.08998 * 109.47076 * 69.53759 * 13 2 1 33 33 H 1.08996 * 109.46274 * 294.17817 * 15 14 13 34 34 H 1.09003 * 109.45968 * 54.15909 * 15 14 13 35 35 H 1.08998 * 109.50560 * 179.11913 * 16 15 14 36 36 H 1.09009 * 109.50323 * 299.20103 * 16 15 14 37 37 H 1.09005 * 109.51408 * 62.25090 * 17 16 15 38 38 H 1.09000 * 109.52582 * 182.44003 * 17 16 15 39 39 H 0.96693 * 114.00405 * 60.00610 * 20 18 17 40 40 H 1.09007 * 109.46106 * 305.85378 * 21 14 13 41 41 H 1.08993 * 109.46699 * 65.82139 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6259 -1.5521 -3.8525 9 14 1.2473 0.3978 -5.2572 10 1 2.2252 1.4395 -5.6620 11 1 1.0820 -0.5816 -6.3610 12 1 -0.0608 1.0353 -4.9611 13 6 2.0400 -0.7211 1.2493 14 7 1.3720 -0.1739 2.4376 15 6 0.0524 -0.7888 2.6297 16 6 -0.5502 -0.3047 3.9504 17 6 -0.6771 1.2210 3.9190 18 6 0.7031 1.8351 3.6695 19 1 1.3712 1.5744 4.4904 20 8 0.5844 3.2565 3.5839 21 6 1.2694 1.2888 2.3569 22 1 -0.3634 0.6179 0.8211 23 1 -0.3633 0.4021 -0.9457 24 1 -0.3633 -1.0201 0.1246 25 1 2.9481 1.5069 0.5993 26 1 2.2568 1.7512 -1.0227 27 1 1.2781 2.0973 0.4233 28 1 3.1301 -0.7216 -1.2489 29 1 1.6767 -1.7489 -1.2491 30 1 2.8603 -1.8834 -4.7336 31 1 3.1166 -0.5761 1.3386 32 1 1.8224 -1.7861 1.1683 33 1 -0.6033 -0.5063 1.8061 34 1 0.1574 -1.8735 2.6546 35 1 -1.5363 -0.7491 4.0851 36 1 0.0977 -0.5996 4.7759 37 1 -1.3562 1.5135 3.1180 38 1 -1.0657 1.5739 4.8743 39 1 0.2285 3.6703 4.3821 40 1 2.2584 1.7132 2.1835 41 1 0.6081 1.5617 1.5346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128001623.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:27 Heat of formation + Delta-G solvation = -29.032279 kcal Electronic energy + Delta-G solvation = -18965.747911 eV Core-core repulsion = 16267.382151 eV Total energy + Delta-G solvation = -2698.365760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19990 -37.15329 -35.05702 -32.78236 -31.33419 -30.02137 -27.31705 -26.74634 -26.44260 -23.32410 -22.29874 -21.98653 -19.59336 -18.20048 -17.18936 -16.13040 -15.60326 -15.16096 -14.97681 -14.36210 -14.28829 -13.71873 -13.36242 -13.10455 -12.89321 -12.51603 -12.16894 -12.09661 -11.52129 -11.31273 -11.08542 -10.97181 -10.84692 -10.66455 -10.60778 -10.49064 -10.33517 -10.18353 -9.77596 -9.70512 -9.65711 -9.32563 -8.93875 -8.32990 -7.54276 -5.97324 -3.97760 3.32389 3.39094 3.41778 3.92508 4.47452 4.65292 4.80203 4.91315 5.08440 5.31896 5.37833 5.49505 5.58543 5.64264 5.66752 5.77468 5.84866 5.87689 5.99761 6.04469 6.13995 6.19706 6.24495 6.32846 6.38259 6.48218 6.53703 6.67085 6.73759 7.09151 7.14168 7.31673 7.44910 7.51042 7.67027 7.69570 7.83273 8.01952 8.46388 9.07440 9.64975 11.13885 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037203 B = 0.006032 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.450517 B = 4640.547949 C = 4882.276350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 C -0.150 4.150 4 C 0.037 3.963 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.065 3.935 14 N -0.532 5.532 15 C 0.022 3.978 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.102 3.898 19 H 0.056 0.944 20 O -0.568 6.568 21 C 0.036 3.964 22 H 0.047 0.953 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.016 0.984 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.374 0.626 40 H 0.085 0.915 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 4.287 15.464 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.206 4.206 4 C 0.000 4.000 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.063 4.063 14 N -0.256 5.256 15 C -0.106 4.106 16 C -0.151 4.151 17 C -0.190 4.190 18 C 0.043 3.957 19 H 0.074 0.926 20 O -0.372 6.372 21 C -0.091 4.091 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.220 0.780 40 H 0.103 0.897 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.842 3.942 15.158 16.393 hybrid contribution -0.979 0.572 -1.033 1.534 sum -5.820 4.514 14.124 15.929 Atomic orbital electron populations 1.22358 0.96249 1.00137 1.01262 1.21189 0.94872 0.96063 0.96988 1.22575 0.99344 0.96005 1.02701 1.19099 0.96121 0.94938 0.89886 1.21231 1.30879 1.11914 0.90705 0.92398 1.25012 0.95392 0.95089 0.99033 1.69968 1.37235 1.23073 1.23316 0.86673 0.79235 0.79442 0.83128 1.20753 1.21353 1.19996 1.22422 0.98323 0.98522 0.86998 1.62087 1.19793 1.04105 1.39653 1.22755 0.91253 0.99154 0.97424 1.21518 1.00410 0.94597 0.98562 1.22308 0.98272 0.96777 1.01620 1.21905 0.95018 0.79750 0.99041 0.92572 1.86496 1.87719 1.20135 1.42874 1.22941 1.02429 0.88421 0.95321 0.93510 0.91541 0.93585 0.93889 0.91287 0.92953 0.96577 0.96814 0.93133 0.91100 0.91339 0.91434 0.91097 0.91701 0.91576 0.91462 0.92246 0.77996 0.89672 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 6.31 37.16 0.23 -2.45 16 2 C -0.09 -1.77 0.53 -154.51 -0.08 -1.86 16 3 C -0.15 -2.87 7.11 37.16 0.26 -2.61 16 4 C 0.04 0.93 4.00 -27.89 -0.11 0.82 16 5 C -0.51 -13.90 7.09 -34.44 -0.24 -14.15 16 6 H 0.06 1.55 6.17 -52.49 -0.32 1.23 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 9 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.13 4.91 -3.82 -0.02 1.11 16 14 N -0.53 -8.12 4.86 -234.67 -1.14 -9.26 16 15 C 0.02 0.30 4.77 -3.84 -0.02 0.28 16 16 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 17 C -0.15 -1.68 5.63 -26.61 -0.15 -1.83 16 18 C 0.10 1.29 3.63 -26.65 -0.10 1.20 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 O -0.57 -7.06 13.32 -35.23 -0.47 -7.53 16 21 C 0.04 0.54 3.09 -3.83 -0.01 0.53 16 22 H 0.05 0.78 3.79 -51.93 -0.20 0.59 16 23 H 0.07 1.38 6.42 -51.93 -0.33 1.05 16 24 H 0.05 0.84 7.24 -51.93 -0.38 0.46 16 25 H 0.04 0.77 6.23 -51.93 -0.32 0.45 16 26 H 0.07 1.49 6.37 -51.93 -0.33 1.16 16 27 H 0.05 0.94 5.11 -51.92 -0.27 0.67 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 32 H 0.07 1.20 7.72 -51.93 -0.40 0.80 16 33 H 0.07 0.99 3.76 -51.93 -0.20 0.79 16 34 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.37 2.86 9.08 45.56 0.41 3.27 16 40 H 0.09 1.37 6.02 -51.93 -0.31 1.06 16 41 H 0.08 1.31 2.77 -51.93 -0.14 1.16 16 LS Contribution 292.72 15.07 4.41 4.41 Total: -1.00 -29.86 292.72 -7.68 -37.54 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.70 Total: 3.15 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -0.49 Total: -18.91 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.40 Total: -35.31 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.47 Total: -7.53 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.86 -7.68 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128001623.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.511 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds