Wall clock time and date at job start Sun Mar 29 2020 22:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47145 * 2 1 4 4 C 1.53002 * 109.47233 * 119.99968 * 2 1 3 5 5 C 1.50697 * 109.47307 * 300.00123 * 4 2 1 6 6 H 1.08007 * 119.99830 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99933 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99630 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47509 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47140 * 120.00157 * 9 7 5 12 12 H 1.48500 * 109.47156 * 239.99732 * 9 7 5 13 13 C 1.53000 * 109.47085 * 240.00068 * 2 1 3 14 14 N 1.46904 * 109.46947 * 66.28689 * 13 2 1 15 15 C 1.46846 * 111.00032 * 330.21724 * 14 13 2 16 16 C 1.53032 * 109.52329 * 185.84195 * 15 14 13 17 17 C 1.53119 * 109.27711 * 300.82092 * 16 15 14 18 18 O 1.42899 * 109.57272 * 177.59039 * 17 16 15 19 19 C 1.53114 * 109.15925 * 57.65574 * 17 16 15 20 20 C 1.46843 * 111.00190 * 94.43092 * 14 13 2 21 21 H 1.09002 * 109.46959 * 257.21969 * 1 2 3 22 22 H 1.08993 * 109.47462 * 17.22026 * 1 2 3 23 23 H 1.09001 * 109.46903 * 137.22504 * 1 2 3 24 24 H 1.08996 * 109.47547 * 223.93537 * 3 2 1 25 25 H 1.09004 * 109.47060 * 343.93867 * 3 2 1 26 26 H 1.09001 * 109.46974 * 103.93180 * 3 2 1 27 27 H 1.08998 * 109.46916 * 179.97438 * 4 2 1 28 28 H 1.08997 * 109.46844 * 60.00396 * 4 2 1 29 29 H 0.96991 * 119.99629 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47080 * 186.28230 * 13 2 1 31 31 H 1.09000 * 109.47361 * 306.28438 * 13 2 1 32 32 H 1.09002 * 109.46450 * 305.86420 * 15 14 13 33 33 H 1.08998 * 109.45873 * 65.82476 * 15 14 13 34 34 H 1.09002 * 109.50508 * 180.88034 * 16 15 14 35 35 H 1.08997 * 109.50350 * 60.76258 * 16 15 14 36 36 H 1.08998 * 109.52254 * 297.74817 * 17 16 15 37 37 H 0.96707 * 114.00078 * 60.28404 * 18 17 16 38 38 H 1.09003 * 109.49918 * 182.40200 * 19 17 16 39 39 H 1.08999 * 109.50075 * 62.28841 * 19 17 16 40 40 H 1.09005 * 109.46237 * 294.17646 * 20 14 13 41 41 H 1.09005 * 109.46573 * 54.15200 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5378 -0.0109 2.4797 6 1 0.9164 0.8670 2.3806 7 6 1.8713 -0.4817 3.7320 8 7 2.6275 -1.5510 3.8526 9 14 1.2481 0.3985 5.2572 10 1 0.4226 1.5649 4.8531 11 1 0.4239 -0.5356 6.0656 12 1 2.4027 0.8661 6.0654 13 6 2.0400 -0.7212 -1.2493 14 7 1.6781 0.0533 -2.4439 15 6 0.4363 0.8064 -2.2265 16 6 0.0131 1.4827 -3.5324 17 6 1.1276 2.4235 -3.9988 18 8 0.7628 3.0160 -5.2469 19 6 2.4215 1.6231 -4.1711 20 6 2.7749 0.9427 -2.8467 21 1 -0.3633 -0.2273 1.0022 22 1 -0.3634 0.9815 -0.3042 23 1 -0.3633 -0.7543 -0.6979 24 1 2.8588 1.5384 -0.7130 25 1 1.2300 2.1142 -0.2843 26 1 2.3944 1.7025 0.9974 27 1 3.1300 -0.7216 1.2490 28 1 1.6768 -1.7489 1.2492 29 1 2.8624 -1.8819 4.7335 30 1 3.1242 -0.8197 -1.1948 31 1 1.5878 -1.7113 -1.3073 32 1 -0.3491 0.1252 -1.8991 33 1 0.6009 1.5650 -1.4613 34 1 -0.9001 2.0544 -3.3669 35 1 -0.1650 0.7238 -4.2942 36 1 1.2793 3.2055 -3.2548 37 1 -0.0498 3.5392 -5.2114 38 1 3.2290 2.2951 -4.4619 39 1 2.2812 0.8664 -4.9430 40 1 2.9286 1.7007 -2.0786 41 1 3.6881 0.3604 -2.9701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128067108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:24 Heat of formation + Delta-G solvation = -42.989039 kcal Electronic energy + Delta-G solvation = -18838.168420 eV Core-core repulsion = 16139.197450 eV Total energy + Delta-G solvation = -2698.970970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.46499 -38.51039 -36.25381 -34.42752 -32.41111 -31.95950 -29.07438 -28.22869 -27.73298 -24.89754 -23.79048 -23.07479 -20.64334 -19.85428 -18.29796 -18.11507 -16.76111 -16.50228 -16.45754 -15.87190 -15.57234 -15.32166 -14.71359 -14.40787 -14.12407 -14.02953 -13.74865 -13.42530 -12.98733 -12.76521 -12.61446 -12.50598 -12.48106 -12.16095 -12.09563 -11.87670 -11.72539 -11.50686 -11.29106 -11.19221 -11.01895 -10.91620 -10.52332 -10.42483 -8.90897 -8.14523 -6.21837 1.38669 1.40164 1.51576 2.42358 3.08360 3.18782 3.35156 3.87341 3.89517 3.99111 4.11203 4.20933 4.28160 4.34804 4.42107 4.63243 4.69163 4.76795 4.83219 4.85864 4.89618 4.92500 5.02394 5.05369 5.14091 5.20694 5.23046 5.27148 5.36415 5.47487 5.54372 5.58156 5.67623 5.87305 5.89979 6.22272 6.31197 6.35292 6.91821 6.93319 7.45138 8.97117 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044640 B = 0.005527 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.087348 B = 5065.159006 C = 5245.038877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.148 4.148 4 C 0.043 3.957 5 C -0.511 4.511 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.071 3.929 14 N -0.534 5.534 15 C 0.013 3.987 16 C -0.144 4.144 17 C 0.105 3.895 18 O -0.583 6.583 19 C -0.104 4.104 20 C 0.040 3.960 21 H 0.036 0.964 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.043 0.957 27 H -0.016 1.016 28 H -0.015 1.015 29 H 0.259 0.741 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.393 0.607 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 8.577 -14.434 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 C -0.204 4.204 4 C 0.006 3.994 5 C -0.549 4.549 6 H 0.082 0.918 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.780 3.220 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.057 4.057 14 N -0.257 5.257 15 C -0.114 4.114 16 C -0.182 4.182 17 C 0.046 3.954 18 O -0.392 6.392 19 C -0.142 4.142 20 C -0.088 4.088 21 H 0.055 0.945 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.242 0.758 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.961 7.846 -14.913 17.310 hybrid contribution -0.271 0.584 2.088 2.185 sum -4.233 8.430 -12.825 15.920 Atomic orbital electron populations 1.22644 0.94403 1.01522 1.00761 1.21022 0.96256 0.95877 0.95029 1.22533 1.00868 0.95344 1.01682 1.19045 0.93940 0.94105 0.92344 1.21589 1.30047 1.11823 0.91434 0.91821 1.25900 0.95742 0.95888 1.02521 1.70110 1.38843 1.24919 1.23972 0.85547 0.78110 0.78810 0.79495 1.18486 1.20885 1.20922 1.22264 0.99476 0.96711 0.87290 1.62253 1.03986 1.26380 1.33086 1.23547 0.93080 0.97937 0.96807 1.22343 0.98717 0.99281 0.97819 1.21826 0.94556 0.93819 0.85187 1.86461 1.48515 1.70739 1.33435 1.21481 0.96652 0.98755 0.97293 1.22508 0.94369 0.95742 0.96180 0.94499 0.90897 0.92180 0.91550 0.91466 0.93804 0.99796 0.99685 0.93171 0.92531 0.91908 0.88718 0.91644 0.89721 0.91730 0.92601 0.75759 0.90531 0.91634 0.92920 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 6.97 71.98 0.50 -4.25 16 2 C -0.08 -3.06 0.53 -52.18 -0.03 -3.09 16 3 C -0.15 -5.16 7.43 71.98 0.53 -4.62 16 4 C 0.04 2.20 3.92 29.85 0.12 2.32 16 5 C -0.51 -27.73 6.69 25.60 0.17 -27.55 16 6 H 0.06 3.32 6.85 -2.91 -0.02 3.30 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.07 2.39 4.81 86.30 0.42 2.81 16 14 N -0.53 -15.06 4.86 -896.37 -4.35 -19.42 16 15 C 0.01 0.32 3.31 86.32 0.29 0.61 16 16 C -0.14 -2.97 5.72 30.65 0.18 -2.79 16 17 C 0.10 2.17 3.54 30.67 0.11 2.28 16 18 O -0.58 -11.57 13.33 -148.98 -1.99 -13.55 16 19 C -0.10 -2.35 5.75 30.64 0.18 -2.17 16 20 C 0.04 1.00 4.87 86.32 0.42 1.42 16 21 H 0.04 1.49 6.52 -2.39 -0.02 1.48 16 22 H 0.07 2.15 5.17 -2.39 -0.01 2.13 16 23 H 0.06 1.91 5.93 -2.39 -0.01 1.89 16 24 H 0.07 2.09 4.22 -2.39 -0.01 2.08 16 25 H 0.07 2.03 5.34 -2.39 -0.01 2.02 16 26 H 0.04 1.79 6.55 -2.39 -0.02 1.77 16 27 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 28 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.26 14.89 8.31 -92.72 -0.77 14.12 16 30 H 0.06 1.97 7.57 -2.39 -0.02 1.95 16 31 H 0.06 2.21 8.01 -2.39 -0.02 2.19 16 32 H 0.09 2.48 4.72 -2.39 -0.01 2.47 16 33 H 0.07 1.72 2.94 -2.39 -0.01 1.71 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.39 4.33 9.09 -74.05 -0.67 3.66 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.36 4.78 -2.38 -0.01 1.35 16 41 H 0.08 1.91 7.91 -2.38 -0.02 1.89 16 Total: -1.00 -63.71 292.21 -0.33 -64.04 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.36 Total: 14.30 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 3.34 Total: -34.79 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -4.07 Total: -75.98 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -1.99 Total: -13.55 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -63.71 -0.33 -64.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128067108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.054 kcal (2) G-P(sol) polarization free energy of solvation -63.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds