Wall clock time and date at job start Sun Mar 29 2020 23:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47051 * 2 1 4 4 H 1.09004 * 109.47327 * 304.04175 * 3 2 1 5 5 C 1.50708 * 109.47430 * 184.04640 * 3 2 1 6 6 H 1.07995 * 119.99794 * 244.96179 * 5 3 2 7 7 C 1.37873 * 120.00002 * 64.95243 * 5 3 2 8 8 N 1.31512 * 120.00073 * 195.81215 * 7 5 3 9 9 Si 1.86804 * 119.99978 * 15.81536 * 7 5 3 10 10 H 1.48506 * 109.46878 * 87.15788 * 9 7 5 11 11 H 1.48496 * 109.47226 * 207.15452 * 9 7 5 12 12 H 1.48504 * 109.47298 * 327.15904 * 9 7 5 13 13 N 1.46905 * 109.47427 * 64.04542 * 3 2 1 14 14 C 1.46896 * 110.99680 * 258.79785 * 13 3 2 15 15 C 1.53177 * 109.54565 * 274.67146 * 14 13 3 16 16 C 1.53100 * 109.15791 * 183.24852 * 15 14 13 17 17 H 1.09001 * 109.49333 * 177.51364 * 16 15 14 18 18 C 1.53001 * 109.40361 * 297.48906 * 16 15 14 19 19 O 1.42899 * 109.49261 * 57.47256 * 16 15 14 20 20 C 1.42910 * 114.09599 * 298.89244 * 19 16 15 21 21 H 1.08994 * 109.48798 * 301.16500 * 20 19 16 22 22 C 1.52995 * 109.47831 * 181.13885 * 20 19 16 23 23 C 1.53086 * 109.41435 * 61.15501 * 20 19 16 24 24 H 1.09001 * 109.46924 * 174.55720 * 1 2 3 25 25 H 1.09001 * 109.47244 * 54.56188 * 1 2 3 26 26 H 1.08996 * 109.47290 * 294.55876 * 1 2 3 27 27 H 1.09003 * 109.47434 * 119.99860 * 2 1 3 28 28 H 1.09002 * 109.47244 * 240.00166 * 2 1 3 29 29 H 0.97003 * 119.99893 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99348 * 22.75341 * 13 3 2 31 31 H 1.08997 * 109.54538 * 34.85306 * 14 13 3 32 32 H 1.09006 * 109.52033 * 303.06408 * 15 14 13 33 33 H 1.08995 * 109.51933 * 63.25049 * 15 14 13 34 34 H 1.08996 * 109.47227 * 179.97438 * 18 16 15 35 35 H 1.09000 * 109.47569 * 299.99258 * 18 16 15 36 36 H 1.09005 * 109.47315 * 59.98981 * 18 16 15 37 37 H 1.09003 * 109.47541 * 300.05513 * 22 20 19 38 38 H 1.09001 * 109.47215 * 60.05478 * 22 20 19 39 39 H 1.09001 * 109.47264 * 180.02562 * 22 20 19 40 40 H 1.09004 * 109.52307 * 182.48617 * 23 20 19 41 41 H 1.09000 * 109.57771 * 62.33089 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6186 1.9768 -0.8516 5 6 3.5437 1.4437 -0.1003 6 1 4.1391 1.8200 0.7184 7 6 4.1592 0.9644 -1.2370 8 7 5.4414 0.6726 -1.2173 9 14 3.1719 0.7294 -2.8054 10 1 3.1571 1.9989 -3.5758 11 1 3.7937 -0.3405 -3.6261 12 1 1.7799 0.3433 -2.4609 13 7 1.6317 2.1062 1.2453 14 6 0.4653 2.9711 1.0229 15 6 0.9322 4.3446 0.5310 16 6 -0.2828 5.2638 0.3797 17 1 0.0477 6.2559 0.0722 18 6 -1.2260 4.6894 -0.6792 19 8 -0.9693 5.3562 1.6296 20 6 -1.4701 4.1084 2.1138 21 1 -2.1577 3.6841 1.3823 22 6 -2.2065 4.3328 3.4360 23 6 -0.3027 3.1436 2.3369 24 1 -0.3633 -1.0231 -0.0975 25 1 -0.3634 0.5959 -0.8373 26 1 -0.3633 0.4271 0.9346 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 5.8743 0.3350 -2.0170 30 1 1.4476 1.4304 1.9716 31 1 -0.1870 2.5187 0.2760 32 1 1.6248 4.7745 1.2546 33 1 1.4309 4.2363 -0.4321 34 1 -2.0917 5.3428 -0.7875 35 1 -0.7022 4.6189 -1.6326 36 1 -1.5562 3.6971 -0.3719 37 1 -1.5189 4.7576 4.1674 38 1 -3.0377 5.0198 3.2770 39 1 -2.5881 3.3810 3.8055 40 1 -0.6863 2.1772 2.6642 41 1 0.3644 3.5475 3.0985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130072704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:24 Heat of formation + Delta-G solvation = -59.977361 kcal Electronic energy + Delta-G solvation = -18919.421159 eV Core-core repulsion = 16219.713519 eV Total energy + Delta-G solvation = -2699.707639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82059 -36.74528 -33.37061 -33.25307 -31.89942 -30.31247 -28.55729 -26.72127 -26.28628 -22.78003 -22.54262 -21.32545 -19.80757 -19.04517 -16.80423 -16.08718 -15.79796 -15.33596 -14.90561 -14.37757 -14.04205 -13.78247 -13.12303 -12.90612 -12.81728 -12.69491 -12.55683 -11.99928 -11.90464 -11.80100 -11.74613 -11.51170 -11.16815 -10.92120 -10.79291 -10.75842 -10.53366 -10.20667 -9.93986 -9.88085 -9.50401 -9.25891 -9.17745 -8.36067 -7.32787 -6.05004 -3.96074 3.27017 3.35738 3.38076 3.87471 4.43748 4.73456 4.93125 5.01793 5.11150 5.21381 5.24536 5.31329 5.49196 5.54045 5.58786 5.62945 5.69565 5.75019 5.82004 5.88078 5.96839 5.98725 6.06641 6.09910 6.16417 6.24583 6.38179 6.46553 6.51103 6.56637 6.73602 6.79031 6.91293 7.19313 7.43271 7.79080 7.98333 8.37444 8.74574 9.13107 9.62094 11.08641 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.007160 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.047227 B = 3909.632210 C = 4078.288684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.153 4.153 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.667 5.667 14 C 0.086 3.914 15 C -0.135 4.135 16 C 0.087 3.913 17 H 0.099 0.901 18 C -0.186 4.186 19 O -0.377 6.377 20 C 0.086 3.914 21 H 0.056 0.944 22 C -0.143 4.143 23 C -0.151 4.151 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.262 0.738 30 H 0.328 0.672 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.345 5.041 4.134 16.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.192 4.192 3 C 0.086 3.914 4 H 0.040 0.960 5 C -0.536 4.536 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.684 3.316 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.180 1.180 13 N -0.297 5.297 14 C -0.025 4.025 15 C -0.173 4.173 16 C 0.029 3.971 17 H 0.117 0.883 18 C -0.244 4.244 19 O -0.297 6.297 20 C 0.028 3.972 21 H 0.074 0.926 22 C -0.200 4.200 23 C -0.189 4.189 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.743 5.644 4.057 16.300 hybrid contribution -0.990 -1.199 -1.352 2.060 sum -15.733 4.445 2.705 16.571 Atomic orbital electron populations 1.21937 0.98650 1.00152 1.00339 1.22641 0.92631 1.01831 1.02093 1.19581 0.96532 0.87946 0.87385 0.96019 1.20990 0.88978 1.40459 1.03132 0.90222 1.24899 0.94693 0.94852 0.98564 1.69973 1.10737 1.43923 1.28679 0.87343 0.81663 0.77976 0.84649 1.20641 1.21547 1.18045 1.60638 1.33493 1.25468 1.10093 1.21593 0.91477 0.94456 0.94949 1.22187 0.97060 0.95011 1.03084 1.22223 0.91610 0.99898 0.83331 0.88279 1.22469 1.00293 1.01713 0.99895 1.87923 1.74094 1.30053 1.37610 1.22016 0.94329 0.85246 0.95617 0.92624 1.21752 1.00227 1.01977 0.96061 1.22429 0.97791 0.99434 0.99209 0.93988 0.93773 0.93721 0.92354 0.91981 0.92832 0.85441 0.94204 0.90494 0.90635 0.92362 0.91458 0.92030 0.91809 0.92213 0.91400 0.91667 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.61 37.16 0.32 -2.29 16 2 C -0.15 -3.19 4.58 -26.74 -0.12 -3.32 16 3 C 0.19 4.43 1.59 -68.86 -0.11 4.32 16 4 H 0.02 0.52 5.89 -51.93 -0.31 0.21 16 5 C -0.50 -13.86 9.27 -34.44 -0.32 -14.17 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 7 C 0.07 2.04 5.33 -17.82 -0.10 1.94 16 8 N -0.89 -27.30 13.96 55.43 0.77 -26.52 16 9 Si 0.86 21.00 25.84 -169.99 -4.39 16.60 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.26 -5.86 5.50 56.52 0.31 -5.55 16 13 N -0.67 -13.23 5.88 -100.76 -0.59 -13.82 16 14 C 0.09 1.42 1.30 -67.53 -0.09 1.34 16 15 C -0.14 -2.25 5.12 -26.59 -0.14 -2.39 16 16 C 0.09 1.22 3.91 -26.68 -0.10 1.12 16 17 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 18 C -0.19 -2.36 8.65 37.16 0.32 -2.04 16 19 O -0.38 -5.47 10.24 -35.23 -0.36 -5.83 16 20 C 0.09 1.10 2.94 -26.69 -0.08 1.02 16 21 H 0.06 0.69 6.34 -51.93 -0.33 0.36 16 22 C -0.14 -1.48 9.56 37.15 0.36 -1.13 16 23 C -0.15 -2.10 4.69 -26.59 -0.12 -2.22 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.04 0.75 7.86 -51.93 -0.41 0.34 16 26 H 0.04 0.69 6.92 -51.93 -0.36 0.33 16 27 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 28 H 0.06 1.40 4.92 -51.93 -0.26 1.14 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.33 6.10 7.57 -39.29 -0.30 5.80 16 31 H 0.04 0.68 4.66 -51.93 -0.24 0.43 16 32 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.38 7.81 -51.93 -0.41 0.98 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.80 4.98 -51.93 -0.26 0.54 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -29.69 303.98 -7.33 -37.02 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.16 Total: 5.79 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -0.18 Total: -17.83 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.18 Total: -40.34 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.36 Total: -5.83 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.39 Total: 16.60 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.69 -7.33 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130072704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.957 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds