Wall clock time and date at job start Sun Mar 29 2020 23:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47051 * 2 1 4 4 H 1.09004 * 109.47327 * 304.04175 * 3 2 1 5 5 C 1.50708 * 109.47430 * 184.04640 * 3 2 1 6 6 H 1.07995 * 119.99794 * 244.96179 * 5 3 2 7 7 C 1.37873 * 120.00002 * 64.95243 * 5 3 2 8 8 N 1.31512 * 120.00073 * 195.81215 * 7 5 3 9 9 Si 1.86804 * 119.99978 * 15.81536 * 7 5 3 10 10 H 1.48506 * 109.46878 * 87.15788 * 9 7 5 11 11 H 1.48496 * 109.47226 * 207.15452 * 9 7 5 12 12 H 1.48504 * 109.47298 * 327.15904 * 9 7 5 13 13 N 1.46905 * 109.47427 * 64.04542 * 3 2 1 14 14 C 1.46896 * 110.99680 * 258.79785 * 13 3 2 15 15 C 1.53177 * 109.54565 * 274.67146 * 14 13 3 16 16 C 1.53100 * 109.15791 * 183.24852 * 15 14 13 17 17 H 1.09001 * 109.49333 * 177.51364 * 16 15 14 18 18 C 1.53001 * 109.40361 * 297.48906 * 16 15 14 19 19 O 1.42899 * 109.49261 * 57.47256 * 16 15 14 20 20 C 1.42910 * 114.09599 * 298.89244 * 19 16 15 21 21 H 1.08994 * 109.48798 * 301.16500 * 20 19 16 22 22 C 1.52995 * 109.47831 * 181.13885 * 20 19 16 23 23 C 1.53086 * 109.41435 * 61.15501 * 20 19 16 24 24 H 1.09001 * 109.46924 * 174.55720 * 1 2 3 25 25 H 1.09001 * 109.47244 * 54.56188 * 1 2 3 26 26 H 1.08996 * 109.47290 * 294.55876 * 1 2 3 27 27 H 1.09003 * 109.47434 * 119.99860 * 2 1 3 28 28 H 1.09002 * 109.47244 * 240.00166 * 2 1 3 29 29 H 0.97003 * 119.99893 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99348 * 22.75341 * 13 3 2 31 31 H 1.08997 * 109.54538 * 34.85306 * 14 13 3 32 32 H 1.09006 * 109.52033 * 303.06408 * 15 14 13 33 33 H 1.08995 * 109.51933 * 63.25049 * 15 14 13 34 34 H 1.08996 * 109.47227 * 179.97438 * 18 16 15 35 35 H 1.09000 * 109.47569 * 299.99258 * 18 16 15 36 36 H 1.09005 * 109.47315 * 59.98981 * 18 16 15 37 37 H 1.09003 * 109.47541 * 300.05513 * 22 20 19 38 38 H 1.09001 * 109.47215 * 60.05478 * 22 20 19 39 39 H 1.09001 * 109.47264 * 180.02562 * 22 20 19 40 40 H 1.09004 * 109.52307 * 182.48617 * 23 20 19 41 41 H 1.09000 * 109.57771 * 62.33089 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6186 1.9768 -0.8516 5 6 3.5437 1.4437 -0.1003 6 1 4.1391 1.8200 0.7184 7 6 4.1592 0.9644 -1.2370 8 7 5.4414 0.6726 -1.2173 9 14 3.1719 0.7294 -2.8054 10 1 3.1571 1.9989 -3.5758 11 1 3.7937 -0.3405 -3.6261 12 1 1.7799 0.3433 -2.4609 13 7 1.6317 2.1062 1.2453 14 6 0.4653 2.9711 1.0229 15 6 0.9322 4.3446 0.5310 16 6 -0.2828 5.2638 0.3797 17 1 0.0477 6.2559 0.0722 18 6 -1.2260 4.6894 -0.6792 19 8 -0.9693 5.3562 1.6296 20 6 -1.4701 4.1084 2.1138 21 1 -2.1577 3.6841 1.3823 22 6 -2.2065 4.3328 3.4360 23 6 -0.3027 3.1436 2.3369 24 1 -0.3633 -1.0231 -0.0975 25 1 -0.3634 0.5959 -0.8373 26 1 -0.3633 0.4271 0.9346 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 5.8743 0.3350 -2.0170 30 1 1.4476 1.4304 1.9716 31 1 -0.1870 2.5187 0.2760 32 1 1.6248 4.7745 1.2546 33 1 1.4309 4.2363 -0.4321 34 1 -2.0917 5.3428 -0.7875 35 1 -0.7022 4.6189 -1.6326 36 1 -1.5562 3.6971 -0.3719 37 1 -1.5189 4.7576 4.1674 38 1 -3.0377 5.0198 3.2770 39 1 -2.5881 3.3810 3.8055 40 1 -0.6863 2.1772 2.6642 41 1 0.3644 3.5475 3.0985 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130072704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:24 Heat of formation + Delta-G solvation = -80.556514 kcal Electronic energy + Delta-G solvation = -18920.313538 eV Core-core repulsion = 16219.713519 eV Total energy + Delta-G solvation = -2700.600018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99426 -38.31030 -34.99544 -34.27023 -33.80533 -31.59183 -29.93186 -28.32628 -27.48807 -24.44643 -23.75207 -22.55860 -21.53081 -20.22958 -18.81911 -17.18476 -17.11449 -16.86413 -16.39862 -15.82876 -15.43629 -15.22168 -14.75819 -14.42932 -14.22469 -13.79897 -13.55007 -13.53409 -13.34978 -12.93737 -12.83201 -12.66648 -12.61445 -12.53772 -12.40054 -12.23742 -11.89052 -11.68798 -11.48595 -11.41762 -11.23368 -10.92238 -10.53960 -10.35194 -8.93010 -8.26881 -6.22518 1.31765 1.35138 1.43486 2.35429 2.85396 3.05952 3.40679 3.80445 3.88069 4.00740 4.19510 4.24281 4.27577 4.35561 4.42948 4.45400 4.48281 4.50020 4.60086 4.67324 4.79311 4.89526 4.90499 5.00111 5.02637 5.07869 5.12124 5.16049 5.22676 5.26386 5.29217 5.36839 5.46506 5.53060 5.75412 6.11449 6.37691 6.75532 6.83019 6.85347 7.40319 8.90871 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.007160 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.047227 B = 3909.632210 C = 4078.288684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 C 0.203 3.797 4 H 0.019 0.981 5 C -0.503 4.503 6 H 0.028 0.972 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.923 3.077 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.226 1.226 13 N -0.682 5.682 14 C 0.087 3.913 15 C -0.135 4.135 16 C 0.091 3.909 17 H 0.109 0.891 18 C -0.182 4.182 19 O -0.388 6.388 20 C 0.083 3.917 21 H 0.068 0.932 22 C -0.139 4.139 23 C -0.144 4.144 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.263 0.737 30 H 0.335 0.665 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 4.835 3.795 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.190 4.190 3 C 0.094 3.906 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.047 0.953 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.747 3.253 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.149 1.149 13 N -0.313 5.313 14 C -0.023 4.023 15 C -0.174 4.174 16 C 0.033 3.967 17 H 0.126 0.874 18 C -0.239 4.239 19 O -0.308 6.308 20 C 0.025 3.975 21 H 0.086 0.914 22 C -0.197 4.197 23 C -0.182 4.182 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.399 5.446 3.743 19.549 hybrid contribution 0.231 -1.083 -1.122 1.576 sum -18.168 4.363 2.621 18.867 Atomic orbital electron populations 1.21838 0.94940 1.01916 1.01470 1.22486 0.95894 0.99552 1.01117 1.19315 0.93029 0.89686 0.88595 0.96286 1.21300 0.91836 1.39435 1.01615 0.95325 1.25748 0.95698 0.94720 1.02197 1.70130 1.12996 1.45902 1.29730 0.86256 0.81519 0.77848 0.79627 1.20405 1.21532 1.14854 1.60444 1.35976 1.25787 1.09111 1.21645 0.90502 0.93332 0.96808 1.22171 0.98052 0.96033 1.01145 1.22188 0.90750 0.99745 0.83976 0.87369 1.22424 1.00432 1.01930 0.99116 1.87928 1.73970 1.31159 1.37724 1.22205 0.93873 0.84299 0.97132 0.91428 1.21762 1.00050 1.03341 0.94501 1.22386 0.97798 1.00905 0.97074 0.91772 0.93437 0.91975 0.92873 0.93598 0.92822 0.84647 0.93466 0.92664 0.92889 0.90582 0.91505 0.92060 0.92426 0.91342 0.89372 0.89706 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.61 71.98 0.62 -3.73 16 2 C -0.15 -6.05 4.58 30.59 0.14 -5.91 16 3 C 0.20 9.20 1.59 44.17 0.07 9.27 16 4 H 0.02 0.89 5.89 -2.38 -0.01 0.87 16 5 C -0.50 -29.05 9.27 25.60 0.24 -28.81 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.78 5.33 84.65 0.45 1.23 16 8 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 9 Si 0.92 43.56 25.84 68.60 1.77 45.34 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 12 H -0.23 -9.47 5.50 99.48 0.55 -8.92 16 13 N -0.68 -26.89 5.88 -472.68 -2.78 -29.67 16 14 C 0.09 2.76 1.30 45.04 0.06 2.82 16 15 C -0.14 -4.49 5.12 30.69 0.16 -4.34 16 16 C 0.09 2.41 3.91 30.63 0.12 2.53 16 17 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 18 C -0.18 -4.09 8.65 71.98 0.62 -3.47 16 19 O -0.39 -10.38 10.24 -148.98 -1.53 -11.90 16 20 C 0.08 1.86 2.94 30.62 0.09 1.95 16 21 H 0.07 1.39 6.34 -2.39 -0.02 1.38 16 22 C -0.14 -2.43 9.56 71.98 0.69 -1.75 16 23 C -0.14 -3.66 4.69 30.68 0.14 -3.52 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.41 7.86 -2.39 -0.02 1.39 16 26 H 0.06 1.65 6.92 -2.39 -0.02 1.63 16 27 H 0.05 2.15 8.06 -2.39 -0.02 2.13 16 28 H 0.05 1.97 4.92 -2.39 -0.01 1.96 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.33 12.17 7.57 -89.69 -0.68 11.49 16 31 H 0.05 1.46 4.66 -2.39 -0.01 1.45 16 32 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.05 1.96 7.81 -2.39 -0.02 1.94 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.38 4.98 -2.38 -0.01 1.37 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -66.56 303.98 1.33 -65.23 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.16 Total: 24.43 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 3.40 Total: -33.74 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -2.48 Total: -89.36 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.53 Total: -11.90 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.77 Total: 45.34 kcal Total: -66.56 1.33 -65.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130072704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.323 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds