Wall clock time and date at job start Sun Mar 29 2020 22:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47114 * 2 1 4 4 C 1.52998 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47023 * 179.34910 * 4 3 2 6 6 C 1.46895 * 111.00052 * 297.27355 * 5 4 3 7 7 C 1.50702 * 109.46948 * 292.71132 * 6 5 4 8 8 H 1.07997 * 120.00216 * 355.03251 * 7 6 5 9 9 C 1.37884 * 120.00049 * 175.03430 * 7 6 5 10 10 N 1.31511 * 119.99765 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99936 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47375 * 59.99599 * 11 9 7 13 13 H 1.48500 * 109.47225 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47334 * 299.99733 * 11 9 7 15 15 C 1.46902 * 110.99651 * 61.22078 * 5 4 3 16 16 C 1.53001 * 109.46969 * 66.04872 * 15 5 4 17 17 H 1.09004 * 110.83150 * 308.64546 * 16 15 5 18 18 C 1.54812 * 110.91064 * 184.99646 * 16 15 5 19 19 C 1.54092 * 104.30617 * 220.98647 * 18 16 15 20 20 O 1.43742 * 107.29703 * 357.90324 * 19 18 16 21 21 C 1.44382 * 106.97313 * 26.51316 * 20 19 18 22 22 H 1.09004 * 109.46703 * 299.99746 * 1 2 3 23 23 H 1.08996 * 109.47271 * 59.99487 * 1 2 3 24 24 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46703 * 240.00254 * 2 1 3 26 26 H 1.09002 * 109.47068 * 120.00146 * 2 1 3 27 27 H 1.09004 * 109.46678 * 60.00227 * 3 2 1 28 28 H 1.08996 * 109.47470 * 300.00391 * 3 2 1 29 29 H 1.09000 * 109.46979 * 59.35468 * 4 3 2 30 30 H 1.08996 * 109.47179 * 299.34990 * 4 3 2 31 31 H 1.09001 * 109.47609 * 52.71361 * 6 5 4 32 32 H 1.09005 * 109.47121 * 172.71669 * 6 5 4 33 33 H 0.97003 * 119.99529 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.48024 * 306.04559 * 15 5 4 35 35 H 1.09005 * 109.47161 * 186.04438 * 15 5 4 36 36 H 1.09004 * 110.48774 * 102.24179 * 18 16 15 37 37 H 1.08999 * 110.48687 * 339.72911 * 18 16 15 38 38 H 1.09006 * 109.88194 * 117.32830 * 19 18 16 39 39 H 1.08997 * 109.87988 * 238.47591 * 19 18 16 40 40 H 1.08997 * 110.61860 * 78.44444 * 21 20 19 41 41 H 1.08994 * 110.61659 * 201.43959 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0598 2.8274 -0.0164 6 6 3.6422 3.5195 -1.2430 7 6 4.3418 2.9063 -2.4286 8 1 5.0873 2.1395 -2.2785 9 6 4.0302 3.3244 -3.7050 10 7 3.1227 4.2586 -3.8877 11 14 4.8968 2.5639 -5.1746 12 1 4.6351 1.1024 -5.2019 13 1 4.3865 3.1821 -6.4247 14 1 6.3585 2.8031 -5.0657 15 6 3.6132 3.5572 1.1778 16 6 4.2704 2.9528 2.4202 17 1 4.1272 1.8726 2.4479 18 6 3.7277 3.6152 3.7100 19 6 4.9728 3.7909 4.6007 20 8 6.0890 3.2284 3.8908 21 6 5.7790 3.3129 2.4832 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 3.9330 0.9187 -0.8850 30 1 3.9337 0.9386 0.8948 31 1 2.5638 3.4211 -1.3666 32 1 3.9050 4.5750 -1.1720 33 1 2.9032 4.5525 -4.7857 34 1 2.5296 3.4807 1.2664 35 1 3.8974 4.6059 1.0902 36 1 2.9998 2.9651 4.1955 37 1 3.2815 4.5834 3.4828 38 1 5.1483 4.8503 4.7878 39 1 4.8305 3.2645 5.5445 40 1 5.9462 4.3245 2.1134 41 1 6.3698 2.5935 1.9163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133233884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:02 Heat of formation + Delta-G solvation = -63.399313 kcal Electronic energy + Delta-G solvation = -18222.978019 eV Core-core repulsion = 15523.121993 eV Total energy + Delta-G solvation = -2699.856026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.35095 -37.38735 -34.02745 -32.94174 -31.79887 -29.30547 -28.30628 -26.70698 -24.48906 -23.30216 -22.31378 -21.12855 -20.46468 -19.01450 -16.51404 -16.21229 -15.39231 -15.31614 -14.96122 -14.59743 -14.48386 -13.89690 -13.45392 -13.43069 -12.75076 -12.48945 -12.19051 -12.17447 -11.50738 -11.35225 -11.25332 -11.09818 -10.99165 -10.77146 -10.74386 -10.57824 -10.52077 -10.43070 -10.23508 -9.90816 -9.62214 -9.44953 -9.18475 -8.41875 -7.15185 -6.01988 -4.02820 3.33562 3.37749 3.40753 4.15027 4.42430 4.67840 4.91074 4.99704 5.22217 5.24256 5.32423 5.33844 5.38436 5.49183 5.53936 5.76363 5.78871 5.83895 5.88773 5.98504 6.01916 6.07063 6.14169 6.16956 6.23596 6.24999 6.33682 6.47278 6.54068 6.55058 6.77064 6.95365 7.05978 7.31314 7.43718 7.81942 8.10653 8.20580 8.56414 9.05115 9.61296 11.08586 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.006944 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.356543 B = 4031.125300 C = 5072.274463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.158 4.158 4 C 0.065 3.935 5 N -0.535 5.535 6 C 0.189 3.811 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.061 3.939 16 C -0.114 4.114 17 H 0.084 0.916 18 C -0.154 4.154 19 C 0.049 3.951 20 O -0.388 6.388 21 C 0.062 3.938 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.003 0.997 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 -3.734 12.604 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.257 5.257 6 C 0.064 3.936 7 C -0.543 4.543 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.068 4.068 16 C -0.133 4.133 17 H 0.102 0.898 18 C -0.192 4.192 19 C -0.028 4.028 20 O -0.307 6.307 21 C -0.014 4.014 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.365 -3.701 12.544 13.149 hybrid contribution -0.819 -0.135 -1.014 1.310 sum -2.184 -3.835 11.530 12.346 Atomic orbital electron populations 1.21769 0.96626 1.00767 1.01594 1.21425 0.95192 0.97554 1.01400 1.22248 0.99004 0.96295 1.02118 1.22062 0.91510 0.91570 1.01256 1.62347 1.58978 1.01836 1.02570 1.19768 0.94792 0.93783 0.85213 1.21108 1.21645 1.21442 0.90073 0.91995 1.24970 0.95321 0.95281 0.98985 1.69946 1.32282 1.29671 1.22049 0.86599 0.79983 0.79340 0.81720 1.20310 1.21431 1.20199 1.22034 0.96723 0.97919 0.90095 1.22781 0.95677 1.00999 0.93856 0.89777 1.22978 0.98186 1.01758 0.96276 1.23073 0.85908 0.98038 0.95780 1.88831 1.40356 1.82785 1.18770 1.23588 0.95019 1.01650 0.81107 0.93311 0.92712 0.93398 0.92007 0.92843 0.93053 0.90641 0.90139 0.92959 0.97965 0.95916 0.92948 0.95048 0.91482 0.90953 0.90723 0.92848 0.90526 0.92108 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.16 -2.73 4.56 -26.73 -0.12 -2.85 16 4 C 0.06 1.20 4.97 -3.82 -0.02 1.18 16 5 N -0.53 -10.93 4.63 -236.07 -1.09 -12.02 16 6 C 0.19 4.76 4.54 -4.98 -0.02 4.73 16 7 C -0.50 -13.83 8.39 -34.44 -0.29 -14.12 16 8 H 0.06 1.69 7.39 -52.49 -0.39 1.31 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 11 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.06 1.04 4.08 -3.82 -0.02 1.03 16 16 C -0.11 -1.66 3.08 -88.49 -0.27 -1.93 16 17 H 0.08 1.25 6.28 -51.93 -0.33 0.92 16 18 C -0.15 -1.84 6.59 -25.21 -0.17 -2.00 16 19 C 0.05 0.59 7.70 37.73 0.29 0.88 16 20 O -0.39 -5.91 11.52 -35.23 -0.41 -6.31 16 21 C 0.06 0.95 7.13 38.34 0.27 1.22 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.84 6.34 -51.93 -0.33 0.51 16 28 H 0.08 1.56 6.28 -51.93 -0.33 1.23 16 29 H 0.08 1.66 6.98 -51.93 -0.36 1.30 16 30 H 0.05 0.87 6.28 -51.93 -0.33 0.54 16 31 H 0.00 0.07 6.02 -51.93 -0.31 -0.24 16 32 H 0.02 0.62 7.91 -51.93 -0.41 0.21 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.03 0.54 6.05 -51.93 -0.31 0.22 16 35 H 0.07 1.18 7.76 -51.93 -0.40 0.77 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.94 7.93 -51.93 -0.41 0.52 16 41 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -28.82 317.32 -8.49 -37.31 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.26 Total: -0.69 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -0.23 Total: -13.89 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.36 Total: -37.69 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.41 Total: -6.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.82 -8.49 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133233884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.093 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds