Wall clock time and date at job start Sun Mar 29 2020 22:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47114 * 2 1 4 4 C 1.52998 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47023 * 179.34910 * 4 3 2 6 6 C 1.46895 * 111.00052 * 297.27355 * 5 4 3 7 7 C 1.50702 * 109.46948 * 292.71132 * 6 5 4 8 8 H 1.07997 * 120.00216 * 355.03251 * 7 6 5 9 9 C 1.37884 * 120.00049 * 175.03430 * 7 6 5 10 10 N 1.31511 * 119.99765 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99936 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47375 * 59.99599 * 11 9 7 13 13 H 1.48500 * 109.47225 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47334 * 299.99733 * 11 9 7 15 15 C 1.46902 * 110.99651 * 61.22078 * 5 4 3 16 16 C 1.53001 * 109.46969 * 66.04872 * 15 5 4 17 17 H 1.09004 * 110.83150 * 308.64546 * 16 15 5 18 18 C 1.54812 * 110.91064 * 184.99646 * 16 15 5 19 19 C 1.54092 * 104.30617 * 220.98647 * 18 16 15 20 20 O 1.43742 * 107.29703 * 357.90324 * 19 18 16 21 21 C 1.44382 * 106.97313 * 26.51316 * 20 19 18 22 22 H 1.09004 * 109.46703 * 299.99746 * 1 2 3 23 23 H 1.08996 * 109.47271 * 59.99487 * 1 2 3 24 24 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46703 * 240.00254 * 2 1 3 26 26 H 1.09002 * 109.47068 * 120.00146 * 2 1 3 27 27 H 1.09004 * 109.46678 * 60.00227 * 3 2 1 28 28 H 1.08996 * 109.47470 * 300.00391 * 3 2 1 29 29 H 1.09000 * 109.46979 * 59.35468 * 4 3 2 30 30 H 1.08996 * 109.47179 * 299.34990 * 4 3 2 31 31 H 1.09001 * 109.47609 * 52.71361 * 6 5 4 32 32 H 1.09005 * 109.47121 * 172.71669 * 6 5 4 33 33 H 0.97003 * 119.99529 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.48024 * 306.04559 * 15 5 4 35 35 H 1.09005 * 109.47161 * 186.04438 * 15 5 4 36 36 H 1.09004 * 110.48774 * 102.24179 * 18 16 15 37 37 H 1.08999 * 110.48687 * 339.72911 * 18 16 15 38 38 H 1.09006 * 109.88194 * 117.32830 * 19 18 16 39 39 H 1.08997 * 109.87988 * 238.47591 * 19 18 16 40 40 H 1.08997 * 110.61860 * 78.44444 * 21 20 19 41 41 H 1.08994 * 110.61659 * 201.43959 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0598 2.8274 -0.0164 6 6 3.6422 3.5195 -1.2430 7 6 4.3418 2.9063 -2.4286 8 1 5.0873 2.1395 -2.2785 9 6 4.0302 3.3244 -3.7050 10 7 3.1227 4.2586 -3.8877 11 14 4.8968 2.5639 -5.1746 12 1 4.6351 1.1024 -5.2019 13 1 4.3865 3.1821 -6.4247 14 1 6.3585 2.8031 -5.0657 15 6 3.6132 3.5572 1.1778 16 6 4.2704 2.9528 2.4202 17 1 4.1272 1.8726 2.4479 18 6 3.7277 3.6152 3.7100 19 6 4.9728 3.7909 4.6007 20 8 6.0890 3.2284 3.8908 21 6 5.7790 3.3129 2.4832 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 3.9330 0.9187 -0.8850 30 1 3.9337 0.9386 0.8948 31 1 2.5638 3.4211 -1.3666 32 1 3.9050 4.5750 -1.1720 33 1 2.9032 4.5525 -4.7857 34 1 2.5296 3.4807 1.2664 35 1 3.8974 4.6059 1.0902 36 1 2.9998 2.9651 4.1955 37 1 3.2815 4.5834 3.4828 38 1 5.1483 4.8503 4.7878 39 1 4.8305 3.2645 5.5445 40 1 5.9462 4.3245 2.1134 41 1 6.3698 2.5935 1.9163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133233884.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:02 Heat of formation + Delta-G solvation = -81.466243 kcal Electronic energy + Delta-G solvation = -18223.761460 eV Core-core repulsion = 15523.121993 eV Total energy + Delta-G solvation = -2700.639467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55498 -38.87680 -35.37774 -34.81337 -33.24150 -30.44992 -29.87731 -28.39236 -25.94049 -25.04687 -23.46470 -22.40919 -21.82399 -20.46984 -18.36967 -17.65842 -16.77224 -16.62890 -16.34587 -16.31938 -15.74597 -15.37919 -14.93173 -14.59760 -14.21148 -13.95451 -13.72980 -13.44179 -13.04726 -13.01843 -12.60153 -12.52859 -12.42199 -12.31576 -12.14757 -12.04870 -11.95809 -11.80446 -11.62616 -11.46589 -11.21063 -11.03253 -10.59642 -10.55557 -8.84500 -8.17591 -6.26462 1.40688 1.43145 1.50828 2.40997 3.04132 3.15030 3.33589 3.74459 3.86537 4.03060 4.07928 4.08354 4.24622 4.34186 4.36453 4.50850 4.57658 4.65869 4.69209 4.85170 4.87341 4.87855 4.92300 4.94866 4.98277 5.01346 5.14038 5.16512 5.23733 5.27533 5.32400 5.39750 5.49544 5.55922 5.70323 5.97540 6.11075 6.39753 6.70186 6.90455 7.42762 8.92529 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.006944 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.356543 B = 4031.125300 C = 5072.274463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.067 3.933 5 N -0.542 5.542 6 C 0.206 3.794 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.065 3.935 16 C -0.107 4.107 17 H 0.087 0.913 18 C -0.146 4.146 19 C 0.043 3.957 20 O -0.405 6.405 21 C 0.064 3.936 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.081 0.919 31 H -0.020 1.020 32 H -0.006 1.006 33 H 0.263 0.737 34 H 0.035 0.965 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -5.044 14.075 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.186 4.186 4 C -0.061 4.061 5 N -0.264 5.264 6 C 0.080 3.920 7 C -0.555 4.555 8 H 0.078 0.922 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.195 1.195 15 C -0.063 4.063 16 C -0.126 4.126 17 H 0.105 0.895 18 C -0.184 4.184 19 C -0.033 4.033 20 O -0.324 6.324 21 C -0.013 4.013 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.099 0.901 31 H -0.003 1.003 32 H 0.012 0.988 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.071 0.929 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.424 -5.021 14.040 14.979 hybrid contribution -0.800 0.300 -1.396 1.637 sum -2.224 -4.721 12.644 13.679 Atomic orbital electron populations 1.21748 0.95353 1.02085 1.01336 1.21407 0.96324 0.95432 1.02058 1.22110 0.97901 0.98047 1.00572 1.22058 0.92448 0.90209 1.01369 1.62234 1.59462 1.02739 1.01989 1.19381 0.93080 0.92446 0.87095 1.21414 1.21596 1.21309 0.91220 0.92247 1.25830 0.95980 0.95673 1.01977 1.70073 1.33707 1.31024 1.22727 0.85544 0.78920 0.78782 0.78036 1.19329 1.20987 1.19511 1.22047 0.97157 0.97320 0.89807 1.22671 0.95129 1.01098 0.93673 0.89488 1.22964 0.98592 1.02230 0.94662 1.23304 0.84801 0.98976 0.96211 1.88814 1.41896 1.83208 1.18506 1.23482 0.95356 1.00919 0.81522 0.92266 0.94326 0.91289 0.92986 0.90489 0.91867 0.94790 0.92629 0.90112 1.00283 0.98815 0.92866 0.94675 0.92455 0.88889 0.90186 0.91837 0.88303 0.92898 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.11 -3.16 5.93 30.60 0.18 -2.98 16 3 C -0.15 -5.06 4.56 30.59 0.14 -4.92 16 4 C 0.07 2.48 4.97 86.30 0.43 2.91 16 5 N -0.54 -22.50 4.63 -900.79 -4.17 -26.67 16 6 C 0.21 10.80 4.54 85.56 0.39 11.18 16 7 C -0.52 -29.15 8.39 25.60 0.21 -28.94 16 8 H 0.06 3.31 7.39 -2.91 -0.02 3.29 16 9 C 0.00 0.18 5.46 84.66 0.46 0.64 16 10 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 11 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 C 0.06 2.20 4.08 86.30 0.35 2.56 16 16 C -0.11 -2.92 3.08 -9.41 -0.03 -2.95 16 17 H 0.09 2.35 6.28 -2.39 -0.01 2.34 16 18 C -0.15 -3.07 6.59 31.58 0.21 -2.87 16 19 C 0.04 0.92 7.70 72.35 0.56 1.48 16 20 O -0.40 -11.59 11.52 -148.98 -1.72 -13.31 16 21 C 0.06 1.88 7.13 72.75 0.52 2.40 16 22 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 2.00 6.34 -2.38 -0.02 1.98 16 28 H 0.03 1.45 6.28 -2.39 -0.02 1.43 16 29 H 0.06 2.32 6.98 -2.39 -0.02 2.30 16 30 H 0.08 2.53 6.28 -2.39 -0.02 2.51 16 31 H -0.02 -1.16 6.02 -2.39 -0.01 -1.17 16 32 H -0.01 -0.36 7.91 -2.38 -0.02 -0.38 16 33 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.04 1.17 6.05 -2.39 -0.01 1.16 16 35 H 0.06 2.04 7.76 -2.38 -0.02 2.03 16 36 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.08 1.61 7.86 -2.39 -0.02 1.60 16 38 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.63 7.93 -2.39 -0.02 1.61 16 41 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -63.15 317.32 1.53 -61.62 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.97 Total: 12.19 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.14 Total: -24.39 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -3.89 Total: -82.68 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -1.72 Total: -13.31 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.15 1.53 -61.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133233884.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.846 kcal (2) G-P(sol) polarization free energy of solvation -63.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds