Wall clock time and date at job start Sun Mar 29 2020 22:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46917 * 185.15955 * 4 3 2 6 6 C 1.46904 * 111.00013 * 174.85463 * 5 4 3 7 7 C 1.50700 * 109.47231 * 187.53197 * 6 5 4 8 8 H 1.08004 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00140 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00160 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99921 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47015 * 269.99970 * 11 9 7 13 13 H 1.48510 * 109.46850 * 29.99970 * 11 9 7 14 14 H 1.48502 * 109.46924 * 149.99519 * 11 9 7 15 15 C 1.46901 * 110.99950 * 298.80907 * 5 4 3 16 16 C 1.52999 * 109.47230 * 304.26414 * 15 5 4 17 17 H 1.09000 * 110.45452 * 49.03248 * 16 15 5 18 18 C 1.54505 * 110.51013 * 171.63677 * 16 15 5 19 19 C 1.54480 * 104.06509 * 118.64386 * 18 16 15 20 20 O 1.44433 * 104.79979 * 23.97860 * 19 18 16 21 21 C 1.44646 * 105.36759 * 319.56572 * 20 19 18 22 22 H 1.09001 * 109.47472 * 59.99978 * 1 2 3 23 23 H 1.09005 * 109.46888 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46915 * 299.99573 * 1 2 3 25 25 H 1.08998 * 109.47367 * 240.00700 * 2 1 3 26 26 H 1.08993 * 109.47666 * 120.00251 * 2 1 3 27 27 H 1.08998 * 109.46420 * 60.00120 * 3 2 1 28 28 H 1.08993 * 109.47047 * 300.00630 * 3 2 1 29 29 H 1.09004 * 109.47263 * 65.16307 * 4 3 2 30 30 H 1.08996 * 109.47582 * 305.15845 * 4 3 2 31 31 H 1.09007 * 109.46758 * 67.53767 * 6 5 4 32 32 H 1.08995 * 109.47041 * 307.53540 * 6 5 4 33 33 H 0.96997 * 120.00102 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.46866 * 64.26851 * 15 5 4 35 35 H 1.09002 * 109.47137 * 184.26120 * 15 5 4 36 36 H 1.09003 * 110.51374 * 237.28777 * 18 16 15 37 37 H 1.08997 * 110.51225 * 0.02562 * 18 16 15 38 38 H 1.09000 * 110.37143 * 142.80670 * 19 18 16 39 39 H 1.09000 * 110.37372 * 265.03700 * 19 18 16 40 40 H 1.09001 * 110.33902 * 281.59488 * 21 20 19 41 41 H 1.08997 * 110.50638 * 159.18952 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0595 2.8220 0.1252 6 6 5.5228 2.8519 0.2520 7 6 5.9716 4.2567 0.5619 8 1 5.2427 5.0482 0.6556 9 6 7.3126 4.5315 0.7266 10 7 7.7042 5.7574 0.9975 11 14 8.5733 3.1625 0.5651 12 1 8.7936 2.5334 1.8921 13 1 8.0748 2.1408 -0.3905 14 1 9.8535 3.7249 0.0652 15 6 3.6124 3.6436 -1.0075 16 6 4.0574 2.9912 -2.3179 17 1 3.7926 1.9339 -2.3262 18 6 3.4251 3.7172 -3.5262 19 6 4.6379 4.2520 -4.3197 20 8 5.7340 3.3900 -3.9434 21 6 5.5782 3.1699 -2.5223 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 1.0108 -0.9318 30 1 3.9330 0.8510 0.8410 31 1 5.9753 2.5240 -0.6839 32 1 5.8313 2.1858 1.0577 33 1 8.6476 5.9506 1.1138 34 1 2.5254 3.7230 -0.9919 35 1 4.0505 4.6387 -0.9299 36 1 2.8496 3.0184 -4.1334 37 1 2.7957 4.5412 -3.1901 38 1 4.4509 4.1822 -5.3913 39 1 4.8503 5.2835 -4.0386 40 1 5.9372 4.0341 -1.9634 41 1 6.1108 2.2700 -2.2147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133234097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:04 Heat of formation + Delta-G solvation = -48.997302 kcal Electronic energy + Delta-G solvation = -18676.682633 eV Core-core repulsion = 15977.451125 eV Total energy + Delta-G solvation = -2699.231508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51492 -37.16274 -34.58405 -32.61712 -31.67480 -29.46772 -28.57092 -27.05785 -25.01622 -22.81470 -22.11551 -20.87773 -20.57921 -19.07515 -16.96878 -16.44549 -15.38350 -15.16296 -14.97724 -14.63085 -14.32548 -13.87451 -13.56220 -13.31075 -12.87759 -12.52064 -12.29687 -12.19391 -11.66008 -11.59484 -11.21570 -11.13733 -11.02180 -10.90960 -10.72882 -10.70603 -10.39958 -10.36398 -10.12528 -9.83143 -9.79765 -9.29984 -9.21224 -8.56529 -7.30004 -6.07670 -4.04427 3.27600 3.35440 3.36766 4.38943 4.41996 4.66707 4.95514 5.05676 5.09626 5.20513 5.24215 5.28529 5.31123 5.49668 5.53856 5.72693 5.80153 5.85487 5.89720 5.91366 5.99526 6.00859 6.09096 6.14882 6.17151 6.20805 6.29220 6.37770 6.48997 6.55897 6.63038 6.76933 6.86653 6.99983 7.30277 7.58824 7.90789 8.04788 8.64089 9.00575 9.54204 11.05109 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.008735 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.085824 B = 3204.562268 C = 4219.889824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.115 4.115 4 C 0.047 3.953 5 N -0.524 5.524 6 C 0.141 3.859 7 C -0.507 4.507 8 H 0.080 0.920 9 C 0.071 3.929 10 N -0.898 5.898 11 Si 0.868 3.132 12 H -0.276 1.276 13 H -0.267 1.267 14 H -0.286 1.286 15 C 0.070 3.930 16 C -0.157 4.157 17 H 0.076 0.924 18 C -0.145 4.145 19 C 0.046 3.954 20 O -0.390 6.390 21 C 0.044 3.956 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.008 0.992 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 -8.039 -6.596 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.081 4.081 5 N -0.246 5.246 6 C 0.015 3.985 7 C -0.546 4.546 8 H 0.098 0.902 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.696 3.304 12 H -0.202 1.202 13 H -0.191 1.191 14 H -0.211 1.211 15 C -0.059 4.059 16 C -0.177 4.177 17 H 0.095 0.905 18 C -0.183 4.183 19 C -0.031 4.031 20 O -0.309 6.309 21 C -0.031 4.031 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.655 -7.808 -6.236 14.607 hybrid contribution 0.996 -1.001 -0.573 1.524 sum -9.658 -8.809 -6.808 14.739 Atomic orbital electron populations 1.21754 0.96161 1.01075 1.01734 1.21504 0.95530 0.97482 1.01676 1.21620 0.95520 0.95791 1.02382 1.22172 0.94667 0.91686 0.99622 1.62187 1.14082 1.08298 1.40023 1.20601 0.83230 0.98758 0.95891 1.20987 0.92795 0.92960 1.47813 0.90166 1.24869 0.98221 0.95148 0.94809 1.69880 1.16091 1.18928 1.48763 0.86970 0.81615 0.82992 0.78859 1.20220 1.19139 1.21143 1.22244 0.98936 0.98854 0.85820 1.23256 0.96514 1.00915 0.97032 0.90539 1.22910 0.98352 1.00313 0.96756 1.23305 0.86215 0.94567 0.99007 1.89092 1.48544 1.68419 1.24861 1.24151 0.94890 1.03252 0.80855 0.92965 0.93198 0.92740 0.92503 0.92142 0.91244 0.92283 0.95503 0.91646 0.97465 0.96143 0.92631 0.92053 0.89079 0.91589 0.90569 0.90121 0.92339 0.88728 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.11 16 2 C -0.12 -1.41 5.93 -26.73 -0.16 -1.57 16 3 C -0.12 -1.57 4.85 -26.73 -0.13 -1.70 16 4 C 0.05 0.77 4.56 -3.82 -0.02 0.76 16 5 N -0.52 -10.43 4.76 -236.07 -1.12 -11.56 16 6 C 0.14 3.27 3.25 -4.97 -0.02 3.25 16 7 C -0.51 -13.76 7.75 -34.44 -0.27 -14.03 16 8 H 0.08 2.38 7.23 -52.48 -0.38 2.00 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 10 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 11 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.07 1.26 4.18 -3.82 -0.02 1.25 16 16 C -0.16 -2.61 2.83 -89.06 -0.25 -2.87 16 17 H 0.08 1.25 5.81 -51.93 -0.30 0.94 16 18 C -0.14 -2.03 6.73 -25.16 -0.17 -2.20 16 19 C 0.05 0.70 7.64 37.93 0.29 0.99 16 20 O -0.39 -7.45 11.65 -35.23 -0.41 -7.86 16 21 C 0.04 0.86 5.19 37.93 0.20 1.06 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.79 6.81 -51.93 -0.35 0.44 16 29 H 0.03 0.44 5.94 -51.93 -0.31 0.13 16 30 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 31 H 0.01 0.18 2.88 -51.93 -0.15 0.03 16 32 H 0.02 0.49 7.47 -51.93 -0.39 0.10 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 0.99 6.68 -51.93 -0.35 0.64 16 35 H 0.09 1.89 6.23 -51.93 -0.32 1.56 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.98 7.73 -51.93 -0.40 0.57 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 2.14 6.03 -51.93 -0.31 1.82 16 41 H 0.09 1.74 6.58 -51.93 -0.34 1.40 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -29.21 305.95 -8.09 -37.29 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.00 Total: 1.32 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.27 Total: -14.24 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.35 Total: -37.73 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.41 Total: -7.86 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.21 -8.09 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133234097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.705 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds