Wall clock time and date at job start Sun Mar 29 2020 22:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47138 * 2 1 4 4 C 1.52998 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46917 * 185.15955 * 4 3 2 6 6 C 1.46904 * 111.00013 * 174.85463 * 5 4 3 7 7 C 1.50700 * 109.47231 * 187.53197 * 6 5 4 8 8 H 1.08004 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00140 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00160 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99921 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47015 * 269.99970 * 11 9 7 13 13 H 1.48510 * 109.46850 * 29.99970 * 11 9 7 14 14 H 1.48502 * 109.46924 * 149.99519 * 11 9 7 15 15 C 1.46901 * 110.99950 * 298.80907 * 5 4 3 16 16 C 1.52999 * 109.47230 * 304.26414 * 15 5 4 17 17 H 1.09000 * 110.45452 * 49.03248 * 16 15 5 18 18 C 1.54505 * 110.51013 * 171.63677 * 16 15 5 19 19 C 1.54480 * 104.06509 * 118.64386 * 18 16 15 20 20 O 1.44433 * 104.79979 * 23.97860 * 19 18 16 21 21 C 1.44646 * 105.36759 * 319.56572 * 20 19 18 22 22 H 1.09001 * 109.47472 * 59.99978 * 1 2 3 23 23 H 1.09005 * 109.46888 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46915 * 299.99573 * 1 2 3 25 25 H 1.08998 * 109.47367 * 240.00700 * 2 1 3 26 26 H 1.08993 * 109.47666 * 120.00251 * 2 1 3 27 27 H 1.08998 * 109.46420 * 60.00120 * 3 2 1 28 28 H 1.08993 * 109.47047 * 300.00630 * 3 2 1 29 29 H 1.09004 * 109.47263 * 65.16307 * 4 3 2 30 30 H 1.08996 * 109.47582 * 305.15845 * 4 3 2 31 31 H 1.09007 * 109.46758 * 67.53767 * 6 5 4 32 32 H 1.08995 * 109.47041 * 307.53540 * 6 5 4 33 33 H 0.96997 * 120.00102 * 179.97438 * 10 9 7 34 34 H 1.09001 * 109.46866 * 64.26851 * 15 5 4 35 35 H 1.09002 * 109.47137 * 184.26120 * 15 5 4 36 36 H 1.09003 * 110.51374 * 237.28777 * 18 16 15 37 37 H 1.08997 * 110.51225 * 0.02562 * 18 16 15 38 38 H 1.09000 * 110.37143 * 142.80670 * 19 18 16 39 39 H 1.09000 * 110.37372 * 265.03700 * 19 18 16 40 40 H 1.09001 * 110.33902 * 281.59488 * 21 20 19 41 41 H 1.08997 * 110.50638 * 159.18952 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0595 2.8220 0.1252 6 6 5.5228 2.8519 0.2520 7 6 5.9716 4.2567 0.5619 8 1 5.2427 5.0482 0.6556 9 6 7.3126 4.5315 0.7266 10 7 7.7042 5.7574 0.9975 11 14 8.5733 3.1625 0.5651 12 1 8.7936 2.5334 1.8921 13 1 8.0748 2.1408 -0.3905 14 1 9.8535 3.7249 0.0652 15 6 3.6124 3.6436 -1.0075 16 6 4.0574 2.9912 -2.3179 17 1 3.7926 1.9339 -2.3262 18 6 3.4251 3.7172 -3.5262 19 6 4.6379 4.2520 -4.3197 20 8 5.7340 3.3900 -3.9434 21 6 5.5782 3.1699 -2.5223 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.9337 1.0108 -0.9318 30 1 3.9330 0.8510 0.8410 31 1 5.9753 2.5240 -0.6839 32 1 5.8313 2.1858 1.0577 33 1 8.6476 5.9506 1.1138 34 1 2.5254 3.7230 -0.9919 35 1 4.0505 4.6387 -0.9299 36 1 2.8496 3.0184 -4.1334 37 1 2.7957 4.5412 -3.1901 38 1 4.4509 4.1822 -5.3913 39 1 4.8503 5.2835 -4.0386 40 1 5.9372 4.0341 -1.9634 41 1 6.1108 2.2700 -2.2147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133234097.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:04 Heat of formation + Delta-G solvation = -68.675707 kcal Electronic energy + Delta-G solvation = -18677.535952 eV Core-core repulsion = 15977.451125 eV Total energy + Delta-G solvation = -2700.084828 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94543 -38.58663 -35.76148 -34.59156 -33.11015 -30.89240 -30.02552 -28.54046 -26.58966 -24.18650 -23.47389 -22.19388 -21.91522 -20.50008 -18.97773 -17.89750 -16.69305 -16.63723 -16.35799 -16.26673 -15.92580 -15.30802 -14.73609 -14.61241 -14.50292 -13.89026 -13.66649 -13.52427 -13.16455 -12.91012 -12.87580 -12.57313 -12.44867 -12.17266 -12.04273 -11.94933 -11.92222 -11.59651 -11.54043 -11.48020 -11.26829 -11.12879 -10.79007 -10.66906 -8.87205 -8.27155 -6.27082 1.31392 1.33521 1.41504 2.32617 3.02832 3.09043 3.26402 3.69337 3.78468 4.01624 4.05815 4.16769 4.21792 4.34800 4.40094 4.49809 4.59861 4.64100 4.67732 4.79469 4.81076 4.86273 4.92123 5.00075 5.00459 5.03125 5.07095 5.11966 5.15975 5.19617 5.28510 5.42354 5.46274 5.55454 5.58841 5.88203 6.03899 6.42682 6.71035 6.78394 7.35013 8.89177 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017583 B = 0.008735 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.085824 B = 3204.562268 C = 4219.889824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.107 4.107 4 C 0.047 3.953 5 N -0.542 5.542 6 C 0.150 3.850 7 C -0.499 4.499 8 H 0.040 0.960 9 C 0.015 3.985 10 N -0.946 5.946 11 Si 0.929 3.071 12 H -0.267 1.267 13 H -0.250 1.250 14 H -0.286 1.286 15 C 0.076 3.924 16 C -0.148 4.148 17 H 0.090 0.910 18 C -0.136 4.136 19 C 0.036 3.964 20 O -0.408 6.408 21 C 0.046 3.954 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.265 0.735 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 -10.310 -7.975 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.144 4.144 4 C -0.080 4.080 5 N -0.264 5.264 6 C 0.024 3.976 7 C -0.538 4.538 8 H 0.058 0.942 9 C -0.183 4.183 10 N -0.587 5.587 11 Si 0.753 3.247 12 H -0.193 1.193 13 H -0.174 1.174 14 H -0.211 1.211 15 C -0.052 4.052 16 C -0.168 4.168 17 H 0.108 0.892 18 C -0.174 4.174 19 C -0.040 4.040 20 O -0.328 6.328 21 C -0.030 4.030 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.131 0.869 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.265 -10.094 -7.623 17.619 hybrid contribution 1.411 -0.215 -0.162 1.437 sum -10.854 -10.310 -7.785 16.873 Atomic orbital electron populations 1.21734 0.94841 1.02019 1.01921 1.21471 0.96627 0.95677 1.02032 1.21552 0.93101 0.97545 1.02240 1.22264 0.96648 0.89333 0.99793 1.62091 1.11866 1.10854 1.41577 1.20362 0.85771 0.95738 0.95772 1.21160 0.92063 0.94139 1.46411 0.94151 1.25666 1.00438 0.97345 0.94815 1.70026 1.16538 1.21221 1.50948 0.85992 0.78840 0.80377 0.79492 1.19265 1.17393 1.21138 1.22150 1.00000 0.96859 0.86183 1.23160 0.94458 1.01848 0.97346 0.89181 1.22914 0.97973 1.01033 0.95481 1.23591 0.85611 0.93656 1.01125 1.89066 1.50454 1.69220 1.24032 1.23898 0.96942 1.00927 0.81184 0.92481 0.91922 0.92896 0.91826 0.92174 0.92216 0.91568 0.94821 0.91965 0.96787 0.96586 0.92645 0.89461 0.92736 0.88733 0.89272 0.86931 0.93163 0.92654 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.72 16 2 C -0.12 -2.36 5.93 30.60 0.18 -2.18 16 3 C -0.11 -2.62 4.85 30.60 0.15 -2.48 16 4 C 0.05 1.47 4.56 86.30 0.39 1.86 16 5 N -0.54 -21.34 4.76 -900.78 -4.29 -25.62 16 6 C 0.15 7.00 3.25 85.56 0.28 7.28 16 7 C -0.50 -28.10 7.75 25.60 0.20 -27.90 16 8 H 0.04 2.54 7.23 -2.91 -0.02 2.52 16 9 C 0.01 0.85 5.47 84.65 0.46 1.32 16 10 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 11 Si 0.93 44.42 27.47 68.60 1.88 46.30 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.25 -11.18 6.54 99.48 0.65 -10.52 16 14 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 15 C 0.08 2.71 4.18 86.30 0.36 3.07 16 16 C -0.15 -4.66 2.83 -9.78 -0.03 -4.69 16 17 H 0.09 2.64 5.81 -2.39 -0.01 2.63 16 18 C -0.14 -3.38 6.73 31.61 0.21 -3.17 16 19 C 0.04 1.03 7.64 72.49 0.55 1.58 16 20 O -0.41 -15.17 11.65 -148.98 -1.74 -16.90 16 21 C 0.05 1.81 5.19 72.48 0.38 2.19 16 22 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.54 6.81 -2.39 -0.02 1.52 16 29 H 0.03 1.01 5.94 -2.39 -0.01 1.00 16 30 H 0.06 1.96 8.06 -2.39 -0.02 1.94 16 31 H 0.01 0.67 2.88 -2.38 -0.01 0.67 16 32 H 0.02 0.76 7.47 -2.39 -0.02 0.74 16 33 H 0.26 15.55 8.31 -92.71 -0.77 14.77 16 34 H 0.09 2.63 6.68 -2.39 -0.02 2.61 16 35 H 0.05 2.34 6.23 -2.39 -0.01 2.32 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 2.01 7.73 -2.39 -0.02 1.99 16 38 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 2.59 6.03 -2.39 -0.01 2.58 16 41 H 0.08 3.05 6.58 -2.39 -0.02 3.03 16 Total: -1.00 -65.18 305.95 0.94 -64.23 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.93 Total: 15.57 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 3.85 Total: -24.84 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.99 Total: -84.36 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.74 Total: -16.90 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -65.18 0.94 -64.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133234097.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.443 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds