Wall clock time and date at job start Sun Mar 29 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46850 * 2 1 4 4 H 1.09001 * 109.47474 * 54.25658 * 3 2 1 5 5 C 1.50699 * 109.47383 * 174.26314 * 3 2 1 6 6 H 1.08001 * 120.00326 * 119.99413 * 5 3 2 7 7 C 1.37883 * 119.99855 * 300.00198 * 5 3 2 8 8 N 1.31512 * 119.99612 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00095 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47111 * 59.99535 * 9 7 5 11 11 H 1.48496 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47000 * 299.99535 * 9 7 5 13 13 N 1.46908 * 109.46983 * 294.25988 * 3 2 1 14 14 C 1.46905 * 110.99856 * 156.50685 * 13 3 2 15 15 C 1.53003 * 109.46681 * 173.77080 * 14 13 3 16 16 C 1.52999 * 109.54603 * 299.99959 * 15 14 13 17 17 C 1.53172 * 109.54249 * 60.18142 * 15 14 13 18 18 C 1.53280 * 109.06233 * 176.84867 * 17 15 14 19 19 O 1.42903 * 109.46389 * 302.44210 * 18 17 15 20 20 C 1.42903 * 114.09199 * 61.15541 * 19 18 17 21 21 C 1.53086 * 109.41911 * 298.84140 * 20 19 18 22 22 H 1.08995 * 109.47630 * 57.31100 * 1 2 3 23 23 H 1.09000 * 109.46867 * 177.31081 * 1 2 3 24 24 H 1.08998 * 109.47493 * 297.30797 * 1 2 3 25 25 H 1.08998 * 109.47535 * 239.99893 * 2 1 3 26 26 H 1.09001 * 109.47076 * 119.99106 * 2 1 3 27 27 H 0.97006 * 119.99792 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99321 * 32.55688 * 13 3 2 29 29 H 1.08997 * 109.46981 * 53.77432 * 14 13 3 30 30 H 1.08997 * 109.47247 * 293.77169 * 14 13 3 31 31 H 1.09003 * 109.46857 * 60.00166 * 16 15 14 32 32 H 1.08991 * 109.47446 * 180.02562 * 16 15 14 33 33 H 1.09004 * 109.46904 * 300.00525 * 16 15 14 34 34 H 1.09004 * 109.52363 * 296.83609 * 17 15 14 35 35 H 1.09002 * 109.52669 * 57.02374 * 17 15 14 36 36 H 1.09007 * 109.46029 * 182.44763 * 18 17 15 37 37 H 1.08999 * 109.46847 * 62.45098 * 18 17 15 38 38 H 1.09008 * 109.47616 * 178.85924 * 20 19 18 39 39 H 1.09003 * 109.48853 * 58.83515 * 20 19 18 40 40 H 1.08999 * 109.52922 * 297.70804 * 21 20 19 41 41 H 1.08997 * 109.57658 * 177.54491 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5950 1.9852 0.8341 5 6 3.5402 1.4450 0.1420 6 1 4.1549 1.8863 -0.6286 7 6 4.1282 0.8839 1.2558 8 7 3.3796 0.3469 2.1944 9 14 5.9878 0.8863 1.4316 10 1 6.4833 2.2863 1.4312 11 1 6.3652 0.2285 2.7083 12 1 6.5934 0.1466 0.2952 13 7 1.6665 2.0939 -1.2628 14 6 1.6205 3.5541 -1.1084 15 6 1.3824 4.2038 -2.4730 16 6 2.5203 3.8281 -3.4243 17 6 0.0503 3.7135 -3.0485 18 6 -0.2150 4.4301 -4.3773 19 8 -0.2207 5.8430 -4.1635 20 6 1.0152 6.3632 -3.6694 21 6 1.3296 5.7264 -2.3133 22 1 -0.3634 0.5550 -0.8648 23 1 -0.3633 -1.0266 -0.0482 24 1 -0.3634 0.4714 0.9131 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.7932 -0.0475 2.9782 28 1 0.7869 1.7386 -1.6065 29 1 2.5671 3.9061 -0.6985 30 1 0.8093 3.8225 -0.4317 31 1 2.5547 2.7447 -3.5395 32 1 2.3498 4.2919 -4.3958 33 1 3.4672 4.1803 -3.0151 34 1 0.0998 2.6376 -3.2160 35 1 -0.7539 3.9373 -2.3475 36 1 -1.1823 4.1182 -4.7713 37 1 0.5679 4.1735 -5.0910 38 1 0.9341 7.4441 -3.5534 39 1 1.8145 6.1321 -4.3736 40 1 0.5513 5.9907 -1.5974 41 1 2.2929 6.0885 -1.9543 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135040333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:55 Heat of formation + Delta-G solvation = -67.141266 kcal Electronic energy + Delta-G solvation = -18597.362661 eV Core-core repulsion = 15897.344371 eV Total energy + Delta-G solvation = -2700.018289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.77606 -36.64764 -34.74343 -32.02997 -31.03894 -30.59391 -27.53578 -26.80539 -25.17412 -23.48196 -22.84386 -21.58941 -19.49042 -18.26967 -16.28741 -16.00973 -15.89369 -14.95368 -14.90196 -14.48207 -14.30926 -13.64262 -13.49191 -13.38674 -12.65786 -12.29926 -12.02616 -11.91756 -11.64848 -11.34352 -11.17183 -11.07668 -10.94140 -10.86965 -10.73744 -10.62900 -10.12734 -9.96125 -9.93428 -9.71383 -9.61473 -9.09955 -9.03988 -8.32832 -7.16669 -5.95240 -3.99192 3.33981 3.38344 3.41505 3.96102 4.45405 4.83753 4.95061 5.05340 5.13916 5.30071 5.33652 5.42676 5.52212 5.64160 5.70018 5.86865 5.87618 5.99724 6.10989 6.15927 6.16872 6.21157 6.25133 6.35763 6.42263 6.44987 6.56866 6.75120 6.84249 6.88576 7.10180 7.21467 7.27119 7.53084 7.80392 7.93392 8.34113 8.41765 8.79862 9.08661 9.65564 11.10168 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.006409 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.723932 B = 4367.567955 C = 5019.629858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.219 3.781 4 H -0.001 1.001 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.081 3.919 15 C -0.059 4.059 16 C -0.132 4.132 17 C -0.144 4.144 18 C 0.061 3.939 19 O -0.388 6.388 20 C 0.062 3.938 21 C -0.146 4.146 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.259 0.741 28 H 0.314 0.686 29 H 0.074 0.926 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 7.297 -9.776 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.315 5.315 14 C -0.049 4.049 15 C -0.059 4.059 16 C -0.189 4.189 17 C -0.182 4.182 18 C -0.016 4.016 19 O -0.307 6.307 20 C -0.015 4.015 21 C -0.184 4.184 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.132 0.868 29 H 0.092 0.908 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.084 7.304 -9.864 13.285 hybrid contribution 0.425 -0.140 0.906 1.011 sum -4.659 7.164 -8.957 12.380 Atomic orbital electron populations 1.21878 0.99688 0.99441 0.99687 1.21748 0.91151 1.00414 1.02980 1.19115 0.95385 0.89971 0.84392 0.98365 1.21164 0.91300 1.36450 1.04094 0.92165 1.24961 0.97993 0.95724 0.95911 1.69865 1.34704 1.39598 1.09544 0.86623 0.85906 0.78085 0.77116 1.20503 1.21483 1.20340 1.60697 1.34809 1.02638 1.33311 1.21801 1.00181 0.90048 0.92910 1.20609 0.94875 0.93446 0.96985 1.21800 0.97268 1.03008 0.96829 1.22258 0.97621 1.00993 0.97356 1.22638 1.01584 0.80878 0.96499 1.87873 1.35044 1.22139 1.85672 1.22576 0.86490 0.97948 0.94482 1.22226 1.02386 0.95980 0.97812 0.94672 0.94460 0.93929 0.94117 0.88322 0.93074 0.86773 0.90778 0.97051 0.90783 0.94246 0.92918 0.90288 0.91772 0.89512 0.93002 0.89507 0.93053 0.91458 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.79 37.16 0.36 -2.53 16 2 C -0.12 -2.92 5.37 -26.73 -0.14 -3.06 16 3 C 0.22 5.39 2.02 -68.86 -0.14 5.25 16 4 H 0.00 -0.03 7.88 -51.93 -0.41 -0.44 16 5 C -0.49 -13.43 8.45 -34.44 -0.29 -13.72 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.55 11.29 55.43 0.63 -24.92 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -13.99 5.42 -107.94 -0.58 -14.57 16 14 C 0.08 1.50 4.43 -3.82 -0.02 1.48 16 15 C -0.06 -0.87 0.59 -154.32 -0.09 -0.96 16 16 C -0.13 -1.95 7.77 37.16 0.29 -1.66 16 17 C -0.14 -1.96 4.52 -26.50 -0.12 -2.08 16 18 C 0.06 0.74 6.57 37.30 0.25 0.98 16 19 O -0.39 -5.26 10.77 -35.23 -0.38 -5.64 16 20 C 0.06 0.74 6.57 37.20 0.24 0.98 16 21 C -0.15 -1.92 4.92 -26.59 -0.13 -2.05 16 22 H 0.03 0.61 6.38 -51.93 -0.33 0.28 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.61 5.94 -51.93 -0.31 2.31 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 28 H 0.31 5.92 4.90 -39.29 -0.19 5.72 16 29 H 0.07 1.54 7.84 -51.93 -0.41 1.13 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 1.21 7.61 -51.93 -0.40 0.82 16 32 H 0.04 0.50 5.01 -51.93 -0.26 0.24 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.08 6.91 -51.93 -0.36 0.72 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.60 6.60 -51.93 -0.34 0.26 16 38 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 39 H 0.05 0.58 6.60 -51.93 -0.34 0.24 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -28.19 307.83 -7.73 -35.91 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.12 Total: 4.07 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 0.11 Total: -15.97 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.04 Total: -39.50 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.38 Total: -5.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.19 -7.73 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.230 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds