Wall clock time and date at job start Sun Mar 29 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46850 * 2 1 4 4 H 1.09001 * 109.47474 * 54.25658 * 3 2 1 5 5 C 1.50699 * 109.47383 * 174.26314 * 3 2 1 6 6 H 1.08001 * 120.00326 * 119.99413 * 5 3 2 7 7 C 1.37883 * 119.99855 * 300.00198 * 5 3 2 8 8 N 1.31512 * 119.99612 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00095 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47111 * 59.99535 * 9 7 5 11 11 H 1.48496 * 109.47202 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47000 * 299.99535 * 9 7 5 13 13 N 1.46908 * 109.46983 * 294.25988 * 3 2 1 14 14 C 1.46905 * 110.99856 * 156.50685 * 13 3 2 15 15 C 1.53003 * 109.46681 * 173.77080 * 14 13 3 16 16 C 1.52999 * 109.54603 * 299.99959 * 15 14 13 17 17 C 1.53172 * 109.54249 * 60.18142 * 15 14 13 18 18 C 1.53280 * 109.06233 * 176.84867 * 17 15 14 19 19 O 1.42903 * 109.46389 * 302.44210 * 18 17 15 20 20 C 1.42903 * 114.09199 * 61.15541 * 19 18 17 21 21 C 1.53086 * 109.41911 * 298.84140 * 20 19 18 22 22 H 1.08995 * 109.47630 * 57.31100 * 1 2 3 23 23 H 1.09000 * 109.46867 * 177.31081 * 1 2 3 24 24 H 1.08998 * 109.47493 * 297.30797 * 1 2 3 25 25 H 1.08998 * 109.47535 * 239.99893 * 2 1 3 26 26 H 1.09001 * 109.47076 * 119.99106 * 2 1 3 27 27 H 0.97006 * 119.99792 * 180.02562 * 8 7 5 28 28 H 1.00898 * 110.99321 * 32.55688 * 13 3 2 29 29 H 1.08997 * 109.46981 * 53.77432 * 14 13 3 30 30 H 1.08997 * 109.47247 * 293.77169 * 14 13 3 31 31 H 1.09003 * 109.46857 * 60.00166 * 16 15 14 32 32 H 1.08991 * 109.47446 * 180.02562 * 16 15 14 33 33 H 1.09004 * 109.46904 * 300.00525 * 16 15 14 34 34 H 1.09004 * 109.52363 * 296.83609 * 17 15 14 35 35 H 1.09002 * 109.52669 * 57.02374 * 17 15 14 36 36 H 1.09007 * 109.46029 * 182.44763 * 18 17 15 37 37 H 1.08999 * 109.46847 * 62.45098 * 18 17 15 38 38 H 1.09008 * 109.47616 * 178.85924 * 20 19 18 39 39 H 1.09003 * 109.48853 * 58.83515 * 20 19 18 40 40 H 1.08999 * 109.52922 * 297.70804 * 21 20 19 41 41 H 1.08997 * 109.57658 * 177.54491 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5950 1.9852 0.8341 5 6 3.5402 1.4450 0.1420 6 1 4.1549 1.8863 -0.6286 7 6 4.1282 0.8839 1.2558 8 7 3.3796 0.3469 2.1944 9 14 5.9878 0.8863 1.4316 10 1 6.4833 2.2863 1.4312 11 1 6.3652 0.2285 2.7083 12 1 6.5934 0.1466 0.2952 13 7 1.6665 2.0939 -1.2628 14 6 1.6205 3.5541 -1.1084 15 6 1.3824 4.2038 -2.4730 16 6 2.5203 3.8281 -3.4243 17 6 0.0503 3.7135 -3.0485 18 6 -0.2150 4.4301 -4.3773 19 8 -0.2207 5.8430 -4.1635 20 6 1.0152 6.3632 -3.6694 21 6 1.3296 5.7264 -2.3133 22 1 -0.3634 0.5550 -0.8648 23 1 -0.3633 -1.0266 -0.0482 24 1 -0.3634 0.4714 0.9131 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.7932 -0.0475 2.9782 28 1 0.7869 1.7386 -1.6065 29 1 2.5671 3.9061 -0.6985 30 1 0.8093 3.8225 -0.4317 31 1 2.5547 2.7447 -3.5395 32 1 2.3498 4.2919 -4.3958 33 1 3.4672 4.1803 -3.0151 34 1 0.0998 2.6376 -3.2160 35 1 -0.7539 3.9373 -2.3475 36 1 -1.1823 4.1182 -4.7713 37 1 0.5679 4.1735 -5.0910 38 1 0.9341 7.4441 -3.5534 39 1 1.8145 6.1321 -4.3736 40 1 0.5513 5.9907 -1.5974 41 1 2.2929 6.0885 -1.9543 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135040333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:55 Heat of formation + Delta-G solvation = -84.501314 kcal Electronic energy + Delta-G solvation = -18598.115449 eV Core-core repulsion = 15897.344371 eV Total energy + Delta-G solvation = -2700.771078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89329 -38.24258 -36.20133 -34.01448 -32.33418 -31.94274 -28.90915 -28.45605 -26.71556 -24.74974 -24.36369 -22.94233 -21.40222 -19.42741 -18.37130 -17.16418 -16.90563 -16.72123 -16.33122 -15.89361 -15.67402 -15.14942 -14.86274 -14.75979 -14.38392 -13.84257 -13.45490 -13.24377 -13.08914 -12.80883 -12.78219 -12.72835 -12.54394 -12.23833 -12.13779 -12.02197 -11.96373 -11.55686 -11.45170 -11.19552 -11.06027 -10.92924 -10.43107 -10.24840 -8.95848 -8.06679 -6.18509 1.40732 1.41915 1.49685 2.43270 3.03099 3.18265 3.55909 3.79479 3.88810 4.02851 4.19645 4.35067 4.37074 4.48067 4.49772 4.56102 4.67882 4.72949 4.77705 4.79793 4.87979 4.91591 4.94854 5.03696 5.09643 5.16391 5.19558 5.25629 5.28609 5.36786 5.46086 5.60293 5.66427 5.75332 5.90601 6.31960 6.37040 6.51365 6.95392 7.03371 7.50409 8.96478 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028573 B = 0.006409 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.723932 B = 4367.567955 C = 5019.629858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.224 3.776 4 H -0.039 1.039 5 C -0.509 4.509 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.085 3.915 15 C -0.054 4.054 16 C -0.126 4.126 17 C -0.141 4.141 18 C 0.062 3.938 19 O -0.401 6.401 20 C 0.063 3.937 21 C -0.144 4.144 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.260 0.740 28 H 0.326 0.674 29 H 0.045 0.955 30 H 0.004 0.996 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 7.872 -11.450 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.116 3.884 4 H -0.021 1.021 5 C -0.547 4.547 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.308 5.308 14 C -0.045 4.045 15 C -0.054 4.054 16 C -0.183 4.183 17 C -0.179 4.179 18 C -0.014 4.014 19 O -0.320 6.320 20 C -0.013 4.013 21 C -0.182 4.182 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.403 7.887 -11.555 14.997 hybrid contribution 0.510 -0.301 1.442 1.558 sum -4.893 7.585 -10.113 13.556 Atomic orbital electron populations 1.21748 0.96380 1.01247 1.00246 1.21572 0.94135 0.98961 1.01190 1.18900 0.94016 0.90689 0.84805 1.02101 1.21430 0.92804 1.36460 1.04052 0.93164 1.25688 1.02213 0.95425 0.95651 1.70001 1.36267 1.40048 1.09844 0.85669 0.80879 0.78176 0.77222 1.20077 1.20977 1.19770 1.60590 1.35614 1.03678 1.30957 1.21781 0.98379 0.89001 0.95356 1.20544 0.95921 0.94437 0.94529 1.21734 0.96632 1.01967 0.97970 1.22223 0.96315 1.01131 0.98248 1.22713 1.03046 0.80178 0.95462 1.87871 1.35794 1.22696 1.85637 1.22668 0.86363 0.98900 0.93386 1.22211 1.02407 0.94629 0.98976 0.92533 0.92190 0.94735 0.94351 0.91524 0.93123 0.85427 0.93592 0.97800 0.92500 0.91695 0.94031 0.90380 0.92324 0.87654 0.92069 0.87574 0.92049 0.92019 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.79 71.98 0.70 -4.53 16 2 C -0.12 -5.69 5.37 30.59 0.16 -5.52 16 3 C 0.22 11.34 2.02 44.17 0.09 11.43 16 4 H -0.04 -2.20 7.88 -2.39 -0.02 -2.22 16 5 C -0.51 -28.49 8.45 25.60 0.22 -28.28 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.46 5.29 84.66 0.45 0.90 16 8 N -0.92 -53.63 11.29 21.45 0.24 -53.38 16 9 Si 0.95 44.53 29.54 68.60 2.03 46.55 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.68 -27.93 5.42 -495.42 -2.68 -30.62 16 14 C 0.08 3.20 4.43 86.30 0.38 3.58 16 15 C -0.05 -1.54 0.59 -52.06 -0.03 -1.57 16 16 C -0.13 -3.55 7.77 71.98 0.56 -2.99 16 17 C -0.14 -3.57 4.52 30.75 0.14 -3.43 16 18 C 0.06 1.33 6.57 72.08 0.47 1.81 16 19 O -0.40 -9.68 10.77 -148.98 -1.60 -11.28 16 20 C 0.06 1.33 6.57 72.01 0.47 1.81 16 21 C -0.14 -3.60 4.92 30.68 0.15 -3.45 16 22 H 0.06 1.87 6.38 -2.39 -0.02 1.85 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 27 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 28 H 0.33 12.06 4.90 -89.70 -0.44 11.62 16 29 H 0.05 1.97 7.84 -2.39 -0.02 1.96 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.06 1.80 7.61 -2.39 -0.02 1.78 16 32 H 0.06 1.49 5.01 -2.39 -0.01 1.48 16 33 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.98 6.91 -2.38 -0.02 1.96 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.06 1.21 6.60 -2.39 -0.02 1.19 16 38 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.06 1.19 6.60 -2.39 -0.02 1.17 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -61.18 307.83 2.30 -58.88 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.55 Total: 20.10 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.77 Total: -30.25 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.44 Total: -84.00 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.60 Total: -11.28 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.18 2.30 -58.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.617 kcal (2) G-P(sol) polarization free energy of solvation -61.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds