Wall clock time and date at job start Sun Mar 29 2020 23:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47204 * 2 1 4 4 H 1.09003 * 109.47351 * 174.49631 * 3 2 1 5 5 C 1.50699 * 109.47285 * 54.49721 * 3 2 1 6 6 H 1.08003 * 119.99732 * 240.00551 * 5 3 2 7 7 C 1.37880 * 120.00310 * 59.99463 * 5 3 2 8 8 N 1.31515 * 119.99791 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00199 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47344 * 90.00282 * 9 7 5 11 11 H 1.48504 * 109.47168 * 210.00608 * 9 7 5 12 12 H 1.48502 * 109.47260 * 330.00433 * 9 7 5 13 13 N 1.46904 * 109.47281 * 294.49399 * 3 2 1 14 14 C 1.46898 * 111.00051 * 272.77902 * 13 3 2 15 15 C 1.52996 * 109.46940 * 185.84036 * 14 13 3 16 16 C 1.53000 * 109.54465 * 300.17739 * 15 14 13 17 17 C 1.53182 * 109.61980 * 60.38624 * 15 14 13 18 18 C 1.53093 * 109.16493 * 176.87862 * 17 15 14 19 19 O 1.42902 * 109.42313 * 302.41113 * 18 17 15 20 20 C 1.42903 * 114.10120 * 61.15085 * 19 18 17 21 21 C 1.53096 * 109.41405 * 298.84171 * 20 19 18 22 22 H 1.09004 * 109.47159 * 301.89641 * 1 2 3 23 23 H 1.09002 * 109.47436 * 61.89755 * 1 2 3 24 24 H 1.08998 * 109.47217 * 181.90292 * 1 2 3 25 25 H 1.08998 * 109.47232 * 240.00145 * 2 1 3 26 26 H 1.09006 * 109.46934 * 120.00167 * 2 1 3 27 27 H 0.96995 * 119.99975 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99780 * 36.73341 * 13 3 2 29 29 H 1.09001 * 109.47227 * 65.83986 * 14 13 3 30 30 H 1.09002 * 109.46894 * 305.83689 * 14 13 3 31 31 H 1.09003 * 109.47058 * 299.82295 * 16 15 14 32 32 H 1.08998 * 109.47215 * 59.81916 * 16 15 14 33 33 H 1.09002 * 109.47118 * 179.82871 * 16 15 14 34 34 H 1.09003 * 109.51192 * 56.98249 * 17 15 14 35 35 H 1.08992 * 109.53278 * 296.79362 * 17 15 14 36 36 H 1.08998 * 109.47845 * 182.42305 * 18 17 15 37 37 H 1.09000 * 109.47751 * 62.39955 * 18 17 15 38 38 H 1.09005 * 109.48013 * 58.81943 * 20 19 18 39 39 H 1.08996 * 109.48426 * 178.84798 * 20 19 18 40 40 H 1.09005 * 109.52048 * 177.51017 * 21 20 19 41 41 H 1.08991 * 109.52401 * 297.63815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1255 1.4440 0.0986 5 6 1.4295 2.1911 1.1566 6 1 0.8213 3.0647 0.9737 7 6 1.6472 1.7608 2.4484 8 7 2.3880 0.6973 2.6711 9 14 0.8899 2.6885 3.8820 10 1 -0.4501 2.1243 4.1842 11 1 1.7639 2.5548 5.0752 12 1 0.7539 4.1239 3.5264 13 7 1.6618 2.0956 -1.2604 14 6 2.6720 1.8581 -2.3001 15 6 2.3195 2.6694 -3.5484 16 6 0.9433 2.2438 -4.0638 17 6 2.2978 4.1616 -3.2028 18 6 2.0213 4.9681 -4.4743 19 8 3.0186 4.6690 -5.4531 20 6 3.0536 3.2966 -5.8500 21 6 3.3719 2.4230 -4.6338 22 1 -0.3634 0.5430 0.8725 23 1 -0.3634 0.4841 -0.9065 24 1 -0.3633 -1.0271 0.0341 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.5415 0.3947 3.5798 28 1 0.7498 1.7910 -1.5660 29 1 2.6935 0.7974 -2.5503 30 1 3.6512 2.1645 -1.9321 31 1 0.9620 1.1837 -4.3168 32 1 0.1954 2.4196 -3.2906 33 1 0.6920 2.8247 -4.9513 34 1 3.2631 4.4536 -2.7891 35 1 1.5135 4.3548 -2.4711 36 1 2.0474 6.0328 -4.2423 37 1 1.0382 4.7051 -4.8649 38 1 2.0840 3.0115 -6.2585 39 1 3.8231 3.1573 -6.6093 40 1 3.3555 1.3728 -4.9253 41 1 4.3593 2.6791 -4.2498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135040353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:57 Heat of formation + Delta-G solvation = -66.048468 kcal Electronic energy + Delta-G solvation = -18609.820009 eV Core-core repulsion = 15909.849107 eV Total energy + Delta-G solvation = -2699.970902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78274 -36.78946 -34.82543 -32.01421 -30.97465 -30.21569 -27.66791 -26.67076 -25.11323 -23.49216 -23.11060 -21.84543 -19.27032 -18.33451 -16.46317 -15.88027 -15.64524 -14.94260 -14.86377 -14.58879 -14.22286 -13.90651 -13.47156 -13.01948 -12.48847 -12.36259 -12.27843 -11.92085 -11.77535 -11.54350 -11.20772 -11.06178 -10.92759 -10.78036 -10.56536 -10.49775 -10.21450 -10.05148 -9.88166 -9.71470 -9.54218 -9.22894 -8.89710 -8.32552 -7.15060 -5.95494 -3.96782 3.32944 3.40027 3.44257 3.99550 4.45466 4.81014 4.92526 5.03521 5.21118 5.29386 5.36146 5.43146 5.47193 5.60782 5.67856 5.78445 5.81415 5.99373 6.07659 6.13813 6.18467 6.25785 6.35152 6.36400 6.39412 6.47204 6.58226 6.69783 6.73276 6.90511 7.29339 7.31470 7.32409 7.52166 7.71795 7.91815 8.32020 8.59704 8.66053 9.09019 9.66858 11.11577 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.005853 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.877188 B = 4783.082887 C = 5131.815250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.072 3.928 15 C -0.058 4.058 16 C -0.146 4.146 17 C -0.131 4.131 18 C 0.057 3.943 19 O -0.389 6.389 20 C 0.063 3.937 21 C -0.146 4.146 22 H 0.067 0.933 23 H 0.027 0.973 24 H 0.022 0.978 25 H 0.009 0.991 26 H 0.091 0.909 27 H 0.258 0.742 28 H 0.325 0.675 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 2.554 -13.723 13.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.313 5.313 14 C -0.058 4.058 15 C -0.058 4.058 16 C -0.204 4.204 17 C -0.169 4.169 18 C -0.020 4.020 19 O -0.308 6.308 20 C -0.014 4.014 21 C -0.184 4.184 22 H 0.086 0.914 23 H 0.046 0.954 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.584 3.206 -13.448 13.837 hybrid contribution -0.675 -0.910 0.818 1.398 sum -1.259 2.295 -12.630 12.898 Atomic orbital electron populations 1.21574 0.97727 0.98236 1.00973 1.22094 0.94965 1.01233 1.00099 1.19197 0.95861 0.88524 0.85688 0.95178 1.21076 1.30287 1.11403 0.89707 0.92090 1.24918 0.95603 0.95198 0.98720 1.69884 1.39194 1.24177 1.20449 0.86589 0.78918 0.80356 0.82081 1.20912 1.21477 1.19946 1.60814 1.03658 1.63035 1.03763 1.21887 0.97071 0.95529 0.91300 1.20578 0.94535 0.95999 0.94706 1.21973 0.97075 1.00493 1.00813 1.22070 1.03850 0.93713 0.97276 1.22715 0.90731 0.99793 0.88741 1.87879 1.57464 1.25863 1.59546 1.22544 1.00857 0.82017 0.96010 1.22233 0.99908 0.99941 0.96328 0.91378 0.95366 0.95933 0.97245 0.89027 0.93184 0.85612 0.96665 0.91856 0.93154 0.91649 0.93075 0.91474 0.89184 0.89393 0.93403 0.93330 0.89563 0.91341 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.41 37.16 0.35 -2.36 16 2 C -0.14 -3.37 5.51 -26.74 -0.15 -3.51 16 3 C 0.22 5.24 2.34 -68.87 -0.16 5.08 16 4 H 0.03 0.82 7.67 -51.93 -0.40 0.43 16 5 C -0.49 -13.00 7.30 -34.44 -0.25 -13.25 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.52 5.25 -17.82 -0.09 1.43 16 8 N -0.90 -25.31 11.38 55.43 0.63 -24.68 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.68 -13.84 5.45 -107.95 -0.59 -14.43 16 14 C 0.07 1.27 4.49 -3.83 -0.02 1.26 16 15 C -0.06 -0.82 0.60 -154.32 -0.09 -0.91 16 16 C -0.15 -1.90 7.59 37.16 0.28 -1.62 16 17 C -0.13 -1.91 4.72 -26.59 -0.13 -2.04 16 18 C 0.06 0.72 6.57 37.21 0.24 0.96 16 19 O -0.39 -5.33 10.77 -35.23 -0.38 -5.71 16 20 C 0.06 0.72 6.57 37.21 0.24 0.97 16 21 C -0.15 -1.83 4.92 -26.59 -0.13 -1.96 16 22 H 0.07 1.59 6.95 -51.93 -0.36 1.23 16 23 H 0.03 0.53 6.51 -51.93 -0.34 0.20 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.01 0.20 7.60 -51.93 -0.39 -0.20 16 26 H 0.09 2.41 6.24 -51.93 -0.32 2.09 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.32 6.32 4.88 -39.29 -0.19 6.13 16 29 H 0.02 0.27 7.64 -51.93 -0.40 -0.12 16 30 H 0.06 1.19 7.91 -51.93 -0.41 0.78 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.91 6.71 -51.93 -0.35 0.56 16 33 H 0.05 0.59 5.01 -51.93 -0.26 0.33 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.43 7.73 -51.93 -0.40 1.03 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.56 6.60 -51.93 -0.34 0.22 16 38 H 0.05 0.52 6.61 -51.93 -0.34 0.18 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -27.63 304.89 -7.68 -35.30 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.01 Total: 4.60 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 0.10 Total: -15.96 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.04 Total: -39.10 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.38 Total: -5.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.63 -7.68 -35.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.745 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds