Wall clock time and date at job start Sun Mar 29 2020 23:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47204 * 2 1 4 4 H 1.09003 * 109.47351 * 174.49631 * 3 2 1 5 5 C 1.50699 * 109.47285 * 54.49721 * 3 2 1 6 6 H 1.08003 * 119.99732 * 240.00551 * 5 3 2 7 7 C 1.37880 * 120.00310 * 59.99463 * 5 3 2 8 8 N 1.31515 * 119.99791 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00199 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47344 * 90.00282 * 9 7 5 11 11 H 1.48504 * 109.47168 * 210.00608 * 9 7 5 12 12 H 1.48502 * 109.47260 * 330.00433 * 9 7 5 13 13 N 1.46904 * 109.47281 * 294.49399 * 3 2 1 14 14 C 1.46898 * 111.00051 * 272.77902 * 13 3 2 15 15 C 1.52996 * 109.46940 * 185.84036 * 14 13 3 16 16 C 1.53000 * 109.54465 * 300.17739 * 15 14 13 17 17 C 1.53182 * 109.61980 * 60.38624 * 15 14 13 18 18 C 1.53093 * 109.16493 * 176.87862 * 17 15 14 19 19 O 1.42902 * 109.42313 * 302.41113 * 18 17 15 20 20 C 1.42903 * 114.10120 * 61.15085 * 19 18 17 21 21 C 1.53096 * 109.41405 * 298.84171 * 20 19 18 22 22 H 1.09004 * 109.47159 * 301.89641 * 1 2 3 23 23 H 1.09002 * 109.47436 * 61.89755 * 1 2 3 24 24 H 1.08998 * 109.47217 * 181.90292 * 1 2 3 25 25 H 1.08998 * 109.47232 * 240.00145 * 2 1 3 26 26 H 1.09006 * 109.46934 * 120.00167 * 2 1 3 27 27 H 0.96995 * 119.99975 * 179.97438 * 8 7 5 28 28 H 1.00897 * 110.99780 * 36.73341 * 13 3 2 29 29 H 1.09001 * 109.47227 * 65.83986 * 14 13 3 30 30 H 1.09002 * 109.46894 * 305.83689 * 14 13 3 31 31 H 1.09003 * 109.47058 * 299.82295 * 16 15 14 32 32 H 1.08998 * 109.47215 * 59.81916 * 16 15 14 33 33 H 1.09002 * 109.47118 * 179.82871 * 16 15 14 34 34 H 1.09003 * 109.51192 * 56.98249 * 17 15 14 35 35 H 1.08992 * 109.53278 * 296.79362 * 17 15 14 36 36 H 1.08998 * 109.47845 * 182.42305 * 18 17 15 37 37 H 1.09000 * 109.47751 * 62.39955 * 18 17 15 38 38 H 1.09005 * 109.48013 * 58.81943 * 20 19 18 39 39 H 1.08996 * 109.48426 * 178.84798 * 20 19 18 40 40 H 1.09005 * 109.52048 * 177.51017 * 21 20 19 41 41 H 1.08991 * 109.52401 * 297.63815 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1255 1.4440 0.0986 5 6 1.4295 2.1911 1.1566 6 1 0.8213 3.0647 0.9737 7 6 1.6472 1.7608 2.4484 8 7 2.3880 0.6973 2.6711 9 14 0.8899 2.6885 3.8820 10 1 -0.4501 2.1243 4.1842 11 1 1.7639 2.5548 5.0752 12 1 0.7539 4.1239 3.5264 13 7 1.6618 2.0956 -1.2604 14 6 2.6720 1.8581 -2.3001 15 6 2.3195 2.6694 -3.5484 16 6 0.9433 2.2438 -4.0638 17 6 2.2978 4.1616 -3.2028 18 6 2.0213 4.9681 -4.4743 19 8 3.0186 4.6690 -5.4531 20 6 3.0536 3.2966 -5.8500 21 6 3.3719 2.4230 -4.6338 22 1 -0.3634 0.5430 0.8725 23 1 -0.3634 0.4841 -0.9065 24 1 -0.3633 -1.0271 0.0341 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.5415 0.3947 3.5798 28 1 0.7498 1.7910 -1.5660 29 1 2.6935 0.7974 -2.5503 30 1 3.6512 2.1645 -1.9321 31 1 0.9620 1.1837 -4.3168 32 1 0.1954 2.4196 -3.2906 33 1 0.6920 2.8247 -4.9513 34 1 3.2631 4.4536 -2.7891 35 1 1.5135 4.3548 -2.4711 36 1 2.0474 6.0328 -4.2423 37 1 1.0382 4.7051 -4.8649 38 1 2.0840 3.0115 -6.2585 39 1 3.8231 3.1573 -6.6093 40 1 3.3555 1.3728 -4.9253 41 1 4.3593 2.6791 -4.2498 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135040353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:56 Heat of formation + Delta-G solvation = -82.904002 kcal Electronic energy + Delta-G solvation = -18610.550920 eV Core-core repulsion = 15909.849107 eV Total energy + Delta-G solvation = -2700.701813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88765 -38.38354 -36.25418 -33.92331 -32.08840 -31.81861 -28.93523 -28.26907 -26.65620 -25.14870 -24.36441 -23.11264 -21.15741 -19.47433 -18.22822 -17.11317 -16.90842 -16.65384 -16.31450 -15.76841 -15.56167 -15.23316 -15.04660 -14.56570 -14.22755 -13.91293 -13.70112 -13.28193 -13.02555 -12.83802 -12.74512 -12.64716 -12.45141 -12.24917 -12.13888 -11.95474 -11.86354 -11.60737 -11.39371 -11.18437 -11.05273 -10.91700 -10.42616 -10.23431 -8.85848 -8.04438 -6.12660 1.42579 1.44331 1.54063 2.46126 3.05369 3.24336 3.57909 3.79027 3.93599 4.03882 4.21902 4.37000 4.39797 4.44067 4.53869 4.58449 4.67211 4.75021 4.75397 4.81476 4.83395 4.92614 4.97448 5.05574 5.10047 5.14649 5.17841 5.28363 5.39165 5.43112 5.52863 5.59887 5.69673 5.75022 5.86109 6.34078 6.34862 6.71822 6.91025 7.02026 7.55351 9.00987 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.005853 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.877188 B = 4783.082887 C = 5131.815250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C 0.221 3.779 4 H -0.010 1.010 5 C -0.496 4.496 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.075 3.925 15 C -0.053 4.053 16 C -0.142 4.142 17 C -0.129 4.129 18 C 0.062 3.938 19 O -0.404 6.404 20 C 0.061 3.939 21 C -0.143 4.143 22 H 0.043 0.957 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.258 0.742 28 H 0.333 0.667 29 H 0.016 0.984 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 2.795 -15.408 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.008 0.992 5 C -0.535 4.535 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.311 5.311 14 C -0.055 4.055 15 C -0.054 4.054 16 C -0.199 4.199 17 C -0.167 4.167 18 C -0.015 4.015 19 O -0.323 6.323 20 C -0.015 4.015 21 C -0.181 4.181 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.153 0.847 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.839 3.450 -15.152 15.648 hybrid contribution -0.230 -0.996 1.317 1.667 sum -2.069 2.454 -13.835 14.203 Atomic orbital electron populations 1.21453 0.95779 0.99425 1.00918 1.21939 0.96613 1.00037 0.99131 1.18944 0.93247 0.89476 0.87139 0.99170 1.21296 1.30088 1.11264 0.90818 0.92875 1.25606 0.96025 0.95928 1.01052 1.70020 1.40218 1.25354 1.20772 0.85663 0.78301 0.79219 0.79077 1.20103 1.21455 1.19668 1.60678 1.04646 1.62562 1.03212 1.21900 0.95337 0.96230 0.91987 1.20529 0.96281 0.95026 0.93551 1.21932 0.95407 1.01343 1.01210 1.22007 1.02068 0.94498 0.98127 1.22706 0.91279 0.99997 0.87492 1.87871 1.57852 1.27126 1.59476 1.22706 1.02475 0.80694 0.95627 1.22213 0.98511 1.01201 0.96187 0.93783 0.93136 0.93941 0.95877 0.92241 0.93311 0.84710 0.96565 0.94100 0.92357 0.92661 0.91042 0.93600 0.90786 0.88469 0.91782 0.91703 0.87624 0.89921 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.41 71.98 0.68 -4.21 16 2 C -0.14 -6.44 5.51 30.59 0.17 -6.27 16 3 C 0.22 11.01 2.34 44.17 0.10 11.11 16 4 H -0.01 -0.55 7.67 -2.39 -0.02 -0.57 16 5 C -0.50 -26.97 7.30 25.60 0.19 -26.78 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.64 5.25 84.66 0.44 1.09 16 8 N -0.92 -53.18 11.38 21.45 0.24 -52.94 16 9 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 13 N -0.68 -27.70 5.45 -495.45 -2.70 -30.40 16 14 C 0.08 2.66 4.49 86.30 0.39 3.05 16 15 C -0.05 -1.45 0.60 -52.06 -0.03 -1.48 16 16 C -0.14 -3.30 7.59 71.98 0.55 -2.75 16 17 C -0.13 -3.69 4.72 30.69 0.14 -3.54 16 18 C 0.06 1.44 6.57 72.01 0.47 1.91 16 19 O -0.40 -10.12 10.77 -148.98 -1.60 -11.72 16 20 C 0.06 1.23 6.57 72.01 0.47 1.70 16 21 C -0.14 -3.31 4.92 30.69 0.15 -3.16 16 22 H 0.04 2.02 6.95 -2.39 -0.02 2.00 16 23 H 0.05 1.83 6.51 -2.39 -0.02 1.81 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.02 0.98 7.60 -2.39 -0.02 0.97 16 26 H 0.06 3.19 6.24 -2.38 -0.01 3.17 16 27 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 28 H 0.33 12.63 4.88 -89.70 -0.44 12.19 16 29 H 0.02 0.57 7.64 -2.39 -0.02 0.55 16 30 H 0.04 1.60 7.91 -2.39 -0.02 1.58 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.40 6.71 -2.39 -0.02 1.39 16 33 H 0.07 1.39 5.01 -2.39 -0.01 1.37 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.34 7.73 -2.39 -0.02 2.32 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.30 6.60 -2.39 -0.02 1.29 16 38 H 0.06 1.12 6.61 -2.38 -0.02 1.10 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -59.78 304.89 2.25 -57.54 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.56 Total: 20.86 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 3.73 Total: -29.34 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.46 Total: -83.34 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.60 Total: -11.72 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -59.78 2.25 -57.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135040353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.368 kcal (2) G-P(sol) polarization free energy of solvation -59.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds