Wall clock time and date at job start Sun Mar 29 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 C 1.52996 * 109.50387 * 304.91079 * 3 2 1 5 5 C 1.53100 * 109.50489 * 184.78114 * 3 2 1 6 6 N 1.47009 * 109.25757 * 183.21500 * 5 3 2 7 7 C 1.46902 * 111.00296 * 182.39547 * 6 5 3 8 8 C 1.53006 * 109.46626 * 302.41143 * 7 6 5 9 9 C 1.52999 * 109.46623 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46953 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99816 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99769 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00300 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46755 * 89.99832 * 14 12 10 16 16 H 1.48495 * 109.46931 * 209.99846 * 14 12 10 17 17 H 1.48500 * 109.46738 * 330.00088 * 14 12 10 18 18 C 1.47010 * 110.75517 * 58.61471 * 6 5 3 19 19 C 1.53101 * 109.25899 * 301.38904 * 18 6 5 20 20 O 1.43011 * 109.50537 * 64.99825 * 3 2 1 21 21 H 1.08997 * 109.46997 * 300.00540 * 1 2 3 22 22 H 1.09001 * 109.46803 * 59.99974 * 1 2 3 23 23 H 1.09002 * 109.47398 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46997 * 239.99460 * 2 1 3 25 25 H 1.09001 * 109.46803 * 120.00026 * 2 1 3 26 26 H 1.09002 * 109.46925 * 180.09009 * 4 3 2 27 27 H 1.08997 * 109.47314 * 300.08608 * 4 3 2 28 28 H 1.09003 * 109.47108 * 60.08924 * 4 3 2 29 29 H 1.09008 * 109.50670 * 63.27787 * 5 3 2 30 30 H 1.09002 * 109.50707 * 303.15341 * 5 3 2 31 31 H 1.08993 * 109.47737 * 182.41274 * 7 6 5 32 32 H 1.09000 * 109.47263 * 62.40836 * 7 6 5 33 33 H 1.09000 * 109.47050 * 299.99824 * 8 7 6 34 34 H 1.09001 * 109.46801 * 59.99937 * 8 7 6 35 35 H 1.09000 * 109.47486 * 299.99829 * 9 8 7 36 36 H 1.09001 * 109.47362 * 60.00551 * 9 8 7 37 37 H 0.97000 * 120.00540 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.50285 * 61.32053 * 18 6 5 39 39 H 1.08998 * 109.50758 * 181.40506 * 18 6 5 40 40 H 1.08999 * 109.50263 * 176.78043 * 19 18 6 41 41 H 1.08998 * 109.49982 * 296.86566 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4322 2.1992 -1.1826 5 6 3.5663 1.4450 -0.1203 6 7 4.0565 2.8287 -0.0423 7 6 5.5149 2.8809 -0.2107 8 6 6.1829 2.0114 0.8564 9 6 7.7018 2.0652 0.6806 10 6 8.3599 1.2093 1.7320 11 1 7.7551 0.6795 2.4532 12 6 9.7339 1.1024 1.7734 13 7 10.4702 1.7471 0.8949 14 14 10.5495 0.0420 3.0771 15 1 10.7056 -1.3423 2.5626 16 1 11.8852 0.6016 3.4057 17 1 9.7060 0.0237 4.2991 18 6 3.6497 3.4549 1.2241 19 6 2.1226 3.4322 1.3309 20 8 1.6621 2.0826 1.2217 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.7972 3.2263 -1.1830 27 1 1.7206 1.7108 -2.1134 28 1 0.3458 2.1996 -1.0940 29 1 3.8568 1.0092 -1.0763 30 1 3.9965 0.8600 0.6927 31 1 5.8562 3.9107 -0.1060 32 1 5.7799 2.5091 -1.2005 33 1 5.9179 2.3831 1.8462 34 1 5.8416 0.9815 0.7517 35 1 7.9665 1.6932 -0.3092 36 1 8.0434 3.0950 0.7851 37 1 11.4368 1.6717 0.9236 38 1 4.0812 2.9021 2.0585 39 1 4.0017 4.4862 1.2498 40 1 1.8190 3.8436 2.2935 41 1 1.6927 4.0303 0.5275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135589911.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:24 Heat of formation + Delta-G solvation = -62.578203 kcal Electronic energy + Delta-G solvation = -18251.323429 eV Core-core repulsion = 15551.503009 eV Total energy + Delta-G solvation = -2699.820420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11411 -36.52574 -34.47670 -33.41924 -31.22493 -30.03561 -28.67303 -26.96530 -25.18888 -24.02319 -22.91942 -21.20752 -20.11789 -18.84130 -16.54713 -16.27305 -15.92717 -15.14351 -14.79452 -14.62975 -14.34975 -14.08251 -13.69914 -13.65446 -13.07528 -12.32205 -12.25789 -12.09536 -11.99497 -11.78158 -11.59090 -11.35553 -11.16715 -10.96234 -10.85098 -10.73555 -10.65592 -10.55989 -10.16155 -9.63097 -9.45461 -9.40650 -9.18604 -8.35837 -7.89806 -6.00716 -4.03393 3.30812 3.36986 3.40653 3.77953 4.11832 4.45205 4.77439 4.86842 5.01046 5.12906 5.25313 5.32195 5.34637 5.37830 5.51186 5.58159 5.59700 5.66383 5.75321 5.85408 5.89271 5.98099 6.01534 6.03263 6.05292 6.12391 6.22201 6.28860 6.40608 6.57696 6.75902 7.02949 7.23669 7.32782 7.35378 7.65159 7.79614 7.98541 8.42034 9.03427 9.60827 11.10358 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034539 B = 0.004795 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.490544 B = 5837.682715 C = 6108.113447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C 0.118 3.882 4 C -0.168 4.168 5 C 0.027 3.973 6 N -0.534 5.534 7 C 0.052 3.948 8 C -0.145 4.145 9 C 0.025 3.975 10 C -0.520 4.520 11 H 0.052 0.948 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.013 3.987 19 C 0.063 3.937 20 O -0.377 6.377 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.700 1.067 -2.926 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C 0.079 3.921 4 C -0.226 4.226 5 C -0.102 4.102 6 N -0.258 5.258 7 C -0.075 4.075 8 C -0.183 4.183 9 C -0.013 4.013 10 C -0.559 4.559 11 H 0.071 0.929 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.116 4.116 19 C -0.014 4.014 20 O -0.296 6.296 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.845 1.287 -3.229 19.163 hybrid contribution 1.303 -0.864 1.196 1.968 sum -17.542 0.424 -2.034 17.665 Atomic orbital electron populations 1.21761 0.95311 1.01201 1.02299 1.21493 0.96642 0.93940 1.02745 1.21559 0.92798 0.92910 0.84863 1.22317 1.00497 1.01978 0.97770 1.22763 0.94446 0.90625 1.02324 1.62549 1.13631 1.16667 1.32943 1.22347 0.84488 1.00802 0.99862 1.22223 1.00137 0.98477 0.97503 1.19017 0.88096 0.97100 0.97036 1.21252 0.91491 1.28550 1.14588 0.92929 1.25020 0.97551 0.95849 0.95981 1.69961 1.05282 1.42567 1.35688 0.86612 0.78816 0.80611 0.82091 1.20643 1.21165 1.19923 1.22781 0.96136 1.00537 0.92101 1.22640 0.93050 0.84017 1.01661 1.87980 1.76710 1.26283 1.38596 0.92096 0.92558 0.93056 0.90632 0.91211 0.91111 0.91959 0.92329 0.90090 0.93099 0.91036 0.90973 0.93411 0.93238 0.96617 0.96644 0.93000 0.93295 0.89999 0.88992 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.32 37.16 0.35 -1.08 16 2 C -0.11 -1.22 5.23 -26.73 -0.14 -1.36 16 3 C 0.12 1.49 0.80 -90.57 -0.07 1.42 16 4 C -0.17 -1.88 7.68 37.16 0.29 -1.59 16 5 C 0.03 0.39 3.83 -3.71 -0.01 0.38 16 6 N -0.53 -8.11 4.30 -234.31 -1.01 -9.11 16 7 C 0.05 0.91 5.38 -3.82 -0.02 0.89 16 8 C -0.14 -3.02 4.44 -26.73 -0.12 -3.14 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 14 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.01 0.18 5.33 -3.71 -0.02 0.16 16 19 C 0.06 0.77 6.61 37.21 0.25 1.02 16 20 O -0.38 -5.19 9.82 -35.23 -0.35 -5.54 16 21 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 22 H 0.06 0.50 6.35 -51.93 -0.33 0.17 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.85 6.13 -51.93 -0.32 0.53 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.60 6.35 -51.93 -0.33 0.27 16 29 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.05 0.84 6.41 -51.93 -0.33 0.50 16 31 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.01 6.61 -51.93 -0.34 0.67 16 34 H 0.05 1.04 6.42 -51.93 -0.33 0.71 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.05 0.78 6.59 -51.93 -0.34 0.44 16 39 H 0.08 1.08 8.12 -51.93 -0.42 0.65 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.65 6.50 -51.93 -0.34 0.32 16 LS Contribution 311.17 15.07 4.69 4.69 Total: -1.00 -30.41 311.17 -8.27 -38.68 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -7.26 Total: -2.63 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.06 Total: -16.56 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.27 Total: -35.56 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.35 Total: -5.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.41 -8.27 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135589911.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.897 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds