Wall clock time and date at job start Sun Mar 29 2020 22:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46929 * 2 1 4 4 C 1.52998 * 109.54150 * 59.89082 * 3 2 1 5 5 C 1.53102 * 109.50727 * 180.02562 * 3 2 1 6 6 N 1.47016 * 109.25606 * 176.78217 * 5 3 2 7 7 C 1.46902 * 110.99529 * 177.60836 * 6 5 3 8 8 C 1.53002 * 109.46717 * 170.00262 * 7 6 5 9 9 C 1.53007 * 109.46871 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46821 * 179.97438 * 9 8 7 11 11 H 1.07991 * 120.00448 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99663 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99864 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99902 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47076 * 60.00022 * 14 12 10 16 16 H 1.48501 * 109.47122 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47321 * 299.99831 * 14 12 10 18 18 C 1.47014 * 110.75376 * 301.38313 * 6 5 3 19 19 C 1.53096 * 109.25577 * 58.61838 * 18 6 5 20 20 O 1.43016 * 109.50507 * 299.78467 * 3 2 1 21 21 H 1.08990 * 109.47397 * 60.00343 * 1 2 3 22 22 H 1.09007 * 109.46645 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46935 * 299.99720 * 1 2 3 24 24 H 1.08997 * 109.47094 * 240.00025 * 2 1 3 25 25 H 1.09006 * 109.47428 * 119.99958 * 2 1 3 26 26 H 1.09008 * 109.46892 * 180.10478 * 4 3 2 27 27 H 1.08990 * 109.47251 * 300.10717 * 4 3 2 28 28 H 1.08998 * 109.46883 * 60.11285 * 4 3 2 29 29 H 1.08999 * 109.50407 * 56.85136 * 5 3 2 30 30 H 1.09000 * 109.50181 * 296.71691 * 5 3 2 31 31 H 1.09008 * 109.47180 * 289.99595 * 7 6 5 32 32 H 1.08997 * 109.47619 * 50.00111 * 7 6 5 33 33 H 1.08995 * 109.46881 * 299.99305 * 8 7 6 34 34 H 1.08992 * 109.47291 * 60.00039 * 8 7 6 35 35 H 1.09001 * 109.47045 * 300.00069 * 9 8 7 36 36 H 1.09002 * 109.47215 * 59.99430 * 9 8 7 37 37 H 0.97007 * 119.99723 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.50527 * 178.55195 * 18 6 5 39 39 H 1.09000 * 109.50818 * 298.63881 * 18 6 5 40 40 H 1.08995 * 109.50552 * 63.08831 * 19 18 6 41 41 H 1.09006 * 109.50337 * 183.21659 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5286 2.1661 1.2473 5 6 3.5710 1.4435 -0.0006 6 7 4.0549 2.8296 -0.0785 7 6 5.5221 2.8787 -0.0245 8 6 5.9974 4.2947 -0.3561 9 6 7.5256 4.3460 -0.2992 10 6 7.9938 5.7405 -0.6264 11 1 7.2737 6.5128 -0.8527 12 6 9.3418 6.0304 -0.6369 13 7 10.2187 5.0900 -0.3608 14 14 9.9222 7.7588 -1.0431 15 1 9.3572 8.7152 -0.0576 16 1 11.4053 7.8089 -0.9866 17 1 9.4657 8.1264 -2.4075 18 6 3.5499 3.4903 -1.2909 19 6 2.0191 3.4687 -1.2772 20 8 1.5678 2.1159 -1.1700 21 1 -0.3633 0.5137 -0.8899 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8910 3.1941 1.2452 27 1 0.4387 2.1651 1.2467 28 1 1.8920 1.6546 2.1386 29 1 3.9349 0.8821 -0.8611 30 1 3.9356 0.9817 0.9169 31 1 5.8581 2.6077 0.9764 32 1 5.9361 2.1774 -0.7491 33 1 5.6615 4.5656 -1.3570 34 1 5.5835 4.9958 0.3684 35 1 7.8612 4.0751 0.7018 36 1 7.9399 3.6446 -1.0235 37 1 11.1671 5.2939 -0.3685 38 1 3.8992 4.5226 -1.3151 39 1 3.9141 2.9620 -2.1719 40 1 1.6546 4.0431 -0.4256 41 1 1.6407 3.9065 -2.2010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135589928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:25 Heat of formation + Delta-G solvation = -80.428440 kcal Electronic energy + Delta-G solvation = -18047.103699 eV Core-core repulsion = 15346.509234 eV Total energy + Delta-G solvation = -2700.594465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.15988 -37.79697 -35.51155 -35.34825 -33.21819 -31.00676 -29.98487 -28.55030 -26.55773 -25.06048 -24.43129 -22.58834 -21.25279 -20.22999 -18.52852 -17.33223 -17.15620 -16.55598 -16.49108 -16.04499 -15.71292 -15.30148 -15.11327 -14.67403 -14.27060 -14.10071 -13.71429 -13.28232 -13.11705 -12.91202 -12.88594 -12.79556 -12.65321 -12.45726 -12.38231 -12.08862 -11.82626 -11.63447 -11.56502 -11.35609 -11.29384 -10.98639 -10.56739 -10.46652 -9.35108 -8.21476 -6.32958 1.39367 1.42647 1.50567 2.39841 2.73793 2.88905 3.11661 3.72285 3.90361 3.98459 4.05693 4.12969 4.22771 4.28165 4.42042 4.46236 4.58726 4.63224 4.63977 4.69969 4.75250 4.80306 4.87453 4.98082 4.98555 5.06072 5.13038 5.15412 5.19383 5.24898 5.40806 5.48433 5.56346 5.69921 5.82506 5.96113 6.02316 6.23994 6.29666 6.83584 7.36430 8.90364 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056635 B = 0.004131 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.275645 B = 6775.859872 C = 7018.608063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.117 3.883 4 C -0.164 4.164 5 C 0.028 3.972 6 N -0.534 5.534 7 C 0.066 3.934 8 C -0.094 4.094 9 C 0.026 3.974 10 C -0.544 4.544 11 H 0.061 0.939 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.011 3.989 19 C 0.066 3.934 20 O -0.388 6.388 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.021 0.979 33 H 0.054 0.946 34 H 0.056 0.944 35 H -0.008 1.008 36 H -0.012 1.012 37 H 0.264 0.736 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.457 -7.914 1.049 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C 0.077 3.923 4 C -0.221 4.221 5 C -0.101 4.101 6 N -0.258 5.258 7 C -0.061 4.061 8 C -0.132 4.132 9 C -0.011 4.011 10 C -0.582 4.582 11 H 0.079 0.921 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.117 4.117 19 C -0.011 4.011 20 O -0.307 6.307 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.011 0.989 36 H 0.006 0.994 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -19.584 -7.787 1.341 21.118 hybrid contribution 1.561 0.419 -0.778 1.794 sum -18.023 -7.368 0.563 19.479 Atomic orbital electron populations 1.21699 0.94268 1.02033 1.02137 1.21529 0.97606 0.92408 1.03033 1.21679 0.90607 0.93952 0.86030 1.22263 1.01528 1.01367 0.96978 1.22867 0.96521 0.89058 1.01620 1.62328 1.09191 1.16330 1.37988 1.22071 0.86437 0.97057 1.00552 1.21518 0.96046 0.95252 1.00377 1.18961 0.91831 0.95513 0.94829 1.21657 0.92394 0.96948 1.47241 0.92125 1.26006 0.97125 1.01756 0.95009 1.70096 1.01991 1.35143 1.50204 0.85483 0.76995 0.79243 0.79233 1.19062 1.20814 1.19126 1.22923 0.97234 1.00796 0.90795 1.22735 0.91382 0.83729 1.03241 1.87969 1.73067 1.25736 1.43923 0.93192 0.91654 0.91941 0.91990 0.89101 0.92351 0.91181 0.90980 0.95280 0.89120 0.91005 0.96097 0.92754 0.92536 0.98911 0.99384 0.92736 0.89213 0.95397 0.91605 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.42 71.98 0.68 -1.57 16 2 C -0.11 -1.92 5.21 30.59 0.16 -1.76 16 3 C 0.12 2.58 0.79 -10.76 -0.01 2.58 16 4 C -0.16 -3.31 7.82 71.98 0.56 -2.74 16 5 C 0.03 0.71 4.32 86.32 0.37 1.09 16 6 N -0.53 -16.12 4.25 -895.18 -3.80 -19.92 16 7 C 0.07 2.38 5.28 86.30 0.46 2.84 16 8 C -0.09 -3.96 4.42 30.60 0.14 -3.83 16 9 C 0.03 1.42 4.97 29.85 0.15 1.56 16 10 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 11 H 0.06 3.34 7.74 -2.92 -0.02 3.32 16 12 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 13 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 14 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 C 0.01 0.30 4.94 86.31 0.43 0.73 16 19 C 0.07 1.54 6.61 72.01 0.48 2.02 16 20 O -0.39 -9.68 9.62 -148.98 -1.43 -11.12 16 21 H 0.05 0.91 7.69 -2.39 -0.02 0.89 16 22 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 23 H 0.06 0.89 6.43 -2.38 -0.02 0.88 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.06 1.36 6.12 -2.38 -0.01 1.35 16 27 H 0.07 1.25 6.43 -2.39 -0.02 1.23 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 33 H 0.05 2.22 6.28 -2.39 -0.01 2.21 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 38 H 0.09 2.65 6.05 -2.39 -0.01 2.64 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.48 6.49 -2.39 -0.02 1.46 16 41 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -64.54 313.67 2.15 -62.39 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.97 Total: 9.29 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 4.10 Total: -29.93 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.52 Total: -77.23 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.43 Total: -11.12 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.54 2.15 -62.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135589928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.037 kcal (2) G-P(sol) polarization free energy of solvation -64.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds