Wall clock time and date at job start Sun Mar 29 2020 22:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46933 * 2 1 4 4 C 1.53001 * 112.90167 * 50.20518 * 3 2 1 5 5 C 1.53000 * 109.47607 * 71.55746 * 4 3 2 6 6 C 1.53776 * 113.61781 * 278.95496 * 3 2 1 7 7 H 1.09002 * 113.61744 * 105.46124 * 6 3 2 8 8 N 1.46508 * 113.61145 * 334.56460 * 6 3 2 9 9 C 1.46503 * 119.99795 * 111.90262 * 8 6 3 10 10 C 1.36933 * 120.00117 * 291.90255 * 8 6 3 11 11 H 1.08002 * 119.99632 * 320.27101 * 10 8 6 12 12 C 1.38807 * 119.99904 * 140.27293 * 10 8 6 13 13 N 1.31631 * 119.99610 * 171.54547 * 12 10 8 14 14 Si 1.86799 * 120.00472 * 351.54292 * 12 10 8 15 15 H 1.48503 * 109.46922 * 91.61755 * 14 12 10 16 16 H 1.48498 * 109.47237 * 211.61947 * 14 12 10 17 17 H 1.48503 * 109.46631 * 331.61937 * 14 12 10 18 18 C 1.53776 * 87.08194 * 220.01775 * 6 3 2 19 19 C 1.53776 * 113.61406 * 181.45475 * 3 2 1 20 20 H 1.09002 * 113.61273 * 254.52794 * 19 3 2 21 21 O 1.42893 * 113.61837 * 25.43397 * 19 3 2 22 22 C 1.42900 * 114.00532 * 209.99838 * 21 19 3 23 23 H 1.09002 * 109.47235 * 57.79302 * 1 2 3 24 24 H 1.09004 * 109.46933 * 177.78614 * 1 2 3 25 25 H 1.08993 * 109.47841 * 297.78573 * 1 2 3 26 26 H 1.08997 * 109.47468 * 240.00144 * 2 1 3 27 27 H 1.09001 * 109.47197 * 119.99897 * 2 1 3 28 28 H 1.09002 * 109.46683 * 191.55543 * 4 3 2 29 29 H 1.08996 * 109.47580 * 311.54945 * 4 3 2 30 30 H 1.08996 * 109.46899 * 305.70147 * 5 4 3 31 31 H 1.09000 * 109.46829 * 65.69516 * 5 4 3 32 32 H 1.08999 * 109.47584 * 185.69138 * 5 4 3 33 33 H 1.08995 * 109.47300 * 84.56395 * 9 8 6 34 34 H 1.09003 * 109.47074 * 204.56802 * 9 8 6 35 35 H 1.08997 * 109.47087 * 324.56252 * 9 8 6 36 36 H 0.97003 * 119.99660 * 179.97438 * 13 12 10 37 37 H 1.08998 * 113.61631 * 270.88188 * 18 6 3 38 38 H 1.09002 * 113.61664 * 139.97888 * 18 6 3 39 39 H 1.08996 * 109.47335 * 179.97438 * 22 21 19 40 40 H 1.08994 * 109.46937 * 300.00105 * 22 21 19 41 41 H 1.08998 * 109.46719 * 59.99874 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.3879 2.3046 1.0829 5 6 1.9145 1.8831 2.4562 6 6 2.0385 2.0965 -1.3918 7 1 1.2386 2.8236 -1.5318 8 7 2.1334 1.1342 -2.4924 9 6 0.9928 0.9324 -3.3893 10 6 3.2882 0.4234 -2.6827 11 1 4.2462 0.9043 -2.5507 12 6 3.2276 -0.9151 -3.0454 13 7 4.3256 -1.5539 -3.3900 14 14 1.5878 -1.8097 -3.0444 15 1 0.9682 -1.7092 -4.3902 16 1 1.8039 -3.2390 -2.7044 17 1 0.6876 -1.1921 -2.0376 18 6 3.3866 2.7297 -1.0092 19 6 3.5732 1.5539 -0.0358 20 1 4.0124 1.8431 0.9190 21 8 4.2159 0.4209 -0.6232 22 6 5.5197 0.1566 -0.1013 23 1 -0.3634 0.5477 -0.8695 24 1 -0.3633 -1.0269 -0.0397 25 1 -0.3634 0.4790 0.9091 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6295 3.3529 0.9072 29 1 0.3066 2.1709 1.0517 30 1 1.7634 0.8121 2.5902 31 1 2.9783 2.1111 2.5230 32 1 1.3771 2.4261 3.2338 33 1 1.0116 1.6862 -4.1764 34 1 1.0526 -0.0604 -3.8355 35 1 0.0655 1.0211 -2.8235 36 1 4.2833 -2.4894 -3.6431 37 1 3.2904 3.6957 -0.5136 38 1 4.1106 2.7411 -1.8240 39 1 5.9395 -0.7181 -0.5979 40 1 6.1631 1.0186 -0.2776 41 1 5.4507 -0.0323 0.9700 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140663167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:01 Heat of formation + Delta-G solvation = 6.163330 kcal Electronic energy + Delta-G solvation = -20181.859655 eV Core-core repulsion = 17485.020091 eV Total energy + Delta-G solvation = -2696.839564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45404 -37.16340 -36.29543 -33.79399 -32.97019 -31.78691 -27.75421 -27.47959 -26.35781 -25.93409 -24.40012 -22.90647 -21.58125 -19.12405 -18.27256 -17.51484 -16.92227 -16.38291 -15.93009 -15.77871 -15.39017 -15.05630 -14.61126 -14.26496 -14.16303 -13.96251 -13.58393 -13.44985 -13.29353 -13.01190 -12.68038 -12.57150 -12.41112 -12.08956 -11.99679 -11.70871 -11.65014 -11.37360 -11.32537 -10.82386 -10.62662 -10.46870 -10.31990 -9.73190 -8.39575 -7.82868 -5.24206 1.37472 1.50960 1.59003 2.62356 3.11070 3.39526 3.61574 3.93242 4.04852 4.23738 4.30501 4.36472 4.52534 4.55212 4.57547 4.62395 4.69383 4.73383 4.77461 4.82039 4.88789 4.96289 4.99897 5.04635 5.07278 5.11951 5.16323 5.25869 5.30572 5.40305 5.45864 5.56856 5.66227 5.80042 6.06181 6.26421 6.59128 6.94575 7.27953 7.91017 8.28187 9.34262 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.013511 C = 0.011271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.843436 B = 2071.959162 C = 2483.575184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.146 4.146 6 C 0.167 3.833 7 H 0.080 0.920 8 N -0.607 5.607 9 C 0.109 3.891 10 C -0.164 4.164 11 H 0.069 0.931 12 C -0.026 4.026 13 N -0.964 5.964 14 Si 0.920 3.080 15 H -0.306 1.306 16 H -0.341 1.341 17 H -0.213 1.213 18 C -0.168 4.168 19 C 0.063 3.937 20 H 0.066 0.934 21 O -0.318 6.318 22 C 0.024 3.976 23 H 0.048 0.952 24 H 0.033 0.967 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.246 0.754 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 9.115 10.769 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C -0.100 4.100 4 C -0.129 4.129 5 C -0.203 4.203 6 C 0.059 3.941 7 H 0.098 0.902 8 N -0.329 5.329 9 C -0.035 4.035 10 C -0.293 4.293 11 H 0.086 0.914 12 C -0.218 4.218 13 N -0.613 5.613 14 Si 0.755 3.245 15 H -0.236 1.236 16 H -0.273 1.273 17 H -0.136 1.136 18 C -0.206 4.206 19 C 0.004 3.996 20 H 0.084 0.916 21 O -0.235 6.235 22 C -0.073 4.073 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.125 0.875 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.907 8.895 10.563 15.440 hybrid contribution 0.093 -1.228 -0.359 1.283 sum -6.814 7.667 10.204 14.468 Atomic orbital electron populations 1.21755 0.96015 1.00126 1.01494 1.21406 0.95261 0.96728 1.01409 1.22776 0.93729 0.95890 0.97571 1.21293 1.00218 0.98551 0.92837 1.21727 1.00958 1.00983 0.96667 1.21464 0.95823 0.90546 0.86222 0.90229 1.43992 1.12547 1.46733 1.29632 1.21434 0.90385 0.97914 0.93719 1.18581 0.85615 0.90031 1.35100 0.91400 1.25824 0.97582 0.97100 1.01297 1.69874 1.28678 1.09890 1.52824 0.86577 0.84698 0.75568 0.77659 1.23602 1.27318 1.13585 1.23774 0.99145 0.98182 0.99531 1.23137 0.94054 0.88088 0.94293 0.91593 1.89216 1.28358 1.46733 1.59238 1.22684 0.87824 0.99611 0.97155 0.93295 0.94753 0.91222 0.90868 0.94975 0.90737 0.90622 0.93889 0.93185 0.91234 0.95688 0.95995 0.92435 0.94535 0.87499 0.93694 0.92649 0.94958 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 7.90 71.98 0.57 -3.76 16 2 C -0.11 -4.16 4.25 30.60 0.13 -4.03 16 3 C -0.10 -3.17 0.52 -51.66 -0.03 -3.19 16 4 C -0.09 -2.18 5.03 30.59 0.15 -2.03 16 5 C -0.15 -3.20 9.56 71.98 0.69 -2.51 16 6 C 0.17 6.00 4.04 45.51 0.18 6.18 16 7 H 0.08 2.48 8.07 -2.39 -0.02 2.47 16 8 N -0.61 -26.98 1.91 -699.84 -1.34 -28.32 16 9 C 0.11 4.49 9.03 127.77 1.15 5.64 16 10 C -0.16 -8.77 5.50 84.03 0.46 -8.31 16 11 H 0.07 4.08 5.49 -2.91 -0.02 4.06 16 12 C -0.03 -1.48 5.19 84.86 0.44 -1.04 16 13 N -0.96 -61.10 13.97 21.65 0.30 -60.80 16 14 Si 0.92 46.98 22.56 68.60 1.55 48.53 16 15 H -0.31 -15.60 6.77 99.48 0.67 -14.92 16 16 H -0.34 -18.79 7.11 99.48 0.71 -18.08 16 17 H -0.21 -9.56 4.01 99.48 0.40 -9.16 16 18 C -0.17 -5.76 6.93 31.12 0.22 -5.55 16 19 C 0.06 2.25 3.62 31.12 0.11 2.36 16 20 H 0.07 2.09 6.21 -2.39 -0.01 2.07 16 21 O -0.32 -14.37 4.87 -148.98 -0.73 -15.10 16 22 C 0.02 0.96 10.85 113.37 1.23 2.19 16 23 H 0.05 1.55 6.84 -2.39 -0.02 1.53 16 24 H 0.03 1.09 8.03 -2.38 -0.02 1.08 16 25 H 0.07 1.80 6.49 -2.39 -0.02 1.78 16 26 H 0.07 3.35 2.05 -2.39 0.00 3.34 16 27 H 0.03 1.21 7.40 -2.39 -0.02 1.19 16 28 H 0.07 1.55 7.34 -2.39 -0.02 1.53 16 29 H 0.08 1.68 6.08 -2.39 -0.01 1.66 16 30 H 0.04 1.05 7.13 -2.39 -0.02 1.03 16 31 H 0.05 1.10 6.67 -2.39 -0.02 1.09 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.02 1.01 2.71 -2.39 -0.01 1.00 16 35 H 0.06 2.02 6.81 -2.39 -0.02 2.01 16 36 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.11 2.85 7.66 -2.39 -0.02 2.83 16 38 H 0.04 1.84 6.95 -2.39 -0.02 1.82 16 39 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.58 284.58 5.76 -59.82 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.67 Total: 9.91 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.31 Total: -14.04 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -1.04 Total: -89.11 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.73 Total: -15.10 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.55 Total: 48.53 kcal Total: -65.58 5.76 -59.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140663167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.982 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds