Wall clock time and date at job start Sun Mar 29 2020 22:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 C 1.53000 * 112.85099 * 161.58135 * 3 2 1 5 5 C 1.53008 * 109.46906 * 305.35696 * 4 3 2 6 6 C 1.53776 * 113.61168 * 30.27573 * 3 2 1 7 7 H 1.08994 * 113.61574 * 105.47389 * 6 3 2 8 8 O 1.42897 * 113.61641 * 334.65105 * 6 3 2 9 9 C 1.42902 * 114.00216 * 150.00502 * 8 6 3 10 10 C 1.53782 * 87.08313 * 220.02122 * 6 3 2 11 11 C 1.53779 * 113.61126 * 292.78028 * 3 2 1 12 12 H 1.09003 * 113.61252 * 254.60818 * 11 3 2 13 13 N 1.46497 * 113.61912 * 25.43076 * 11 3 2 14 14 C 1.46499 * 119.99951 * 100.53413 * 13 11 3 15 15 C 1.36939 * 119.99844 * 280.53502 * 13 11 3 16 16 H 1.07998 * 120.00201 * 351.56532 * 15 13 11 17 17 C 1.38814 * 119.99868 * 171.27872 * 15 13 11 18 18 N 1.31622 * 119.99945 * 340.46664 * 17 15 13 19 19 Si 1.86794 * 119.99908 * 160.45538 * 17 15 13 20 20 H 1.48505 * 109.47303 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47192 * 120.00386 * 19 17 15 22 22 H 1.48502 * 109.47345 * 240.00805 * 19 17 15 23 23 H 1.08995 * 109.47029 * 276.94718 * 1 2 3 24 24 H 1.09000 * 109.46869 * 36.94636 * 1 2 3 25 25 H 1.08997 * 109.46976 * 156.94642 * 1 2 3 26 26 H 1.09000 * 109.47193 * 240.00131 * 2 1 3 27 27 H 1.09000 * 109.47408 * 119.99894 * 2 1 3 28 28 H 1.08994 * 109.47050 * 65.34906 * 4 3 2 29 29 H 1.08997 * 109.46868 * 185.35417 * 4 3 2 30 30 H 1.08993 * 109.47529 * 67.10721 * 5 4 3 31 31 H 1.09002 * 109.46650 * 187.11209 * 5 4 3 32 32 H 1.09000 * 109.46792 * 307.10305 * 5 4 3 33 33 H 1.09005 * 109.47426 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46600 * 299.99451 * 9 8 6 35 35 H 1.08994 * 109.47663 * 59.99689 * 9 8 6 36 36 H 1.09003 * 113.61088 * 270.88831 * 10 6 3 37 37 H 1.08992 * 113.61918 * 139.98214 * 10 6 3 38 38 H 1.08997 * 109.47477 * 267.88084 * 14 13 11 39 39 H 1.08997 * 109.47097 * 27.88765 * 14 13 11 40 40 H 1.09009 * 109.46666 * 147.88298 * 14 13 11 41 41 H 0.96997 * 119.99337 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.4993 1.5568 0.4455 5 6 3.6687 0.8910 1.8126 6 6 1.0981 2.4289 0.7104 7 1 1.4564 2.7466 1.6895 8 8 -0.2663 2.0045 0.7297 9 6 -1.0012 2.4619 1.8666 10 6 1.4194 3.4251 -0.4162 11 6 1.7310 2.2051 -1.2991 12 1 2.6000 2.3410 -1.9429 13 7 0.5645 1.6888 -2.0195 14 6 -0.7262 2.3732 -1.9097 15 6 0.6806 0.5664 -2.7954 16 1 1.6544 0.1407 -2.9869 17 6 -0.4541 -0.0275 -3.3310 18 7 -1.6365 0.2241 -2.8105 19 14 -0.3027 -1.1834 -4.7905 20 1 1.1244 -1.2987 -5.1848 21 1 -0.8224 -2.5234 -4.4167 22 1 -1.0897 -0.6474 -5.9301 23 1 -0.3633 0.1243 1.0201 24 1 -0.3633 0.8213 -0.6177 25 1 -0.3633 -0.9456 -0.4024 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1412 1.0605 -0.2823 29 1 3.7761 2.6086 0.5167 30 1 3.5145 -0.1836 1.7152 31 1 4.6746 1.0812 2.1872 32 1 2.9380 1.3013 2.5096 33 1 -2.0268 2.0973 1.8071 34 1 -0.5343 2.0850 2.7766 35 1 -1.0031 3.5517 1.8838 36 1 2.2891 4.0497 -0.2119 37 1 0.5552 3.9979 -0.7522 38 1 -1.3030 1.9328 -1.0964 39 1 -0.5603 3.4311 -1.7062 40 1 -1.2755 2.2648 -2.8449 41 1 -2.4293 -0.1912 -3.1845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140663672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:07 Heat of formation + Delta-G solvation = 50.696312 kcal Electronic energy + Delta-G solvation = -20124.080380 eV Core-core repulsion = 17429.171911 eV Total energy + Delta-G solvation = -2694.908469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.27475 -35.89095 -34.53628 -32.21262 -30.61750 -29.81377 -26.54857 -25.94565 -24.46275 -23.95228 -22.49607 -21.45335 -20.08186 -17.55890 -16.56576 -16.16105 -15.12581 -14.81231 -14.30288 -13.77619 -13.70244 -13.65021 -13.35667 -12.78005 -12.41156 -12.16209 -11.79414 -11.51568 -11.22958 -11.15991 -10.78953 -10.75628 -10.70054 -10.47636 -10.22929 -10.02074 -9.98283 -9.77180 -9.57933 -9.26743 -9.03466 -8.70672 -8.14097 -7.95747 -6.58296 -5.58054 -2.88441 3.46888 3.55147 3.56165 4.37552 4.62153 5.18346 5.24605 5.47510 5.50243 5.56294 5.62762 5.64160 5.77095 5.85733 5.87036 5.98556 6.09714 6.15350 6.24712 6.28009 6.32490 6.42107 6.51411 6.68256 6.73729 6.89758 6.91744 7.09010 7.25224 7.36774 7.66664 7.72086 7.76561 7.89969 7.98171 8.06203 8.51262 8.83359 9.39721 10.04523 10.49575 11.46579 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026322 B = 0.010317 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.474912 B = 2713.346963 C = 3069.433422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.112 4.112 4 C -0.094 4.094 5 C -0.148 4.148 6 C 0.074 3.926 7 H 0.052 0.948 8 O -0.308 6.308 9 C 0.010 3.990 10 C -0.183 4.183 11 C 0.178 3.822 12 H 0.044 0.956 13 N -0.577 5.577 14 C 0.148 3.852 15 C -0.231 4.231 16 H 0.070 0.930 17 C -0.003 4.003 18 N -0.901 5.901 19 Si 0.893 3.107 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.292 1.292 23 H 0.016 0.984 24 H 0.161 0.839 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.023 0.977 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.045 0.955 39 H -0.005 1.005 40 H 0.060 0.940 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 5.031 8.466 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.116 4.116 4 C -0.132 4.132 5 C -0.205 4.205 6 C 0.016 3.984 7 H 0.070 0.930 8 O -0.226 6.226 9 C -0.087 4.087 10 C -0.221 4.221 11 C 0.069 3.931 12 H 0.061 0.939 13 N -0.299 5.299 14 C 0.005 3.995 15 C -0.360 4.360 16 H 0.088 0.912 17 C -0.199 4.199 18 N -0.548 5.548 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.219 1.219 23 H 0.034 0.966 24 H 0.177 0.823 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.013 0.987 40 H 0.078 0.922 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.325 4.863 8.240 10.950 hybrid contribution 0.157 -0.630 -0.349 0.737 sum 5.482 4.233 7.891 10.499 Atomic orbital electron populations 1.22644 0.93184 1.04283 1.00145 1.21121 0.98647 0.93140 0.98633 1.22899 0.92271 0.96919 0.99493 1.21200 0.95600 0.99840 0.96531 1.21774 1.00085 1.01254 0.97403 1.23000 0.84342 0.95615 0.95479 0.92962 1.89228 1.20953 1.70376 1.42019 1.22773 0.97702 0.97684 0.90517 1.23877 1.01623 0.97752 0.98820 1.21230 0.90881 0.91261 0.89697 0.93879 1.43789 1.04838 1.29225 1.52019 1.21333 0.86229 0.89957 1.01949 1.19072 0.92686 1.03170 1.21056 0.91236 1.24636 0.95676 0.99375 1.00256 1.70176 0.97617 1.46667 1.40293 0.86336 0.77183 0.80331 0.83713 1.20706 1.22212 1.21946 0.96562 0.82254 0.96406 0.92431 0.95843 0.91882 0.92657 0.92459 0.93689 0.93226 0.90350 0.95283 0.95305 0.90476 0.90107 0.93697 0.98656 0.92151 0.94146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 6.90 37.16 0.26 -3.24 16 2 C -0.08 -1.65 4.99 -26.73 -0.13 -1.78 16 3 C -0.11 -2.09 0.92 -153.70 -0.14 -2.23 16 4 C -0.09 -1.42 5.32 -26.73 -0.14 -1.56 16 5 C -0.15 -2.01 9.29 37.16 0.35 -1.66 16 6 C 0.07 1.31 3.63 -25.92 -0.09 1.21 16 7 H 0.05 0.83 7.24 -51.93 -0.38 0.46 16 8 O -0.31 -5.98 2.70 -35.23 -0.10 -6.08 16 9 C 0.01 0.15 10.49 101.05 1.06 1.21 16 10 C -0.18 -3.21 6.88 -25.92 -0.18 -3.39 16 11 C 0.18 3.68 4.04 -67.12 -0.27 3.41 16 12 H 0.04 0.90 8.10 -51.93 -0.42 0.48 16 13 N -0.58 -14.05 1.67 -172.55 -0.29 -14.34 16 14 C 0.15 3.63 7.04 59.85 0.42 4.05 16 15 C -0.23 -6.16 6.67 -15.06 -0.10 -6.26 16 16 H 0.07 1.88 7.62 -52.49 -0.40 1.48 16 17 C 0.00 -0.07 5.02 -17.43 -0.09 -0.16 16 18 N -0.90 -25.45 9.93 55.49 0.55 -24.90 16 19 Si 0.89 22.05 29.60 -169.99 -5.03 17.02 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H 0.02 0.35 6.43 -51.93 -0.33 0.02 16 24 H 0.16 3.94 0.69 -51.99 -0.04 3.91 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 1.34 6.80 -51.93 -0.35 0.99 16 27 H 0.02 0.45 6.01 -51.93 -0.31 0.14 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.76 7.32 -51.93 -0.38 0.38 16 30 H 0.06 0.81 6.65 -51.93 -0.35 0.47 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.67 7.40 -51.93 -0.38 0.29 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 1.15 7.61 -51.93 -0.40 0.75 16 37 H 0.08 1.50 5.55 -51.93 -0.29 1.21 16 38 H 0.05 1.17 4.85 -51.93 -0.25 0.92 16 39 H 0.00 -0.11 5.52 -51.93 -0.29 -0.39 16 40 H 0.06 1.64 6.28 -51.92 -0.33 1.31 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 287.65 15.07 4.33 4.33 Total: -1.00 -28.20 287.65 -6.15 -34.35 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.56 Total: 0.00 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 0.93 Total: -10.39 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.26 Total: -39.24 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.10 Total: -6.08 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.20 -6.15 -34.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140663672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.048 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds