Wall clock time and date at job start Sun Mar 29 2020 22:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47193 * 2 1 4 4 C 1.53000 * 112.85099 * 161.58135 * 3 2 1 5 5 C 1.53008 * 109.46906 * 305.35696 * 4 3 2 6 6 C 1.53776 * 113.61168 * 30.27573 * 3 2 1 7 7 H 1.08994 * 113.61574 * 105.47389 * 6 3 2 8 8 O 1.42897 * 113.61641 * 334.65105 * 6 3 2 9 9 C 1.42902 * 114.00216 * 150.00502 * 8 6 3 10 10 C 1.53782 * 87.08313 * 220.02122 * 6 3 2 11 11 C 1.53779 * 113.61126 * 292.78028 * 3 2 1 12 12 H 1.09003 * 113.61252 * 254.60818 * 11 3 2 13 13 N 1.46497 * 113.61912 * 25.43076 * 11 3 2 14 14 C 1.46499 * 119.99951 * 100.53413 * 13 11 3 15 15 C 1.36939 * 119.99844 * 280.53502 * 13 11 3 16 16 H 1.07998 * 120.00201 * 351.56532 * 15 13 11 17 17 C 1.38814 * 119.99868 * 171.27872 * 15 13 11 18 18 N 1.31622 * 119.99945 * 340.46664 * 17 15 13 19 19 Si 1.86794 * 119.99908 * 160.45538 * 17 15 13 20 20 H 1.48505 * 109.47303 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47192 * 120.00386 * 19 17 15 22 22 H 1.48502 * 109.47345 * 240.00805 * 19 17 15 23 23 H 1.08995 * 109.47029 * 276.94718 * 1 2 3 24 24 H 1.09000 * 109.46869 * 36.94636 * 1 2 3 25 25 H 1.08997 * 109.46976 * 156.94642 * 1 2 3 26 26 H 1.09000 * 109.47193 * 240.00131 * 2 1 3 27 27 H 1.09000 * 109.47408 * 119.99894 * 2 1 3 28 28 H 1.08994 * 109.47050 * 65.34906 * 4 3 2 29 29 H 1.08997 * 109.46868 * 185.35417 * 4 3 2 30 30 H 1.08993 * 109.47529 * 67.10721 * 5 4 3 31 31 H 1.09002 * 109.46650 * 187.11209 * 5 4 3 32 32 H 1.09000 * 109.46792 * 307.10305 * 5 4 3 33 33 H 1.09005 * 109.47426 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46600 * 299.99451 * 9 8 6 35 35 H 1.08994 * 109.47663 * 59.99689 * 9 8 6 36 36 H 1.09003 * 113.61088 * 270.88831 * 10 6 3 37 37 H 1.08992 * 113.61918 * 139.98214 * 10 6 3 38 38 H 1.08997 * 109.47477 * 267.88084 * 14 13 11 39 39 H 1.08997 * 109.47097 * 27.88765 * 14 13 11 40 40 H 1.09009 * 109.46666 * 147.88298 * 14 13 11 41 41 H 0.96997 * 119.99337 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.4993 1.5568 0.4455 5 6 3.6687 0.8910 1.8126 6 6 1.0981 2.4289 0.7104 7 1 1.4564 2.7466 1.6895 8 8 -0.2663 2.0045 0.7297 9 6 -1.0012 2.4619 1.8666 10 6 1.4194 3.4251 -0.4162 11 6 1.7310 2.2051 -1.2991 12 1 2.6000 2.3410 -1.9429 13 7 0.5645 1.6888 -2.0195 14 6 -0.7262 2.3732 -1.9097 15 6 0.6806 0.5664 -2.7954 16 1 1.6544 0.1407 -2.9869 17 6 -0.4541 -0.0275 -3.3310 18 7 -1.6365 0.2241 -2.8105 19 14 -0.3027 -1.1834 -4.7905 20 1 1.1244 -1.2987 -5.1848 21 1 -0.8224 -2.5234 -4.4167 22 1 -1.0897 -0.6474 -5.9301 23 1 -0.3633 0.1243 1.0201 24 1 -0.3633 0.8213 -0.6177 25 1 -0.3633 -0.9456 -0.4024 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.1412 1.0605 -0.2823 29 1 3.7761 2.6086 0.5167 30 1 3.5145 -0.1836 1.7152 31 1 4.6746 1.0812 2.1872 32 1 2.9380 1.3013 2.5096 33 1 -2.0268 2.0973 1.8071 34 1 -0.5343 2.0850 2.7766 35 1 -1.0031 3.5517 1.8838 36 1 2.2891 4.0497 -0.2119 37 1 0.5552 3.9979 -0.7522 38 1 -1.3030 1.9328 -1.0964 39 1 -0.5603 3.4311 -1.7062 40 1 -1.2755 2.2648 -2.8449 41 1 -2.4293 -0.1912 -3.1845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140663672.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:07 Heat of formation + Delta-G solvation = 35.921270 kcal Electronic energy + Delta-G solvation = -20124.721074 eV Core-core repulsion = 17429.171911 eV Total energy + Delta-G solvation = -2695.549163 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78972 -37.35852 -36.29485 -33.77352 -32.38678 -31.50360 -28.27142 -27.42954 -26.05911 -25.55116 -23.98526 -23.13545 -21.66444 -19.13350 -18.49705 -17.64237 -16.80206 -16.52930 -15.67300 -15.58680 -15.23418 -14.98839 -14.84517 -14.50302 -13.94675 -13.72041 -13.28453 -13.03849 -12.91231 -12.66309 -12.50217 -12.47180 -12.27713 -12.09955 -11.88865 -11.78482 -11.67740 -11.58880 -11.18233 -10.84520 -10.63625 -10.46921 -10.12771 -9.54244 -8.54821 -7.67107 -4.96660 1.46255 1.49650 1.56973 2.59027 3.07197 3.42397 3.70776 3.89295 3.97584 4.12430 4.31037 4.35759 4.46303 4.57351 4.66298 4.70827 4.79259 4.85965 4.93981 4.95372 4.98468 5.09158 5.15461 5.17876 5.24983 5.31660 5.35395 5.44892 5.62778 5.69234 5.75450 5.80473 5.83841 5.90684 6.07561 6.45212 6.64464 6.97640 7.32455 8.07974 8.46923 9.35367 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026322 B = 0.010317 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.474912 B = 2713.346963 C = 3069.433422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.106 4.106 4 C -0.089 4.089 5 C -0.144 4.144 6 C 0.075 3.925 7 H 0.082 0.918 8 O -0.344 6.344 9 C 0.008 3.992 10 C -0.166 4.166 11 C 0.153 3.847 12 H 0.041 0.959 13 N -0.587 5.587 14 C 0.167 3.833 15 C -0.224 4.224 16 H 0.062 0.938 17 C -0.051 4.051 18 N -0.922 5.922 19 Si 0.943 3.057 20 H -0.274 1.274 21 H -0.303 1.303 22 H -0.295 1.295 23 H 0.024 0.976 24 H 0.157 0.843 25 H -0.029 1.029 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.019 0.981 40 H 0.026 0.974 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.471 6.601 10.106 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.109 4.109 4 C -0.127 4.127 5 C -0.201 4.201 6 C 0.017 3.983 7 H 0.100 0.900 8 O -0.262 6.262 9 C -0.088 4.088 10 C -0.203 4.203 11 C 0.045 3.955 12 H 0.059 0.941 13 N -0.309 5.309 14 C 0.024 3.976 15 C -0.354 4.354 16 H 0.080 0.920 17 C -0.245 4.245 18 N -0.571 5.571 19 Si 0.775 3.225 20 H -0.199 1.199 21 H -0.231 1.231 22 H -0.222 1.222 23 H 0.043 0.957 24 H 0.174 0.826 25 H -0.010 1.010 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.037 0.963 40 H 0.044 0.956 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 7.235 6.447 9.892 13.848 hybrid contribution -0.382 -1.097 -0.811 1.416 sum 6.853 5.350 9.081 12.572 Atomic orbital electron populations 1.22634 0.95133 1.01660 1.00185 1.21025 0.96798 0.95376 0.97895 1.22866 0.94931 0.94726 0.98415 1.21200 0.92608 1.01641 0.97274 1.21736 1.01805 1.00191 0.96407 1.23051 0.83503 0.94818 0.96901 0.89975 1.89081 1.22027 1.71409 1.43727 1.22890 0.97230 0.98893 0.89806 1.23840 1.02622 0.96656 0.97194 1.21550 0.89490 0.93914 0.90544 0.94082 1.43859 1.05856 1.28493 1.52673 1.21007 0.86035 0.91096 0.99491 1.19164 0.92082 1.03399 1.20746 0.91995 1.25175 0.95761 1.01287 1.02304 1.70312 0.97745 1.47892 1.41143 0.85535 0.77200 0.78438 0.81371 1.19904 1.23085 1.22216 0.95667 0.82640 1.00983 0.95481 0.94211 0.92332 0.90169 0.93765 0.91140 0.92835 0.90770 0.93631 0.93436 0.86766 0.91126 0.95208 0.96328 0.95551 0.94987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.79 6.90 71.98 0.50 -6.29 16 2 C -0.07 -3.08 4.99 30.60 0.15 -2.93 16 3 C -0.11 -3.70 0.92 -51.66 -0.05 -3.75 16 4 C -0.09 -2.37 5.32 30.60 0.16 -2.21 16 5 C -0.14 -3.33 9.29 71.98 0.67 -2.67 16 6 C 0.08 2.41 3.63 31.12 0.11 2.52 16 7 H 0.08 2.17 7.24 -2.39 -0.02 2.15 16 8 O -0.34 -12.76 2.70 -148.98 -0.40 -13.16 16 9 C 0.01 0.23 10.49 113.37 1.19 1.42 16 10 C -0.17 -5.21 6.88 31.12 0.21 -4.99 16 11 C 0.15 6.03 4.04 45.52 0.18 6.22 16 12 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 13 N -0.59 -28.64 1.67 -699.83 -1.17 -29.81 16 14 C 0.17 8.25 7.04 127.77 0.90 9.15 16 15 C -0.22 -12.18 6.67 84.03 0.56 -11.62 16 16 H 0.06 3.41 7.62 -2.91 -0.02 3.39 16 17 C -0.05 -2.87 5.02 84.86 0.43 -2.44 16 18 N -0.92 -54.01 9.93 21.65 0.22 -53.79 16 19 Si 0.94 46.56 29.60 68.60 2.03 48.59 16 20 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 22 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 23 H 0.02 1.12 6.43 -2.39 -0.02 1.10 16 24 H 0.16 7.81 0.69 -3.35 0.00 7.80 16 25 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 26 H 0.03 1.27 6.80 -2.39 -0.02 1.25 16 27 H 0.04 1.51 6.01 -2.39 -0.01 1.49 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.77 7.32 -2.39 -0.02 1.75 16 30 H 0.04 1.13 6.65 -2.39 -0.02 1.11 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.20 7.40 -2.39 -0.02 1.19 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 2.76 7.61 -2.39 -0.02 2.74 16 37 H 0.07 2.39 5.55 -2.39 -0.01 2.38 16 38 H 0.03 1.58 4.85 -2.39 -0.01 1.57 16 39 H 0.02 0.81 5.52 -2.39 -0.01 0.80 16 40 H 0.03 1.45 6.28 -2.38 -0.01 1.44 16 41 H 0.24 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -62.56 287.65 6.70 -55.86 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.00 Total: 9.91 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 5.02 Total: -17.60 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -0.95 Total: -83.60 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.40 Total: -13.16 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -62.56 6.70 -55.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140663672.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.784 kcal (2) G-P(sol) polarization free energy of solvation -62.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds