Wall clock time and date at job start Sun Mar 29 2020 22:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46854 * 2 1 4 4 C 1.52995 * 109.47358 * 239.99723 * 2 1 3 5 5 O 1.42907 * 109.47096 * 119.99537 * 2 1 3 6 6 C 1.42895 * 113.99534 * 63.05840 * 5 2 1 7 7 C 1.53129 * 109.51825 * 231.28608 * 6 5 2 8 8 C 1.53041 * 109.27680 * 182.37855 * 7 6 5 9 9 N 1.46846 * 109.52081 * 59.17905 * 8 7 6 10 10 C 1.46904 * 110.99775 * 174.15971 * 9 8 7 11 11 C 1.50695 * 109.47156 * 66.26231 * 10 9 8 12 12 H 1.08002 * 119.99739 * 355.31421 * 11 10 9 13 13 C 1.37875 * 120.00215 * 175.59741 * 11 10 9 14 14 N 1.31511 * 120.00501 * 179.72526 * 13 11 10 15 15 Si 1.86797 * 119.99868 * 359.72016 * 13 11 10 16 16 H 1.48500 * 109.47149 * 90.00268 * 15 13 11 17 17 H 1.48498 * 109.47334 * 210.00620 * 15 13 11 18 18 H 1.48502 * 109.47037 * 330.00395 * 15 13 11 19 19 C 1.46841 * 111.19919 * 298.25662 * 9 8 7 20 20 C 1.53031 * 109.52546 * 61.74557 * 19 9 8 21 21 H 1.09001 * 109.47338 * 299.99616 * 1 2 3 22 22 H 1.08996 * 109.46892 * 60.00278 * 1 2 3 23 23 H 1.09008 * 109.46730 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47435 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46886 * 299.99622 * 3 2 1 26 26 H 1.08997 * 109.47551 * 60.00149 * 3 2 1 27 27 H 1.08997 * 109.47333 * 305.52957 * 4 2 1 28 28 H 1.09000 * 109.47132 * 65.53290 * 4 2 1 29 29 H 1.09005 * 109.47112 * 185.52696 * 4 2 1 30 30 H 1.08995 * 109.52637 * 351.40861 * 6 5 2 31 31 H 1.08999 * 109.50256 * 62.43837 * 7 6 5 32 32 H 1.08994 * 109.50289 * 302.31918 * 7 6 5 33 33 H 1.09001 * 109.46168 * 299.16264 * 8 7 6 34 34 H 1.08998 * 109.44872 * 179.19077 * 8 7 6 35 35 H 1.09004 * 109.47076 * 306.26153 * 10 9 8 36 36 H 1.08998 * 109.47147 * 186.26495 * 10 9 8 37 37 H 0.96998 * 120.00535 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.46133 * 181.76079 * 19 9 8 39 39 H 1.09001 * 109.46681 * 301.72525 * 19 9 8 40 40 H 1.09002 * 109.50495 * 180.87351 * 20 19 9 41 41 H 1.09005 * 109.50164 * 60.75912 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.6424 -2.0539 1.2303 7 6 0.9972 -2.3511 2.5869 8 6 0.6638 -3.8423 2.6720 9 7 1.8927 -4.6299 2.5111 10 6 1.6333 -6.0599 2.7250 11 6 0.7358 -6.5768 1.6303 12 1 0.3313 -5.8951 0.8967 13 6 0.4265 -7.9190 1.5685 14 7 -0.3610 -8.3693 0.6164 15 14 1.1262 -9.0980 2.8373 16 1 0.1969 -9.1913 3.9919 17 1 1.2928 -10.4411 2.2262 18 1 2.4452 -8.5989 3.3025 19 6 2.5046 -4.3968 1.1968 20 6 2.8930 -2.9223 1.0676 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8901 26 1 1.6766 1.9564 0.8899 27 1 1.5982 -1.7164 -1.3000 28 1 1.7599 -0.1535 -2.1364 29 1 3.1256 -0.8078 -1.2010 30 1 0.9349 -2.2812 0.4330 31 1 0.0827 -1.7672 2.6906 32 1 1.6907 -2.0872 3.3853 33 1 -0.0404 -4.1026 1.8818 34 1 0.2174 -4.0596 3.6423 35 1 1.1469 -6.2006 3.6903 36 1 2.5762 -6.6065 2.7102 37 1 -0.5783 -9.3136 0.5727 38 1 3.3951 -5.0172 1.0956 39 1 1.7918 -4.6546 0.4134 40 1 3.3330 -2.7464 0.0860 41 1 3.6164 -2.6673 1.8422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141441144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:15 Heat of formation + Delta-G solvation = -59.954734 kcal Electronic energy + Delta-G solvation = -18531.940913 eV Core-core repulsion = 15832.234255 eV Total energy + Delta-G solvation = -2699.706658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50626 -37.49587 -33.93953 -32.57869 -31.11165 -30.30743 -27.63311 -27.35406 -26.83384 -23.45662 -22.44503 -21.06427 -19.80525 -19.18004 -16.86007 -16.44136 -15.61963 -14.88671 -14.54393 -14.24772 -14.06912 -13.57990 -13.50274 -13.01867 -12.79429 -12.45557 -12.31748 -12.13486 -12.00159 -11.82317 -11.76813 -11.55597 -11.22842 -11.11374 -10.96790 -10.61708 -10.47978 -10.22375 -10.10754 -9.92590 -9.84123 -9.49176 -9.11256 -8.61066 -7.18956 -6.12079 -4.11979 3.27251 3.34852 3.38914 3.79478 4.38708 4.82345 4.82731 4.93295 5.02046 5.21173 5.26221 5.31504 5.46832 5.50459 5.54891 5.57391 5.67470 5.78014 5.78510 5.83098 5.98937 6.05571 6.11960 6.20771 6.22866 6.24020 6.37744 6.42819 6.49568 6.59675 6.76446 6.86834 6.97976 7.07824 7.55420 7.56604 8.06332 8.13523 8.43436 8.89652 9.51032 11.00840 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042916 B = 0.005397 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.281254 B = 5186.573728 C = 5323.242570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.106 3.894 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.373 6.373 6 C 0.089 3.911 7 C -0.118 4.118 8 C 0.063 3.937 9 N -0.535 5.535 10 C 0.152 3.848 11 C -0.551 4.551 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.900 5.900 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.263 1.263 19 C 0.065 3.935 20 C -0.126 4.126 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.059 0.941 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 15.807 -1.114 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.066 3.934 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.293 6.293 6 C 0.032 3.968 7 C -0.156 4.156 8 C -0.065 4.065 9 N -0.258 5.258 10 C 0.025 3.975 11 C -0.589 4.589 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.706 3.294 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.187 1.187 19 C -0.063 4.063 20 C -0.165 4.165 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.070 15.886 -0.683 16.413 hybrid contribution -0.568 -1.267 -0.313 1.424 sum 3.502 14.619 -0.995 15.065 Atomic orbital electron populations 1.22463 0.95962 1.02781 1.02331 1.21465 0.92940 0.92972 0.85975 1.21739 1.01776 0.93707 1.02062 1.22518 1.02194 1.01238 0.97689 1.87972 1.76727 1.22882 1.41706 1.22173 0.96217 0.80594 0.97822 1.21842 1.00080 0.96650 0.97002 1.21861 0.92436 0.90946 1.01283 1.62384 1.25185 1.09435 1.28839 1.20207 0.96397 0.84351 0.96566 1.21695 1.29828 0.94301 1.13106 0.90833 1.24970 0.94412 0.98326 0.95347 1.69924 1.36166 1.14895 1.32848 0.86797 0.80414 0.80377 0.81845 1.20192 1.21315 1.18720 1.21832 0.99269 0.93509 0.91709 1.22029 0.97720 0.95322 1.01386 0.91878 0.91898 0.91940 0.91983 0.91547 0.92004 0.91881 0.91938 0.91714 0.91940 0.92201 0.91066 0.94091 0.91358 0.95792 0.95059 0.92688 0.91393 0.93778 0.92232 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.42 37.16 0.31 -1.69 16 2 C 0.11 1.27 1.11 -90.62 -0.10 1.17 16 3 C -0.14 -1.34 8.84 37.16 0.33 -1.01 16 4 C -0.18 -2.04 7.59 37.15 0.28 -1.76 16 5 O -0.37 -5.52 9.64 -35.23 -0.34 -5.86 16 6 C 0.09 1.40 1.60 -26.60 -0.04 1.36 16 7 C -0.12 -1.92 5.75 -26.64 -0.15 -2.07 16 8 C 0.06 1.23 5.14 -3.83 -0.02 1.21 16 9 N -0.53 -11.29 4.86 -236.12 -1.15 -12.44 16 10 C 0.15 3.66 4.22 -4.98 -0.02 3.64 16 11 C -0.55 -15.25 8.28 -34.44 -0.29 -15.53 16 12 H 0.07 2.21 6.10 -52.49 -0.32 1.89 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 15 Si 0.88 21.37 27.56 -169.99 -4.68 16.68 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.26 -6.16 6.41 56.52 0.36 -5.80 16 19 C 0.07 1.29 5.01 -3.84 -0.02 1.27 16 20 C -0.13 -2.07 5.69 -26.65 -0.15 -2.22 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.78 6.52 -51.92 -0.34 0.44 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.79 6.74 -51.93 -0.35 0.44 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.74 7.97 -51.93 -0.41 0.33 16 30 H 0.06 1.00 4.97 -51.93 -0.26 0.75 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.88 6.95 -51.93 -0.36 0.52 16 34 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 35 H 0.02 0.58 7.71 -51.93 -0.40 0.18 16 36 H 0.03 0.77 6.88 -51.93 -0.36 0.41 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 1.34 8.12 -51.93 -0.42 0.91 16 39 H 0.04 0.96 6.65 -51.93 -0.35 0.62 16 40 H 0.06 0.89 7.39 -51.93 -0.38 0.51 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -29.58 309.40 -8.05 -37.63 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.35 Total: -0.48 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 0.03 Total: -13.69 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.37 Total: -38.95 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.34 Total: -5.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.68 Total: 16.68 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.58 -8.05 -37.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141441144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.323 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds