Wall clock time and date at job start Sun Mar 29 2020 23:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46926 * 2 1 4 4 H 1.09005 * 109.46877 * 54.48886 * 3 2 1 5 5 C 1.50704 * 109.47377 * 174.48924 * 3 2 1 6 6 H 1.07996 * 119.99880 * 120.00060 * 5 3 2 7 7 C 1.37880 * 120.00001 * 300.00337 * 5 3 2 8 8 N 1.31520 * 119.99508 * 359.97438 * 7 5 3 9 9 Si 1.86789 * 119.99878 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47381 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47003 * 119.99821 * 9 7 5 12 12 H 1.48496 * 109.47106 * 239.99816 * 9 7 5 13 13 N 1.46897 * 109.47425 * 294.49289 * 3 2 1 14 14 C 1.46898 * 111.00384 * 152.95217 * 13 3 2 15 15 C 1.52998 * 109.46938 * 273.64422 * 14 13 3 16 16 C 1.52999 * 109.46946 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47250 * 60.00044 * 16 15 14 18 18 O 1.42901 * 109.47181 * 180.02562 * 17 16 15 19 19 C 1.42906 * 113.99961 * 270.00303 * 18 17 16 20 20 C 1.52998 * 109.47110 * 299.99855 * 17 16 15 21 21 C 1.52994 * 109.46967 * 60.00308 * 20 17 16 22 22 H 1.08994 * 109.47454 * 60.73409 * 1 2 3 23 23 H 1.08997 * 109.47269 * 300.72885 * 1 2 3 24 24 H 1.09002 * 109.46420 * 180.72955 * 1 2 3 25 25 H 1.09002 * 109.47314 * 119.99950 * 2 1 3 26 26 H 1.09000 * 109.47471 * 240.00259 * 2 1 3 27 27 H 0.97002 * 119.99119 * 180.02562 * 8 7 5 28 28 H 1.00905 * 111.00205 * 28.99667 * 13 3 2 29 29 H 1.08999 * 109.47176 * 33.64718 * 14 13 3 30 30 H 1.09004 * 109.47386 * 299.99673 * 15 14 13 31 31 H 1.08999 * 109.47275 * 60.00121 * 15 14 13 32 32 H 1.08998 * 109.47373 * 299.99782 * 16 15 14 33 33 H 1.09004 * 109.47057 * 180.02562 * 16 15 14 34 34 H 1.08996 * 109.47523 * 60.00472 * 17 16 15 35 35 H 1.09000 * 109.46922 * 179.97438 * 19 18 17 36 36 H 1.09001 * 109.46497 * 299.99321 * 19 18 17 37 37 H 1.08992 * 109.47155 * 59.99917 * 19 18 17 38 38 H 1.08999 * 109.47429 * 299.99903 * 20 17 16 39 39 H 1.09008 * 109.47051 * 179.97438 * 20 17 16 40 40 H 1.09005 * 109.47322 * 180.02562 * 21 20 17 41 41 H 1.08999 * 109.47377 * 59.99563 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9840 0.8366 5 6 3.5408 1.4448 0.1364 6 1 4.1525 1.8871 -0.6359 7 6 4.1329 0.8822 1.2473 8 7 3.3878 0.3439 2.1879 9 14 5.9932 0.8844 1.4160 10 1 6.5970 1.5451 0.2311 11 1 6.3778 1.6237 2.6451 12 1 6.4837 -0.5143 1.5058 13 7 1.6618 2.0956 -1.2603 14 6 1.5342 3.5482 -1.0830 15 6 0.1211 3.8808 -0.5999 16 6 -0.0120 5.3938 -0.4158 17 6 0.2490 6.0949 -1.7504 18 8 0.1252 7.5081 -1.5783 19 6 -1.1961 8.0068 -1.7968 20 6 1.6621 5.7623 -2.2335 21 6 1.7952 4.2494 -2.4176 22 1 -0.3634 0.5023 -0.8964 23 1 -0.3633 0.5251 0.8833 24 1 -0.3632 -1.0276 0.0131 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.8044 -0.0516 2.9696 28 1 0.8107 1.7004 -1.6312 29 1 2.2602 3.8893 -0.3449 30 1 -0.6049 3.5398 -1.3381 31 1 -0.0650 3.3810 0.3507 32 1 0.7139 5.7353 0.3220 33 1 -1.0186 5.6307 -0.0713 34 1 -0.4770 5.7536 -2.4883 35 1 -1.2064 9.0863 -1.6465 36 1 -1.5064 7.7786 -2.8165 37 1 -1.8830 7.5358 -1.0938 38 1 2.3881 6.1038 -1.4956 39 1 1.8479 6.2615 -3.1846 40 1 2.8021 4.0123 -2.7613 41 1 1.0692 3.9079 -3.1555 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164257322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:20 Heat of formation + Delta-G solvation = -71.649249 kcal Electronic energy + Delta-G solvation = -18358.344700 eV Core-core repulsion = 15658.130930 eV Total energy + Delta-G solvation = -2700.213770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17184 -37.10048 -35.01286 -32.12704 -30.91895 -30.50244 -28.01688 -26.55381 -25.43227 -22.81945 -22.35104 -21.14424 -19.82578 -19.25798 -16.53835 -16.16978 -15.75240 -15.08639 -14.88682 -14.47302 -13.90676 -13.73282 -13.11678 -13.06086 -12.65781 -12.60969 -12.23750 -11.96690 -11.74352 -11.64487 -11.17920 -10.87873 -10.84615 -10.78387 -10.69515 -10.58349 -10.34680 -10.05774 -9.92334 -9.65210 -9.45976 -9.30492 -9.00985 -8.31726 -7.14715 -5.93369 -3.96969 3.33747 3.41752 3.47240 3.78033 4.48150 4.88928 4.95228 5.14598 5.22115 5.27665 5.35373 5.41468 5.50850 5.52182 5.62966 5.75883 5.77266 5.83648 6.12498 6.16261 6.18181 6.21931 6.27127 6.33763 6.40961 6.42750 6.51664 6.78162 6.84559 6.86398 7.12255 7.21684 7.26405 7.55551 7.81556 7.97003 8.37051 8.44966 8.81821 9.11873 9.68116 11.11970 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026649 B = 0.006098 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.439231 B = 4590.506641 C = 5141.864563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.093 3.907 15 C -0.143 4.143 16 C -0.134 4.134 17 C 0.091 3.909 18 O -0.389 6.389 19 C 0.032 3.968 20 C -0.114 4.114 21 C -0.101 4.101 22 H 0.035 0.965 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.099 0.901 26 H 0.040 0.960 27 H 0.258 0.742 28 H 0.316 0.684 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 9.233 -6.869 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.312 5.312 14 C -0.018 4.018 15 C -0.183 4.183 16 C -0.173 4.173 17 C 0.033 3.967 18 O -0.308 6.308 19 C -0.065 4.065 20 C -0.152 4.152 21 C -0.140 4.140 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.785 9.264 -6.876 13.918 hybrid contribution -0.257 -0.155 0.710 0.771 sum -8.042 9.109 -6.166 13.626 Atomic orbital electron populations 1.21879 0.99686 0.99504 0.99592 1.21787 0.91163 1.00596 1.03021 1.19166 0.95341 0.89812 0.84567 0.97907 1.21278 0.91359 1.36064 1.04160 0.92030 1.24960 0.98027 0.95742 0.95899 1.69888 1.34531 1.39754 1.09596 0.86514 0.85949 0.77540 0.77844 1.19778 1.21282 1.21206 1.60778 1.36928 1.01365 1.32092 1.21505 0.94210 0.90009 0.96078 1.22269 0.99553 0.94786 1.01684 1.21952 1.01462 0.95968 0.97872 1.22229 0.98111 0.80037 0.96276 1.87909 1.28641 1.22823 1.91382 1.22730 0.84833 0.99626 0.99296 1.21601 0.95244 0.97010 1.01348 1.21483 1.02441 0.92089 0.97960 0.94642 0.93945 0.94497 0.88297 0.94135 0.93227 0.86629 0.89961 0.92705 0.91629 0.91050 0.92696 0.92568 0.90032 0.94345 0.94274 0.91068 0.91841 0.90725 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.74 37.16 0.36 -2.50 16 2 C -0.13 -2.98 5.35 -26.73 -0.14 -3.12 16 3 C 0.22 5.35 1.82 -68.87 -0.13 5.23 16 4 H 0.00 0.09 7.22 -51.93 -0.37 -0.29 16 5 C -0.49 -13.46 8.61 -34.44 -0.30 -13.76 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.55 11.29 55.43 0.63 -24.93 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -14.12 6.05 -100.95 -0.61 -14.73 16 14 C 0.09 1.69 2.27 -67.71 -0.15 1.54 16 15 C -0.14 -2.28 5.16 -26.73 -0.14 -2.42 16 16 C -0.13 -1.92 5.54 -26.73 -0.15 -2.07 16 17 C 0.09 1.22 2.61 -26.73 -0.07 1.15 16 18 O -0.39 -5.31 10.35 -35.23 -0.36 -5.68 16 19 C 0.03 0.32 10.82 101.05 1.09 1.41 16 20 C -0.11 -1.60 5.57 -26.74 -0.15 -1.74 16 21 C -0.10 -1.57 5.53 -26.73 -0.15 -1.72 16 22 H 0.03 0.61 6.48 -51.93 -0.34 0.27 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.32 6.02 6.22 -39.29 -0.24 5.77 16 29 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 30 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.07 1.15 7.56 -51.93 -0.39 0.76 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 37 H 0.04 0.37 7.87 -51.93 -0.41 -0.04 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -28.33 317.11 -8.07 -36.40 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.47 Total: 4.18 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.01 Total: -16.61 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.01 Total: -39.66 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.36 Total: -5.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.33 -8.07 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164257322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.246 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds