Wall clock time and date at job start Sun Mar 29 2020 23:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.47116 * 304.00058 * 3 2 1 5 5 C 1.50702 * 109.47000 * 184.00237 * 3 2 1 6 6 H 1.07998 * 120.00163 * 239.99836 * 5 3 2 7 7 C 1.37884 * 119.99793 * 59.99897 * 5 3 2 8 8 N 1.31513 * 120.00252 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47428 * 60.00045 * 9 7 5 11 11 H 1.48498 * 109.47035 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47146 * 299.99828 * 9 7 5 13 13 N 1.46900 * 109.47242 * 64.00407 * 3 2 1 14 14 C 1.46900 * 110.99940 * 203.92540 * 13 3 2 15 15 C 1.52997 * 109.47650 * 85.44429 * 14 13 3 16 16 C 1.52993 * 109.47297 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47294 * 300.00107 * 16 15 14 18 18 O 1.42907 * 109.47213 * 180.02562 * 17 16 15 19 19 C 1.42895 * 113.99805 * 149.99966 * 18 17 16 20 20 C 1.52997 * 109.47036 * 59.99733 * 17 16 15 21 21 C 1.52993 * 109.47297 * 300.00265 * 20 17 16 22 22 H 1.09002 * 109.47228 * 174.92607 * 1 2 3 23 23 H 1.08997 * 109.47421 * 294.92337 * 1 2 3 24 24 H 1.09002 * 109.47073 * 54.92804 * 1 2 3 25 25 H 1.09002 * 109.47214 * 239.99939 * 2 1 3 26 26 H 1.08998 * 109.46671 * 120.00046 * 2 1 3 27 27 H 0.96993 * 120.00096 * 180.02562 * 8 7 5 28 28 H 1.00893 * 111.00400 * 79.96703 * 13 3 2 29 29 H 1.08999 * 109.47006 * 325.44230 * 14 13 3 30 30 H 1.08999 * 109.47079 * 59.99845 * 15 14 13 31 31 H 1.09006 * 109.47204 * 300.00344 * 15 14 13 32 32 H 1.09007 * 109.46966 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.47347 * 60.00387 * 16 15 14 34 34 H 1.08999 * 109.46888 * 299.99981 * 17 16 15 35 35 H 1.09005 * 109.47066 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.47441 * 299.99769 * 19 18 17 37 37 H 1.08999 * 109.47411 * 59.99662 * 19 18 17 38 38 H 1.09008 * 109.46852 * 60.00382 * 20 17 16 39 39 H 1.09006 * 109.47204 * 179.97438 * 20 17 16 40 40 H 1.09007 * 109.46966 * 180.02562 * 21 20 17 41 41 H 1.08995 * 109.47347 * 299.99613 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 -0.8520 5 6 3.5437 1.4437 -0.0992 6 1 4.1362 1.8928 0.6842 7 6 4.1631 0.8714 -1.1900 8 7 3.4416 0.3249 -2.1442 9 14 6.0271 0.8722 -1.3126 10 1 6.5998 0.1441 -0.1520 11 1 6.4406 0.2016 -2.5713 12 1 6.5226 2.2721 -1.3123 13 7 1.6309 2.1065 1.2448 14 6 1.5795 3.5644 1.0716 15 6 0.2170 3.9626 0.5009 16 6 0.1634 5.4810 0.3210 17 6 0.3679 6.1625 1.6754 18 8 0.3173 7.5808 1.5075 19 6 -0.1733 8.2842 2.6505 20 6 1.7305 5.7643 2.2462 21 6 1.7841 4.2459 2.4260 22 1 -0.3634 -1.0236 -0.0909 23 1 -0.3634 0.4330 0.9319 24 1 -0.3633 0.5905 -0.8411 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8773 -0.0780 -2.9114 28 1 2.2420 1.8543 2.0070 29 1 2.3664 3.8765 0.3849 30 1 -0.5698 3.6504 1.1875 31 1 0.0711 3.4767 -0.4639 32 1 -0.8072 5.7646 -0.0860 33 1 0.9502 5.7936 -0.3655 34 1 -0.4189 5.8500 2.3619 35 1 -0.1813 9.3543 2.4428 36 1 -1.1865 7.9506 2.8753 37 1 0.4729 8.0843 3.5052 38 1 2.5174 6.0769 1.5596 39 1 1.8764 6.2502 3.2109 40 1 2.7547 3.9623 2.8330 41 1 0.9973 3.9334 3.1125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164257445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:22 Heat of formation + Delta-G solvation = -75.155498 kcal Electronic energy + Delta-G solvation = -18347.863247 eV Core-core repulsion = 15647.497434 eV Total energy + Delta-G solvation = -2700.365813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.11718 -36.99448 -34.92621 -32.08491 -30.98214 -30.46203 -28.08180 -26.48893 -25.28989 -22.80788 -22.37426 -21.09364 -19.45355 -19.25379 -16.58024 -16.48054 -15.58867 -15.08297 -14.88208 -14.52174 -13.79386 -13.60373 -13.27548 -12.97273 -12.67952 -12.52394 -12.06055 -11.84333 -11.64970 -11.31319 -11.19669 -11.09384 -10.80748 -10.70215 -10.68455 -10.61327 -10.35315 -10.05277 -9.94382 -9.55684 -9.39573 -9.26318 -8.99397 -8.34735 -7.21713 -5.97354 -4.10318 3.29007 3.34305 3.36628 3.79794 4.40953 4.91296 4.96636 5.13163 5.22440 5.27647 5.28712 5.42617 5.54053 5.56032 5.71555 5.80317 5.82453 5.85951 6.12011 6.20408 6.30613 6.39515 6.41924 6.49686 6.52817 6.60742 6.73830 6.78350 6.93387 7.16657 7.20018 7.28350 7.48508 7.63182 7.80182 8.11944 8.20376 8.37779 8.71105 9.02949 9.57250 11.02520 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026172 B = 0.006157 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.572344 B = 4546.217040 C = 5142.097406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.686 5.686 14 C 0.091 3.909 15 C -0.100 4.100 16 C -0.114 4.114 17 C 0.091 3.909 18 O -0.389 6.389 19 C 0.032 3.968 20 C -0.135 4.135 21 C -0.116 4.116 22 H 0.023 0.977 23 H 0.046 0.954 24 H 0.036 0.964 25 H 0.089 0.911 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.327 0.673 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 9.716 7.900 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.020 4.020 15 C -0.138 4.138 16 C -0.152 4.152 17 C 0.034 3.966 18 O -0.308 6.308 19 C -0.065 4.065 20 C -0.174 4.174 21 C -0.154 4.154 22 H 0.042 0.958 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.032 9.605 7.418 14.026 hybrid contribution 2.033 0.105 0.127 2.040 sum -4.998 9.710 7.545 13.274 Atomic orbital electron populations 1.21683 0.99022 0.98170 1.00358 1.21499 0.92055 0.99373 1.01590 1.19170 0.92440 0.91025 0.86604 0.94884 1.21844 0.92816 1.37898 1.05858 0.93039 1.24922 0.97848 0.95034 0.95650 1.69862 1.34942 1.37958 1.09574 0.86742 0.86246 0.78155 0.77338 1.20331 1.21241 1.20438 1.60917 1.56557 1.04890 1.09202 1.21336 0.96089 0.89759 0.94769 1.21464 0.98069 0.92510 1.01776 1.21604 1.02179 0.95743 0.95712 1.22225 0.96608 0.79902 0.97875 1.87911 1.86089 1.19114 1.37684 1.22729 0.97495 0.97169 0.89090 1.21975 0.98037 0.96647 1.00727 1.21662 1.01667 0.93622 0.98413 0.95798 0.93474 0.94484 0.89271 0.95205 0.92861 0.85665 0.93286 0.92074 0.91311 0.91842 0.91270 0.92406 0.90072 0.94314 0.94294 0.91182 0.92501 0.92014 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.73 37.16 0.36 -2.41 16 2 C -0.11 -2.54 5.44 -26.73 -0.15 -2.69 16 3 C 0.22 5.25 1.80 -68.86 -0.12 5.12 16 4 H 0.03 0.90 7.15 -51.93 -0.37 0.53 16 5 C -0.54 -14.58 8.21 -34.44 -0.28 -14.86 16 6 H 0.05 1.37 7.76 -52.49 -0.41 0.96 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.98 11.30 55.43 0.63 -24.35 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -14.01 5.55 -100.96 -0.56 -14.58 16 14 C 0.09 1.66 2.30 -67.72 -0.16 1.50 16 15 C -0.10 -1.66 5.41 -26.74 -0.14 -1.80 16 16 C -0.11 -1.69 5.57 -26.74 -0.15 -1.83 16 17 C 0.09 1.24 2.61 -26.73 -0.07 1.17 16 18 O -0.39 -5.36 10.35 -35.23 -0.36 -5.73 16 19 C 0.03 0.32 10.82 101.05 1.09 1.41 16 20 C -0.14 -1.87 5.54 -26.74 -0.15 -2.02 16 21 C -0.12 -1.74 5.19 -26.74 -0.14 -1.88 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.33 6.64 8.06 -39.30 -0.32 6.32 16 29 H 0.05 1.04 7.59 -51.93 -0.39 0.65 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.26 7.45 -51.93 -0.39 0.88 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 38 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 39 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 40 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -27.61 319.15 -8.11 -35.71 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.60 Total: 4.50 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 0.00 Total: -16.52 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.07 Total: -38.93 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.36 Total: -5.73 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.61 -8.11 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164257445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.441 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds