Wall clock time and date at job start Sun Mar 29 2020 23:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46943 * 2 1 4 4 H 1.09000 * 109.47116 * 304.00058 * 3 2 1 5 5 C 1.50702 * 109.47000 * 184.00237 * 3 2 1 6 6 H 1.07998 * 120.00163 * 239.99836 * 5 3 2 7 7 C 1.37884 * 119.99793 * 59.99897 * 5 3 2 8 8 N 1.31513 * 120.00252 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99735 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47428 * 60.00045 * 9 7 5 11 11 H 1.48498 * 109.47035 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47146 * 299.99828 * 9 7 5 13 13 N 1.46900 * 109.47242 * 64.00407 * 3 2 1 14 14 C 1.46900 * 110.99940 * 203.92540 * 13 3 2 15 15 C 1.52997 * 109.47650 * 85.44429 * 14 13 3 16 16 C 1.52993 * 109.47297 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47294 * 300.00107 * 16 15 14 18 18 O 1.42907 * 109.47213 * 180.02562 * 17 16 15 19 19 C 1.42895 * 113.99805 * 149.99966 * 18 17 16 20 20 C 1.52997 * 109.47036 * 59.99733 * 17 16 15 21 21 C 1.52993 * 109.47297 * 300.00265 * 20 17 16 22 22 H 1.09002 * 109.47228 * 174.92607 * 1 2 3 23 23 H 1.08997 * 109.47421 * 294.92337 * 1 2 3 24 24 H 1.09002 * 109.47073 * 54.92804 * 1 2 3 25 25 H 1.09002 * 109.47214 * 239.99939 * 2 1 3 26 26 H 1.08998 * 109.46671 * 120.00046 * 2 1 3 27 27 H 0.96993 * 120.00096 * 180.02562 * 8 7 5 28 28 H 1.00893 * 111.00400 * 79.96703 * 13 3 2 29 29 H 1.08999 * 109.47006 * 325.44230 * 14 13 3 30 30 H 1.08999 * 109.47079 * 59.99845 * 15 14 13 31 31 H 1.09006 * 109.47204 * 300.00344 * 15 14 13 32 32 H 1.09007 * 109.46966 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.47347 * 60.00387 * 16 15 14 34 34 H 1.08999 * 109.46888 * 299.99981 * 17 16 15 35 35 H 1.09005 * 109.47066 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.47441 * 299.99769 * 19 18 17 37 37 H 1.08999 * 109.47411 * 59.99662 * 19 18 17 38 38 H 1.09008 * 109.46852 * 60.00382 * 20 17 16 39 39 H 1.09006 * 109.47204 * 179.97438 * 20 17 16 40 40 H 1.09007 * 109.46966 * 180.02562 * 21 20 17 41 41 H 1.08995 * 109.47347 * 299.99613 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6193 1.9766 -0.8520 5 6 3.5437 1.4437 -0.0992 6 1 4.1362 1.8928 0.6842 7 6 4.1631 0.8714 -1.1900 8 7 3.4416 0.3249 -2.1442 9 14 6.0271 0.8722 -1.3126 10 1 6.5998 0.1441 -0.1520 11 1 6.4406 0.2016 -2.5713 12 1 6.5226 2.2721 -1.3123 13 7 1.6309 2.1065 1.2448 14 6 1.5795 3.5644 1.0716 15 6 0.2170 3.9626 0.5009 16 6 0.1634 5.4810 0.3210 17 6 0.3679 6.1625 1.6754 18 8 0.3173 7.5808 1.5075 19 6 -0.1733 8.2842 2.6505 20 6 1.7305 5.7643 2.2462 21 6 1.7841 4.2459 2.4260 22 1 -0.3634 -1.0236 -0.0909 23 1 -0.3634 0.4330 0.9319 24 1 -0.3633 0.5905 -0.8411 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8773 -0.0780 -2.9114 28 1 2.2420 1.8543 2.0070 29 1 2.3664 3.8765 0.3849 30 1 -0.5698 3.6504 1.1875 31 1 0.0711 3.4767 -0.4639 32 1 -0.8072 5.7646 -0.0860 33 1 0.9502 5.7936 -0.3655 34 1 -0.4189 5.8500 2.3619 35 1 -0.1813 9.3543 2.4428 36 1 -1.1865 7.9506 2.8753 37 1 0.4729 8.0843 3.5052 38 1 2.5174 6.0769 1.5596 39 1 1.8764 6.2502 3.2109 40 1 2.7547 3.9623 2.8330 41 1 0.9973 3.9334 3.1125 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164257445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:22 Heat of formation + Delta-G solvation = -91.842777 kcal Electronic energy + Delta-G solvation = -18348.586862 eV Core-core repulsion = 15647.497434 eV Total energy + Delta-G solvation = -2701.089427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31943 -38.37819 -36.52649 -33.98712 -32.63235 -31.72310 -29.53923 -27.83814 -26.72522 -24.60198 -23.67120 -22.39839 -21.22947 -20.68365 -18.60535 -17.55255 -16.81022 -16.71252 -16.13327 -16.01051 -15.40783 -14.90244 -14.73066 -14.61813 -14.07396 -13.90962 -13.44613 -13.20197 -13.14095 -13.05539 -12.83962 -12.65383 -12.51247 -12.25729 -12.02552 -11.98857 -11.83032 -11.58902 -11.42688 -11.30307 -11.16049 -10.85022 -10.44791 -10.33585 -9.01943 -8.04300 -6.26568 1.38098 1.38362 1.45928 2.39810 2.83249 3.14989 3.64297 3.78362 3.82812 4.22102 4.28466 4.41185 4.50900 4.54309 4.57376 4.59634 4.61388 4.66678 4.78302 4.81322 4.87669 4.94369 4.99000 5.09399 5.12696 5.22580 5.26105 5.28410 5.41546 5.45621 5.47330 5.56845 5.68092 5.81149 6.14325 6.24114 6.34147 6.43177 6.87362 7.06020 7.44926 8.91594 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026172 B = 0.006157 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.572344 B = 4546.217040 C = 5142.097406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.002 1.002 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.090 3.910 15 C -0.091 4.091 16 C -0.110 4.110 17 C 0.096 3.904 18 O -0.410 6.410 19 C 0.024 3.976 20 C -0.131 4.131 21 C -0.106 4.106 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.974 10.580 9.734 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.016 0.984 5 C -0.598 4.598 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.304 5.304 14 C -0.020 4.020 15 C -0.130 4.130 16 C -0.149 4.149 17 C 0.039 3.961 18 O -0.330 6.330 19 C -0.072 4.072 20 C -0.169 4.169 21 C -0.144 4.144 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.028 0.972 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.585 10.482 9.269 15.915 hybrid contribution 2.181 -0.114 -0.442 2.229 sum -5.403 10.368 8.827 14.649 Atomic orbital electron populations 1.21535 0.96303 0.99414 1.00687 1.21362 0.94471 0.98439 0.99925 1.18907 0.91117 0.91341 0.87072 0.98373 1.22170 0.94256 1.37587 1.05823 0.93410 1.25647 1.02001 0.94873 0.95464 1.69997 1.36458 1.38585 1.09954 0.85784 0.81300 0.78072 0.77497 1.19574 1.20869 1.20313 1.60871 1.55862 1.06185 1.07454 1.21395 0.95883 0.88530 0.96229 1.21345 0.97325 0.93791 1.00511 1.21530 1.02231 0.94408 0.96700 1.22112 0.96846 0.80237 0.96898 1.87882 1.86513 1.18941 1.39669 1.22973 0.98301 0.97687 0.88255 1.21929 0.97827 0.95596 1.01550 1.21564 1.02228 0.94280 0.96294 0.93875 0.92168 0.95221 0.92337 0.95335 0.92945 0.85443 0.97221 0.90559 0.93996 0.90511 0.93215 0.90498 0.88628 0.93005 0.93291 0.93030 0.90118 0.92188 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.92 9.73 71.98 0.70 -4.22 16 2 C -0.10 -4.99 5.44 30.59 0.17 -4.82 16 3 C 0.22 11.23 1.80 44.17 0.08 11.31 16 4 H 0.00 -0.10 7.15 -2.39 -0.02 -0.11 16 5 C -0.56 -30.58 8.21 25.60 0.21 -30.37 16 6 H 0.05 2.58 7.76 -2.91 -0.02 2.56 16 7 C 0.02 1.12 5.29 84.66 0.45 1.57 16 8 N -0.91 -52.71 11.30 21.45 0.24 -52.47 16 9 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.67 -27.60 5.55 -473.32 -2.63 -30.23 16 14 C 0.09 3.30 2.30 44.91 0.10 3.40 16 15 C -0.09 -3.02 5.41 30.59 0.17 -2.85 16 16 C -0.11 -3.19 5.57 30.59 0.17 -3.02 16 17 C 0.10 2.41 2.61 30.59 0.08 2.49 16 18 O -0.41 -10.41 10.35 -148.98 -1.54 -11.95 16 19 C 0.02 0.40 10.82 113.37 1.23 1.63 16 20 C -0.13 -3.36 5.54 30.59 0.17 -3.19 16 21 C -0.11 -3.01 5.19 30.59 0.16 -2.85 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 3.20 5.97 -2.39 -0.01 3.19 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 28 H 0.33 13.21 8.06 -89.70 -0.72 12.49 16 29 H 0.01 0.43 7.59 -2.39 -0.02 0.41 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.59 7.45 -2.38 -0.02 1.57 16 32 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.66 7.79 -2.39 -0.02 1.64 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.05 0.75 8.08 -2.38 -0.02 0.73 16 37 H 0.05 0.73 7.87 -2.39 -0.02 0.71 16 38 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.08 1.72 7.87 -2.38 -0.02 1.70 16 40 H 0.06 1.73 8.12 -2.38 -0.02 1.71 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -60.08 319.15 2.03 -58.06 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.25 Total: 21.60 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 3.68 Total: -30.94 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -2.39 Total: -82.70 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.54 Total: -11.95 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -60.08 2.03 -58.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164257445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.785 kcal (2) G-P(sol) polarization free energy of solvation -60.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds