Wall clock time and date at job start Sun Mar 29 2020 23:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46787 * 2 1 4 4 H 1.09001 * 109.47424 * 54.43388 * 3 2 1 5 5 N 1.46902 * 109.46961 * 294.44078 * 3 2 1 6 6 C 1.46894 * 111.00380 * 107.48697 * 5 3 2 7 7 C 1.53003 * 109.47310 * 174.58312 * 6 5 3 8 8 C 1.52998 * 109.47099 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47000 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00062 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99980 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00218 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00129 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47196 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47540 * 119.99606 * 13 11 9 16 16 H 1.48500 * 109.47546 * 239.99894 * 13 11 9 17 17 C 1.52995 * 109.47132 * 174.44116 * 3 2 1 18 18 H 1.09006 * 110.43154 * 303.90738 * 17 3 2 19 19 C 1.54805 * 110.49058 * 181.22217 * 17 3 2 20 20 C 1.54998 * 102.09492 * 220.44108 * 19 17 3 21 21 O 1.44379 * 103.48895 * 37.02037 * 20 19 17 22 22 C 1.43752 * 106.97508 * 319.94243 * 21 20 19 23 23 H 1.08997 * 109.47214 * 305.17118 * 1 2 3 24 24 H 1.08996 * 109.46880 * 65.16904 * 1 2 3 25 25 H 1.09003 * 109.46752 * 185.17151 * 1 2 3 26 26 H 1.08990 * 109.47120 * 240.00079 * 2 1 3 27 27 H 1.09001 * 109.46877 * 119.99305 * 2 1 3 28 28 H 1.00899 * 110.99750 * 343.52975 * 5 3 2 29 29 H 1.08993 * 109.47355 * 294.58656 * 6 5 3 30 30 H 1.09005 * 109.46724 * 54.58355 * 6 5 3 31 31 H 1.09001 * 109.46690 * 300.00110 * 7 6 5 32 32 H 1.08993 * 109.47075 * 59.99953 * 7 6 5 33 33 H 1.08993 * 109.47274 * 300.00165 * 8 7 6 34 34 H 1.09005 * 109.47016 * 59.99994 * 8 7 6 35 35 H 0.96999 * 120.00228 * 180.02562 * 12 11 9 36 36 H 1.09004 * 110.90895 * 338.63522 * 19 17 3 37 37 H 1.09002 * 110.91143 * 102.23782 * 19 17 3 38 38 H 1.08999 * 110.61525 * 278.52329 * 20 19 17 39 39 H 1.08993 * 110.75701 * 155.58506 * 20 19 17 40 40 H 1.09004 * 109.87367 * 267.08636 * 22 21 20 41 41 H 1.08996 * 109.87965 * 145.94070 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5976 1.9844 0.8359 5 7 1.6629 2.0952 -1.2609 6 6 0.5881 3.0733 -1.0466 7 6 0.3163 3.8263 -2.3505 8 6 -0.8027 4.8455 -2.1271 9 6 -1.0700 5.5875 -3.4112 10 1 -0.4992 5.3551 -4.2980 11 6 -2.0441 6.5624 -3.4541 12 7 -2.7396 6.8451 -2.3743 13 14 -2.3759 7.4817 -5.0460 14 1 -1.4649 6.9805 -6.1062 15 1 -3.7853 7.2628 -5.4596 16 1 -2.1410 8.9331 -4.8377 17 6 3.5636 1.4449 0.1397 18 1 3.8643 0.9033 1.0367 19 6 4.1024 2.8958 0.1732 20 6 5.3815 2.7873 -0.6956 21 8 5.0057 1.8566 -1.7334 22 6 4.2207 0.8266 -1.1094 23 1 -0.3633 0.5919 0.8400 24 1 -0.3633 0.4315 -0.9326 25 1 -0.3633 -1.0235 0.0926 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 1.3980 1.4133 -1.9558 29 1 -0.3172 2.5550 -0.7308 30 1 0.8897 3.7811 -0.2744 31 1 1.2217 4.3446 -2.6662 32 1 0.0148 3.1186 -3.1227 33 1 -1.7081 4.3275 -1.8111 34 1 -0.5007 5.5532 -1.3550 35 1 -3.4251 7.5307 -2.4046 36 1 3.3870 3.5869 -0.2726 37 1 4.3483 3.1961 1.1918 38 1 6.2115 2.3935 -0.1091 39 1 5.6408 3.7554 -1.1238 40 1 4.8638 -0.0037 -0.8174 41 1 3.4517 0.4778 -1.7986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167262292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:00 Heat of formation + Delta-G solvation = -73.547561 kcal Electronic energy + Delta-G solvation = -17916.707755 eV Core-core repulsion = 15216.411668 eV Total energy + Delta-G solvation = -2700.296087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.71441 -37.15834 -34.27630 -32.44996 -31.82333 -30.21920 -29.18028 -26.35839 -24.84681 -23.11512 -22.27171 -21.30061 -20.26196 -19.35594 -16.68817 -16.24878 -16.00015 -15.58037 -14.92606 -14.87909 -14.40260 -13.76219 -13.67863 -13.24333 -12.69663 -12.63690 -12.53812 -12.19633 -11.90513 -11.50497 -11.47199 -11.24369 -11.13349 -10.91100 -10.73071 -10.70232 -10.52037 -10.47916 -10.29065 -9.64712 -9.50484 -9.27694 -8.99596 -8.31243 -8.03763 -5.96459 -3.98040 3.33725 3.41073 3.46166 4.05292 4.39049 4.49812 4.54112 4.69210 5.01591 5.04095 5.06971 5.21350 5.26448 5.36268 5.39551 5.58563 5.62188 5.66991 5.78211 5.82729 5.85203 5.86177 5.89437 6.00097 6.05209 6.10070 6.18998 6.35473 6.41678 6.78287 6.85035 7.02665 7.20213 7.42787 7.69669 7.73422 7.88430 8.04644 8.48596 9.09656 9.65952 11.15069 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.004827 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.992614 B = 5799.390439 C = 6418.795115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.092 3.908 4 H 0.072 0.928 5 N -0.678 5.678 6 C 0.060 3.940 7 C -0.105 4.105 8 C 0.022 3.978 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.284 1.284 17 C -0.110 4.110 18 H 0.075 0.925 19 C -0.144 4.144 20 C 0.050 3.950 21 O -0.372 6.372 22 C 0.065 3.935 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.338 0.662 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.084 -13.340 7.457 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.185 4.185 3 C -0.019 4.019 4 H 0.090 0.910 5 N -0.309 5.309 6 C -0.069 4.069 7 C -0.143 4.143 8 C -0.016 4.016 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.130 4.130 18 H 0.093 0.907 19 C -0.182 4.182 20 C -0.027 4.027 21 O -0.291 6.291 22 C -0.012 4.012 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.497 -12.741 7.327 19.293 hybrid contribution -1.147 -0.055 -0.350 1.200 sum 11.351 -12.796 6.977 18.473 Atomic orbital electron populations 1.21841 0.95491 1.01579 1.02447 1.22184 0.96408 0.97616 1.02310 1.21555 0.93747 0.93018 0.93550 0.91022 1.60537 1.42956 1.19243 1.08167 1.22223 0.90917 0.93780 0.99932 1.21590 1.00369 0.98085 0.94262 1.19067 0.92450 0.93057 0.96994 1.21310 1.18490 1.18997 0.96657 0.92628 1.25028 0.96115 0.97143 0.96259 1.69980 1.23462 1.32495 1.27801 0.86553 0.77991 0.79673 0.83900 1.19705 1.21083 1.21040 1.22601 0.95914 0.96560 0.97908 0.90707 1.23116 0.97890 0.97298 0.99870 1.23453 0.95961 0.93793 0.89486 1.88872 1.70810 1.37479 1.31922 1.23033 0.93601 0.90135 0.94474 0.92612 0.92282 0.92772 0.91545 0.91722 0.84382 0.95638 0.91838 0.92612 0.93775 0.96928 0.96722 0.93152 0.88741 0.91404 0.93251 0.89366 0.93843 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.01 37.16 0.33 -1.30 16 2 C -0.15 -1.42 4.96 -26.72 -0.13 -1.55 16 3 C 0.09 1.05 1.84 -67.71 -0.12 0.92 16 4 H 0.07 0.87 7.50 -51.93 -0.39 0.49 16 5 N -0.68 -9.46 4.47 -106.73 -0.48 -9.94 16 6 C 0.06 1.01 5.18 -3.83 -0.02 0.99 16 7 C -0.10 -2.20 5.46 -26.73 -0.15 -2.35 16 8 C 0.02 0.57 4.97 -27.89 -0.14 0.44 16 9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 13 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C -0.11 -1.18 2.93 -89.10 -0.26 -1.44 16 18 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 19 C -0.14 -1.66 6.59 -24.73 -0.16 -1.83 16 20 C 0.05 0.58 7.72 38.21 0.29 0.87 16 21 O -0.37 -5.32 11.52 -35.23 -0.41 -5.72 16 22 C 0.06 0.75 6.65 37.73 0.25 1.00 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.70 6.74 -51.93 -0.35 0.35 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.62 6.92 -51.93 -0.36 0.26 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.34 4.58 7.48 -39.29 -0.29 4.29 16 29 H 0.03 0.43 6.76 -51.93 -0.35 0.08 16 30 H 0.06 1.10 8.00 -51.93 -0.42 0.69 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.09 1.33 7.31 -51.93 -0.38 0.95 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.99 6.05 -51.93 -0.31 0.67 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -30.65 320.52 -8.32 -38.97 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.47 Total: -0.56 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -0.52 Total: -17.98 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.26 Total: -36.57 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.41 Total: -5.72 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.65 -8.32 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167262292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.575 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds