Wall clock time and date at job start Sun Mar 29 2020 22:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46787 * 2 1 4 4 H 1.09001 * 109.47424 * 54.43388 * 3 2 1 5 5 N 1.46902 * 109.46961 * 294.44078 * 3 2 1 6 6 C 1.46894 * 111.00380 * 107.48697 * 5 3 2 7 7 C 1.53003 * 109.47310 * 174.58312 * 6 5 3 8 8 C 1.52998 * 109.47099 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47000 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00062 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99980 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00218 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00129 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47196 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47540 * 119.99606 * 13 11 9 16 16 H 1.48500 * 109.47546 * 239.99894 * 13 11 9 17 17 C 1.52995 * 109.47132 * 174.44116 * 3 2 1 18 18 H 1.09006 * 110.43154 * 303.90738 * 17 3 2 19 19 C 1.54805 * 110.49058 * 181.22217 * 17 3 2 20 20 C 1.54998 * 102.09492 * 220.44108 * 19 17 3 21 21 O 1.44379 * 103.48895 * 37.02037 * 20 19 17 22 22 C 1.43752 * 106.97508 * 319.94243 * 21 20 19 23 23 H 1.08997 * 109.47214 * 305.17118 * 1 2 3 24 24 H 1.08996 * 109.46880 * 65.16904 * 1 2 3 25 25 H 1.09003 * 109.46752 * 185.17151 * 1 2 3 26 26 H 1.08990 * 109.47120 * 240.00079 * 2 1 3 27 27 H 1.09001 * 109.46877 * 119.99305 * 2 1 3 28 28 H 1.00899 * 110.99750 * 343.52975 * 5 3 2 29 29 H 1.08993 * 109.47355 * 294.58656 * 6 5 3 30 30 H 1.09005 * 109.46724 * 54.58355 * 6 5 3 31 31 H 1.09001 * 109.46690 * 300.00110 * 7 6 5 32 32 H 1.08993 * 109.47075 * 59.99953 * 7 6 5 33 33 H 1.08993 * 109.47274 * 300.00165 * 8 7 6 34 34 H 1.09005 * 109.47016 * 59.99994 * 8 7 6 35 35 H 0.96999 * 120.00228 * 180.02562 * 12 11 9 36 36 H 1.09004 * 110.90895 * 338.63522 * 19 17 3 37 37 H 1.09002 * 110.91143 * 102.23782 * 19 17 3 38 38 H 1.08999 * 110.61525 * 278.52329 * 20 19 17 39 39 H 1.08993 * 110.75701 * 155.58506 * 20 19 17 40 40 H 1.09004 * 109.87367 * 267.08636 * 22 21 20 41 41 H 1.08996 * 109.87965 * 145.94070 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5976 1.9844 0.8359 5 7 1.6629 2.0952 -1.2609 6 6 0.5881 3.0733 -1.0466 7 6 0.3163 3.8263 -2.3505 8 6 -0.8027 4.8455 -2.1271 9 6 -1.0700 5.5875 -3.4112 10 1 -0.4992 5.3551 -4.2980 11 6 -2.0441 6.5624 -3.4541 12 7 -2.7396 6.8451 -2.3743 13 14 -2.3759 7.4817 -5.0460 14 1 -1.4649 6.9805 -6.1062 15 1 -3.7853 7.2628 -5.4596 16 1 -2.1410 8.9331 -4.8377 17 6 3.5636 1.4449 0.1397 18 1 3.8643 0.9033 1.0367 19 6 4.1024 2.8958 0.1732 20 6 5.3815 2.7873 -0.6956 21 8 5.0057 1.8566 -1.7334 22 6 4.2207 0.8266 -1.1094 23 1 -0.3633 0.5919 0.8400 24 1 -0.3633 0.4315 -0.9326 25 1 -0.3633 -1.0235 0.0926 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 1.3980 1.4133 -1.9558 29 1 -0.3172 2.5550 -0.7308 30 1 0.8897 3.7811 -0.2744 31 1 1.2217 4.3446 -2.6662 32 1 0.0148 3.1186 -3.1227 33 1 -1.7081 4.3275 -1.8111 34 1 -0.5007 5.5532 -1.3550 35 1 -3.4251 7.5307 -2.4046 36 1 3.3870 3.5869 -0.2726 37 1 4.3483 3.1961 1.1918 38 1 6.2115 2.3935 -0.1091 39 1 5.6408 3.7554 -1.1238 40 1 4.8638 -0.0037 -0.8174 41 1 3.4517 0.4778 -1.7986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167262292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:59 Heat of formation + Delta-G solvation = -92.729305 kcal Electronic energy + Delta-G solvation = -17917.539538 eV Core-core repulsion = 15216.411668 eV Total energy + Delta-G solvation = -2701.127870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.65618 -38.25743 -36.04624 -34.25536 -32.71634 -31.78452 -30.14301 -28.01203 -26.11109 -24.21710 -23.81491 -22.22719 -21.84814 -20.42967 -18.51299 -17.52727 -16.99552 -16.81445 -16.51580 -15.85224 -15.81966 -15.25673 -14.82819 -14.42290 -14.18424 -13.71837 -13.56999 -13.47972 -13.38876 -13.23279 -12.75556 -12.51373 -12.46088 -12.28953 -12.14888 -11.97144 -11.73445 -11.52260 -11.50816 -11.34521 -11.33269 -10.97518 -10.56250 -10.42348 -9.18554 -8.20884 -6.31675 1.39087 1.39497 1.53283 2.40580 3.12157 3.13946 3.32907 3.63607 3.82214 4.14548 4.16004 4.21970 4.28449 4.36049 4.45164 4.45856 4.50681 4.70383 4.76240 4.80934 4.87140 4.93606 4.97494 5.00195 5.05790 5.09423 5.09610 5.15180 5.24940 5.28803 5.37874 5.44014 5.53853 5.76030 5.86297 6.12375 6.18031 6.30204 6.57472 6.85335 7.37621 8.91230 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026534 B = 0.004827 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.992614 B = 5799.390439 C = 6418.795115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.092 3.908 4 H 0.065 0.935 5 N -0.679 5.679 6 C 0.078 3.922 7 C -0.090 4.090 8 C 0.027 3.973 9 C -0.542 4.542 10 H 0.056 0.944 11 C 0.000 4.000 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.104 4.104 18 H 0.102 0.898 19 C -0.145 4.145 20 C 0.047 3.953 21 O -0.404 6.404 22 C 0.061 3.939 23 H 0.047 0.953 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.341 0.659 29 H 0.025 0.975 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.046 0.954 33 H -0.009 1.009 34 H -0.010 1.010 35 H 0.264 0.736 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.038 -14.462 7.463 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.177 4.177 3 C -0.018 4.018 4 H 0.083 0.917 5 N -0.310 5.310 6 C -0.051 4.051 7 C -0.128 4.128 8 C -0.011 4.011 9 C -0.580 4.580 10 H 0.075 0.925 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.789 3.211 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.123 4.123 18 H 0.120 0.880 19 C -0.183 4.183 20 C -0.029 4.029 21 O -0.324 6.324 22 C -0.016 4.016 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.160 0.840 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.009 0.991 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.464 -13.881 7.339 20.684 hybrid contribution -1.433 0.288 -0.315 1.496 sum 12.031 -13.593 7.024 19.464 Atomic orbital electron populations 1.21835 0.96262 1.02155 1.01119 1.22118 0.95577 0.96315 1.03676 1.21616 0.94527 0.93917 0.91737 0.91720 1.60451 1.41305 1.19418 1.09853 1.21861 0.91978 0.94096 0.97187 1.21333 0.97817 0.97082 0.96532 1.18960 0.93254 0.93469 0.95414 1.21724 1.18942 1.19811 0.97550 0.92539 1.25973 0.95706 0.98016 1.00083 1.70101 1.23998 1.33167 1.30145 0.85403 0.78168 0.78221 0.79291 1.18787 1.20166 1.20250 1.22610 0.94832 0.96166 0.98716 0.87998 1.23081 0.97252 0.97302 1.00635 1.23578 0.96619 0.93520 0.89225 1.88833 1.71387 1.38526 1.33616 1.23158 0.93753 0.90163 0.94487 0.93365 0.94098 0.91345 0.90816 0.89606 0.84005 0.95657 0.92536 0.93542 0.93547 0.99085 0.99186 0.92755 0.91821 0.89509 0.90969 0.89795 0.91848 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.01 71.98 0.65 -2.41 16 2 C -0.14 -2.34 4.96 30.60 0.15 -2.19 16 3 C 0.09 1.96 1.84 44.91 0.08 2.04 16 4 H 0.06 1.50 7.50 -2.39 -0.02 1.48 16 5 N -0.68 -18.65 4.47 -491.58 -2.20 -20.85 16 6 C 0.08 2.68 5.18 86.31 0.45 3.12 16 7 C -0.09 -3.85 5.46 30.59 0.17 -3.68 16 8 C 0.03 1.45 4.97 29.85 0.15 1.60 16 9 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 10 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 12 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 13 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 C -0.10 -1.98 2.93 -9.81 -0.03 -2.01 16 18 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 19 C -0.14 -3.15 6.59 31.89 0.21 -2.94 16 20 C 0.05 1.03 7.72 72.67 0.56 1.59 16 21 O -0.40 -11.07 11.52 -148.98 -1.72 -12.78 16 22 C 0.06 1.28 6.65 72.35 0.48 1.77 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.04 0.94 6.74 -2.39 -0.02 0.92 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.18 6.92 -2.39 -0.02 1.16 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.34 9.02 7.48 -89.69 -0.67 8.35 16 29 H 0.03 0.87 6.76 -2.39 -0.02 0.85 16 30 H 0.06 2.02 8.00 -2.38 -0.02 2.00 16 31 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 35 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.06 1.79 7.31 -2.39 -0.02 1.77 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.70 6.05 -2.39 -0.01 1.68 16 Total: -1.00 -66.49 320.52 2.27 -64.22 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.31 Total: 14.02 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 3.56 Total: -34.39 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.91 Total: -78.41 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.72 Total: -12.78 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.49 2.27 -64.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167262292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.509 kcal (2) G-P(sol) polarization free energy of solvation -66.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds