Wall clock time and date at job start Sun Mar 29 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46740 * 2 1 4 4 H 1.09007 * 109.47299 * 305.13850 * 3 2 1 5 5 N 1.46895 * 109.47460 * 65.14476 * 3 2 1 6 6 C 1.46901 * 110.99827 * 57.97652 * 5 3 2 7 7 C 1.53000 * 109.46939 * 174.52838 * 6 5 3 8 8 C 1.53005 * 109.47203 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47316 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99952 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99951 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00388 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47068 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47100 * 119.99915 * 13 11 9 16 16 H 1.48497 * 109.47305 * 240.00546 * 13 11 9 17 17 C 1.52999 * 109.47110 * 185.14533 * 3 2 1 18 18 H 1.09002 * 110.80434 * 303.63011 * 17 3 2 19 19 C 1.54817 * 110.90992 * 180.02562 * 17 3 2 20 20 C 1.54106 * 104.18613 * 220.92043 * 19 17 3 21 21 O 1.43747 * 107.29338 * 357.96786 * 20 19 17 22 22 C 1.44375 * 106.97689 * 26.51491 * 21 20 19 23 23 H 1.08996 * 109.47355 * 55.03067 * 1 2 3 24 24 H 1.09004 * 109.46783 * 175.03266 * 1 2 3 25 25 H 1.09004 * 109.46931 * 295.02824 * 1 2 3 26 26 H 1.08997 * 109.47141 * 240.00240 * 2 1 3 27 27 H 1.08993 * 109.47232 * 119.99932 * 2 1 3 28 28 H 1.00901 * 110.99812 * 294.02302 * 5 3 2 29 29 H 1.08992 * 109.47552 * 54.52897 * 6 5 3 30 30 H 1.09003 * 109.46764 * 294.52311 * 6 5 3 31 31 H 1.08994 * 109.47428 * 299.99771 * 7 6 5 32 32 H 1.09002 * 109.47311 * 60.00409 * 7 6 5 33 33 H 1.08994 * 109.47005 * 300.00353 * 8 7 6 34 34 H 1.09002 * 109.46389 * 60.00168 * 8 7 6 35 35 H 0.97002 * 120.00280 * 179.97438 * 12 11 9 36 36 H 1.09003 * 110.48481 * 339.59064 * 19 17 3 37 37 H 1.08993 * 110.48873 * 102.11284 * 19 17 3 38 38 H 1.09002 * 109.87750 * 117.39149 * 20 19 17 39 39 H 1.08998 * 109.87607 * 238.39167 * 20 19 17 40 40 H 1.09005 * 110.61798 * 201.43996 * 22 21 20 41 41 H 1.08996 * 110.61785 * 78.44096 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6033 1.9823 -0.8404 5 7 1.6543 2.0983 1.2566 6 6 2.1862 1.3692 2.4157 7 6 1.8820 2.1524 3.6943 8 6 2.4355 1.3927 4.9016 9 6 2.1364 2.1644 6.1610 10 1 1.6043 3.1026 6.1058 11 6 2.5410 1.6721 7.3836 12 7 3.1885 0.5294 7.4509 13 14 2.1697 2.6284 8.9448 14 1 1.4355 3.8724 8.6004 15 1 1.3355 1.7960 9.8485 16 1 3.4421 2.9766 9.6265 17 6 3.5644 1.4446 -0.1294 18 1 4.0212 0.8557 0.6660 19 6 4.1168 2.8909 -0.1322 20 6 5.2191 2.8720 -1.2090 21 8 5.3007 1.5285 -1.7134 22 6 4.0020 0.9271 -1.5234 23 1 -0.3634 0.5890 -0.8421 24 1 -0.3633 -1.0239 -0.0890 25 1 -0.3633 0.4348 0.9312 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.6521 2.1969 1.3203 29 1 3.2647 1.2535 2.3085 30 1 1.7191 0.3859 2.4720 31 1 2.3490 3.1356 3.6380 32 1 0.8035 2.2680 3.8017 33 1 1.9681 0.4097 4.9578 34 1 3.5140 1.2767 4.7945 35 1 3.4735 0.1833 8.3110 36 1 3.3324 3.5982 -0.4016 37 1 4.5366 3.1408 0.8421 38 1 4.9597 3.5562 -2.0169 39 1 6.1725 3.1635 -0.7684 40 1 4.0789 -0.1602 -1.5224 41 1 3.3071 1.2631 -2.2930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167262396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:01 Heat of formation + Delta-G solvation = -74.860841 kcal Electronic energy + Delta-G solvation = -17847.815434 eV Core-core repulsion = 15147.462398 eV Total energy + Delta-G solvation = -2700.353035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81968 -37.48119 -34.17039 -32.34927 -31.91813 -30.22759 -29.34405 -26.51197 -24.75328 -22.99091 -22.80276 -21.15699 -20.34554 -19.28422 -16.63570 -16.32829 -15.96441 -15.71469 -15.02462 -14.76460 -14.43901 -14.00121 -13.93973 -13.47940 -13.13524 -12.74275 -12.31783 -12.16809 -11.79814 -11.52790 -11.45444 -11.40993 -10.96703 -10.89113 -10.82158 -10.68286 -10.62932 -10.45927 -10.25419 -9.74391 -9.64360 -9.31148 -9.02932 -8.33408 -8.12649 -5.98357 -4.00305 3.31983 3.39384 3.43854 3.88384 4.27502 4.48095 4.60167 4.71854 4.99069 5.02462 5.03628 5.08596 5.19837 5.33211 5.37592 5.48427 5.57994 5.59500 5.68015 5.77025 5.78930 5.86262 5.90992 5.97769 6.05597 6.17367 6.18152 6.29058 6.41769 6.74078 6.80174 6.81793 7.16287 7.35735 7.63800 7.70585 7.85632 8.02347 8.45917 9.07296 9.63794 11.13139 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027453 B = 0.004653 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.683603 B = 6016.526900 C = 6567.913640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.166 4.166 3 C 0.099 3.901 4 H 0.078 0.922 5 N -0.681 5.681 6 C 0.054 3.946 7 C -0.105 4.105 8 C 0.022 3.978 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.114 4.114 18 H 0.088 0.912 19 C -0.135 4.135 20 C 0.043 3.957 21 O -0.382 6.382 22 C 0.053 3.947 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.338 0.662 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 1.123 -18.339 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.205 4.205 3 C -0.011 4.011 4 H 0.096 0.904 5 N -0.311 5.311 6 C -0.075 4.075 7 C -0.143 4.143 8 C -0.016 4.016 9 C -0.556 4.556 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.133 4.133 18 H 0.106 0.894 19 C -0.173 4.173 20 C -0.034 4.034 21 O -0.301 6.301 22 C -0.025 4.025 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.923 1.378 -18.322 18.397 hybrid contribution -0.945 -0.300 1.121 1.497 sum -1.868 1.078 -17.200 17.335 Atomic orbital electron populations 1.21754 0.95706 1.01731 1.01759 1.22334 0.96456 0.98904 1.02775 1.21529 0.93587 0.92430 0.93593 0.90424 1.60697 1.17287 1.51917 1.01212 1.22195 0.99770 0.95268 0.90218 1.21595 0.99964 0.99317 0.93433 1.19066 0.96148 0.95256 0.91108 1.21296 1.36118 1.06631 0.91526 0.92657 1.25028 0.95270 0.95044 0.99179 1.69976 1.39290 1.19425 1.24944 0.86555 0.78027 0.80103 0.83440 1.19727 1.21064 1.21015 1.22779 0.95679 0.97075 0.97817 0.89419 1.22793 0.97807 0.96967 0.99755 1.23236 0.99954 0.84346 0.95843 1.88848 1.31523 1.26452 1.83296 1.23587 0.84853 0.98531 0.95486 0.92817 0.92710 0.92574 0.91844 0.90994 0.84336 0.91402 0.95419 0.92724 0.93806 0.96905 0.96695 0.93111 0.90208 0.90173 0.92802 0.90096 0.89242 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.57 37.16 0.36 -1.15 16 2 C -0.17 -1.76 5.07 -26.73 -0.14 -1.90 16 3 C 0.10 1.11 1.96 -67.72 -0.13 0.98 16 4 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 5 N -0.68 -9.19 6.00 -106.73 -0.64 -9.83 16 6 C 0.05 0.90 4.86 -3.82 -0.02 0.88 16 7 C -0.11 -2.16 5.46 -26.73 -0.15 -2.31 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 10 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 13 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C -0.11 -1.35 2.20 -88.61 -0.20 -1.54 16 18 H 0.09 1.19 6.60 -51.93 -0.34 0.84 16 19 C -0.14 -1.58 6.27 -25.20 -0.16 -1.74 16 20 C 0.04 0.48 7.70 37.74 0.29 0.77 16 21 O -0.38 -4.97 11.52 -35.23 -0.41 -5.37 16 22 C 0.05 0.57 6.36 38.21 0.24 0.81 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.61 7.17 -51.93 -0.37 0.24 16 26 H 0.06 0.59 7.27 -51.93 -0.38 0.22 16 27 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 28 H 0.34 4.33 7.56 -39.29 -0.30 4.03 16 29 H 0.07 1.18 6.19 -51.93 -0.32 0.86 16 30 H 0.03 0.47 6.47 -51.93 -0.34 0.13 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.08 0.90 7.86 -51.93 -0.41 0.50 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.88 7.97 -51.93 -0.41 0.47 16 41 H 0.06 0.55 8.01 -51.93 -0.42 0.14 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -30.29 319.36 -8.34 -38.63 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.37 Total: -0.17 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -0.45 Total: -18.41 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.10 Total: -36.33 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.41 Total: -5.37 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.29 -8.34 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167262396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.230 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds