Wall clock time and date at job start Sun Mar 29 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46740 * 2 1 4 4 H 1.09007 * 109.47299 * 305.13850 * 3 2 1 5 5 N 1.46895 * 109.47460 * 65.14476 * 3 2 1 6 6 C 1.46901 * 110.99827 * 57.97652 * 5 3 2 7 7 C 1.53000 * 109.46939 * 174.52838 * 6 5 3 8 8 C 1.53005 * 109.47203 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47316 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99952 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99951 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00388 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47068 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47100 * 119.99915 * 13 11 9 16 16 H 1.48497 * 109.47305 * 240.00546 * 13 11 9 17 17 C 1.52999 * 109.47110 * 185.14533 * 3 2 1 18 18 H 1.09002 * 110.80434 * 303.63011 * 17 3 2 19 19 C 1.54817 * 110.90992 * 180.02562 * 17 3 2 20 20 C 1.54106 * 104.18613 * 220.92043 * 19 17 3 21 21 O 1.43747 * 107.29338 * 357.96786 * 20 19 17 22 22 C 1.44375 * 106.97689 * 26.51491 * 21 20 19 23 23 H 1.08996 * 109.47355 * 55.03067 * 1 2 3 24 24 H 1.09004 * 109.46783 * 175.03266 * 1 2 3 25 25 H 1.09004 * 109.46931 * 295.02824 * 1 2 3 26 26 H 1.08997 * 109.47141 * 240.00240 * 2 1 3 27 27 H 1.08993 * 109.47232 * 119.99932 * 2 1 3 28 28 H 1.00901 * 110.99812 * 294.02302 * 5 3 2 29 29 H 1.08992 * 109.47552 * 54.52897 * 6 5 3 30 30 H 1.09003 * 109.46764 * 294.52311 * 6 5 3 31 31 H 1.08994 * 109.47428 * 299.99771 * 7 6 5 32 32 H 1.09002 * 109.47311 * 60.00409 * 7 6 5 33 33 H 1.08994 * 109.47005 * 300.00353 * 8 7 6 34 34 H 1.09002 * 109.46389 * 60.00168 * 8 7 6 35 35 H 0.97002 * 120.00280 * 179.97438 * 12 11 9 36 36 H 1.09003 * 110.48481 * 339.59064 * 19 17 3 37 37 H 1.08993 * 110.48873 * 102.11284 * 19 17 3 38 38 H 1.09002 * 109.87750 * 117.39149 * 20 19 17 39 39 H 1.08998 * 109.87607 * 238.39167 * 20 19 17 40 40 H 1.09005 * 110.61798 * 201.43996 * 22 21 20 41 41 H 1.08996 * 110.61785 * 78.44096 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6033 1.9823 -0.8404 5 7 1.6543 2.0983 1.2566 6 6 2.1862 1.3692 2.4157 7 6 1.8820 2.1524 3.6943 8 6 2.4355 1.3927 4.9016 9 6 2.1364 2.1644 6.1610 10 1 1.6043 3.1026 6.1058 11 6 2.5410 1.6721 7.3836 12 7 3.1885 0.5294 7.4509 13 14 2.1697 2.6284 8.9448 14 1 1.4355 3.8724 8.6004 15 1 1.3355 1.7960 9.8485 16 1 3.4421 2.9766 9.6265 17 6 3.5644 1.4446 -0.1294 18 1 4.0212 0.8557 0.6660 19 6 4.1168 2.8909 -0.1322 20 6 5.2191 2.8720 -1.2090 21 8 5.3007 1.5285 -1.7134 22 6 4.0020 0.9271 -1.5234 23 1 -0.3634 0.5890 -0.8421 24 1 -0.3633 -1.0239 -0.0890 25 1 -0.3633 0.4348 0.9312 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.6521 2.1969 1.3203 29 1 3.2647 1.2535 2.3085 30 1 1.7191 0.3859 2.4720 31 1 2.3490 3.1356 3.6380 32 1 0.8035 2.2680 3.8017 33 1 1.9681 0.4097 4.9578 34 1 3.5140 1.2767 4.7945 35 1 3.4735 0.1833 8.3110 36 1 3.3324 3.5982 -0.4016 37 1 4.5366 3.1408 0.8421 38 1 4.9597 3.5562 -2.0169 39 1 6.1725 3.1635 -0.7684 40 1 4.0789 -0.1602 -1.5224 41 1 3.3071 1.2631 -2.2930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167262396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:01 Heat of formation + Delta-G solvation = -94.378464 kcal Electronic energy + Delta-G solvation = -17848.661781 eV Core-core repulsion = 15147.462398 eV Total energy + Delta-G solvation = -2701.199383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76491 -38.55297 -35.98865 -34.11619 -32.82126 -31.75090 -30.22938 -28.22237 -25.90573 -24.56218 -23.75736 -22.18479 -22.01087 -20.35082 -18.47608 -17.55812 -17.05496 -16.76416 -16.48744 -16.19877 -15.66511 -15.26997 -15.02655 -14.65687 -14.30797 -14.06399 -13.72965 -13.56279 -13.27486 -12.90712 -12.77052 -12.52341 -12.40708 -12.34235 -12.23403 -11.83636 -11.77502 -11.70230 -11.45837 -11.34535 -11.23667 -11.06126 -10.61404 -10.56636 -9.26808 -8.20927 -6.32038 1.39350 1.39683 1.53323 2.40417 3.00817 3.12300 3.23787 3.68989 3.75656 4.07682 4.11960 4.17601 4.21192 4.25295 4.38794 4.45573 4.48255 4.63706 4.74227 4.74802 4.77878 4.86782 4.93714 4.96638 5.01462 5.06784 5.13932 5.20671 5.25137 5.27213 5.34703 5.41767 5.53002 5.75395 5.85858 5.94215 6.10905 6.27751 6.56087 6.85427 7.37518 8.91278 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027453 B = 0.004653 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.683603 B = 6016.526900 C = 6567.913640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.162 4.162 3 C 0.104 3.896 4 H 0.101 0.899 5 N -0.679 5.679 6 C 0.072 3.928 7 C -0.091 4.091 8 C 0.026 3.974 9 C -0.541 4.541 10 H 0.059 0.941 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.278 1.278 17 C -0.116 4.116 18 H 0.062 0.938 19 C -0.133 4.133 20 C 0.043 3.957 21 O -0.405 6.405 22 C 0.055 3.945 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.346 0.654 29 H 0.057 0.943 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.049 0.951 33 H -0.011 1.011 34 H -0.012 1.012 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 2.136 -19.449 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C -0.006 4.006 4 H 0.119 0.881 5 N -0.310 5.310 6 C -0.057 4.057 7 C -0.129 4.129 8 C -0.012 4.012 9 C -0.579 4.579 10 H 0.077 0.923 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.203 1.203 16 H -0.204 1.204 17 C -0.135 4.135 18 H 0.081 0.919 19 C -0.171 4.171 20 C -0.034 4.034 21 O -0.325 6.325 22 C -0.021 4.021 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.165 0.835 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.007 0.993 34 H 0.006 0.994 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.014 2.397 -19.450 19.700 hybrid contribution -0.587 -0.642 1.435 1.678 sum -2.601 1.755 -18.015 18.287 Atomic orbital electron populations 1.21745 0.94881 1.02298 1.01843 1.22291 0.97115 0.98255 1.02494 1.21590 0.93221 0.92979 0.92771 0.88106 1.60589 1.17788 1.51621 1.00959 1.21810 0.99282 0.94663 0.89942 1.21350 0.99707 0.98653 0.93148 1.18967 0.94411 0.94656 0.93170 1.21729 1.36324 1.07058 0.92821 0.92259 1.25996 0.94847 0.96019 1.03038 1.70107 1.40205 1.21115 1.26111 0.85393 0.78107 0.78867 0.78654 1.18536 1.20278 1.20354 1.22743 0.95974 0.96833 0.97958 0.91932 1.22754 0.98239 0.97060 0.99054 1.23310 0.99824 0.84066 0.96171 1.88822 1.32818 1.27344 1.83474 1.23680 0.84441 0.98970 0.95034 0.91034 0.92300 0.93820 0.90058 0.93376 0.83482 0.92443 0.95796 0.93134 0.93262 0.99281 0.99390 0.92788 0.89387 0.92168 0.90903 0.90016 0.88524 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.57 71.98 0.69 -1.98 16 2 C -0.16 -3.19 5.07 30.59 0.15 -3.04 16 3 C 0.10 2.14 1.96 44.92 0.09 2.23 16 4 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 5 N -0.68 -17.52 6.00 -491.58 -2.95 -20.47 16 6 C 0.07 2.44 4.86 86.30 0.42 2.85 16 7 C -0.09 -3.78 5.46 30.60 0.17 -3.61 16 8 C 0.03 1.38 4.97 29.85 0.15 1.53 16 9 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 10 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 12 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 13 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 C -0.12 -2.62 2.20 -9.49 -0.02 -2.64 16 18 H 0.06 1.73 6.60 -2.39 -0.02 1.71 16 19 C -0.13 -2.99 6.27 31.59 0.20 -2.80 16 20 C 0.04 0.89 7.70 72.36 0.56 1.45 16 21 O -0.41 -9.97 11.52 -148.98 -1.72 -11.69 16 22 C 0.06 1.08 6.36 72.67 0.46 1.55 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.98 16 25 H 0.04 0.88 7.17 -2.39 -0.02 0.86 16 26 H 0.08 1.32 7.27 -2.39 -0.02 1.30 16 27 H 0.05 1.19 6.21 -2.39 -0.01 1.17 16 28 H 0.35 8.24 7.56 -89.69 -0.68 7.56 16 29 H 0.06 2.07 6.19 -2.39 -0.01 2.05 16 30 H 0.02 0.83 6.47 -2.39 -0.02 0.81 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.09 1.82 7.86 -2.39 -0.02 1.80 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.10 1.73 7.97 -2.38 -0.02 1.71 16 41 H 0.08 1.24 8.01 -2.39 -0.02 1.22 16 Total: -1.00 -65.53 319.36 1.51 -64.02 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.30 Total: 14.19 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.56 Total: -35.34 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -2.66 Total: -78.06 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -1.72 Total: -11.69 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -65.53 1.51 -64.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167262396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.357 kcal (2) G-P(sol) polarization free energy of solvation -65.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds