Wall clock time and date at job start Sun Mar 29 2020 23:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 H 1.09001 * 109.47036 * 56.20220 * 3 2 1 5 5 N 1.46894 * 109.47151 * 296.19592 * 3 2 1 6 6 C 1.46909 * 111.00163 * 294.49777 * 5 3 2 7 7 C 1.52998 * 109.47169 * 175.60604 * 6 5 3 8 8 C 1.52996 * 109.47317 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47248 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00308 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99907 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00211 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00107 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47367 * 59.99599 * 13 11 9 15 15 H 1.48508 * 109.46982 * 299.99956 * 13 11 9 16 16 H 1.48498 * 109.47347 * 180.02562 * 13 11 9 17 17 C 1.53008 * 109.46639 * 176.19865 * 3 2 1 18 18 H 1.08996 * 110.75008 * 62.01910 * 17 3 2 19 19 C 1.55312 * 110.84318 * 185.71490 * 17 3 2 20 20 C 1.54948 * 100.93901 * 152.32111 * 19 17 3 21 21 O 1.43646 * 105.13573 * 323.55619 * 20 19 17 22 22 C 1.43235 * 109.97192 * 24.42719 * 21 20 19 23 23 H 1.08994 * 109.47722 * 176.84082 * 1 2 3 24 24 H 1.09009 * 109.47140 * 296.83792 * 1 2 3 25 25 H 1.09001 * 109.47543 * 56.83160 * 1 2 3 26 26 H 1.08999 * 109.46712 * 239.99598 * 2 1 3 27 27 H 1.09000 * 109.47006 * 120.00498 * 2 1 3 28 28 H 1.00903 * 111.00141 * 170.54740 * 5 3 2 29 29 H 1.08998 * 109.46779 * 55.60919 * 6 5 3 30 30 H 1.08989 * 109.47156 * 295.60729 * 6 5 3 31 31 H 1.09001 * 109.47408 * 60.00135 * 7 6 5 32 32 H 1.09003 * 109.47103 * 300.00271 * 7 6 5 33 33 H 1.09001 * 109.47024 * 59.99590 * 8 7 6 34 34 H 1.09003 * 109.47003 * 300.00023 * 8 7 6 35 35 H 0.97001 * 119.99731 * 359.97438 * 12 11 9 36 36 H 1.08994 * 111.12096 * 270.23953 * 19 17 3 37 37 H 1.08998 * 111.12262 * 34.40255 * 19 17 3 38 38 H 1.08996 * 110.30833 * 204.63870 * 20 19 17 39 39 H 1.09000 * 110.39433 * 82.51240 * 20 19 17 40 40 H 1.09002 * 109.82683 * 238.77278 * 22 21 20 41 41 H 1.09004 * 109.82885 * 117.80522 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9756 0.8540 5 7 1.6268 2.1079 -1.2427 6 6 2.2769 1.4955 -2.4091 7 6 1.7406 2.1402 -3.6888 8 6 2.4171 1.5020 -4.9036 9 6 1.8884 2.1366 -6.1641 10 1 1.1440 2.9168 -6.1047 11 6 2.3551 1.7212 -7.3932 12 7 3.2613 0.7708 -7.4656 13 14 1.7003 2.5083 -8.9556 14 1 1.9901 3.9646 -8.9353 15 1 0.2327 2.2968 -9.0389 16 1 2.3569 1.8888 -10.1347 17 6 3.5671 1.4434 0.0956 18 1 4.0084 0.9456 -0.7678 19 6 4.1107 2.8908 0.2425 20 6 5.4288 2.6329 1.0151 21 8 5.1306 1.5547 1.9162 22 6 4.0356 0.7825 1.4098 23 1 -0.3634 -1.0260 -0.0566 24 1 -0.3634 0.4640 0.9170 25 1 -0.3634 0.5622 -0.8602 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8152 3.0984 -1.2024 29 1 2.0641 0.4266 -2.4241 30 1 3.3539 1.6507 -2.3479 31 1 1.9534 3.2092 -3.6739 32 1 0.6634 1.9850 -3.7500 33 1 2.2040 0.4332 -4.9184 34 1 3.4944 1.6569 -4.8427 35 1 3.6016 0.3624 -6.6542 36 1 4.3075 3.3372 -0.7322 37 1 3.4283 3.5095 0.8253 38 1 5.7206 3.5226 1.5730 39 1 6.2221 2.3419 0.3264 40 1 3.2202 0.7787 2.1331 41 1 4.3626 -0.2387 1.2140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167262499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:03 Heat of formation + Delta-G solvation = -78.872075 kcal Electronic energy + Delta-G solvation = -17890.353275 eV Core-core repulsion = 15189.826300 eV Total energy + Delta-G solvation = -2700.526976 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03552 -37.42321 -34.45180 -32.57575 -31.98670 -30.23857 -29.47497 -26.26223 -24.59462 -23.03526 -22.57052 -21.48299 -20.72755 -19.34665 -17.06526 -16.69812 -16.43788 -15.76496 -14.98506 -14.44576 -14.20659 -13.79971 -13.71591 -13.51570 -13.39207 -12.80547 -12.77184 -12.22798 -12.06863 -11.67678 -11.56916 -11.32467 -11.05265 -11.03057 -10.79904 -10.71506 -10.62865 -10.40112 -10.11335 -9.80999 -9.71181 -9.70179 -8.52392 -8.31125 -8.21878 -6.34561 -4.03159 3.44713 3.46824 3.65520 3.68665 4.20033 4.36511 4.45077 4.56834 4.79780 4.95492 5.02482 5.07730 5.20291 5.23084 5.42676 5.45326 5.50837 5.52947 5.60689 5.64174 5.70740 5.74689 5.82377 5.91570 6.02353 6.03346 6.17122 6.32205 6.43730 6.58202 6.65985 6.79765 6.98029 7.23435 7.43839 7.51104 7.59583 8.24952 8.48622 8.90683 9.69120 11.06040 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.004628 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.582010 B = 6048.426665 C = 6589.195841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.100 3.900 4 H 0.079 0.921 5 N -0.678 5.678 6 C 0.053 3.947 7 C -0.099 4.099 8 C 0.009 3.991 9 C -0.600 4.600 10 H 0.048 0.952 11 C 0.013 3.987 12 N -0.915 5.915 13 Si 1.069 2.931 14 H -0.288 1.288 15 H -0.288 1.288 16 H -0.283 1.283 17 C -0.161 4.161 18 H 0.091 0.909 19 C -0.153 4.153 20 C 0.053 3.947 21 O -0.389 6.389 22 C 0.060 3.940 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.337 0.663 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.006 0.994 34 H 0.003 0.997 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 1.690 18.020 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.010 4.010 4 H 0.098 0.902 5 N -0.307 5.307 6 C -0.075 4.075 7 C -0.137 4.137 8 C -0.028 4.028 9 C -0.638 4.638 10 H 0.066 0.934 11 C -0.190 4.190 12 N -0.551 5.551 13 Si 0.897 3.103 14 H -0.215 1.215 15 H -0.214 1.214 16 H -0.208 1.208 17 C -0.181 4.181 18 H 0.109 0.891 19 C -0.191 4.191 20 C -0.024 4.024 21 O -0.308 6.308 22 C -0.017 4.017 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.021 0.979 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.578 1.249 16.481 16.538 hybrid contribution 0.764 0.403 1.533 1.760 sum 0.186 1.652 18.014 18.090 Atomic orbital electron populations 1.21645 0.95015 1.00997 1.02416 1.21632 0.97108 0.95251 1.01727 1.21585 0.89785 0.96177 0.93488 0.90243 1.60668 1.61263 1.07168 1.01562 1.22214 0.95458 0.99586 0.90272 1.21467 1.00456 0.98840 0.92909 1.19185 0.95093 0.95634 0.92893 1.22058 1.26348 1.23105 0.92316 0.93364 1.25858 0.95202 0.95971 1.01976 1.70788 1.27764 1.24239 1.32307 0.83552 0.75766 0.75522 0.75478 1.21486 1.21428 1.20787 1.23587 0.99436 0.96121 0.98967 0.89059 1.23311 0.97253 0.96903 1.01619 1.23339 0.96679 0.90084 0.92270 1.88372 1.52172 1.43185 1.47083 1.23161 0.89100 0.94950 0.94499 0.93548 0.93496 0.90995 0.91569 0.92178 0.84483 0.91271 0.95626 0.93612 0.92484 0.97598 0.97862 0.92209 0.89813 0.90261 0.89858 0.92182 0.91172 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.83 37.16 0.37 -1.26 16 2 C -0.12 -1.34 5.15 -26.73 -0.14 -1.48 16 3 C 0.10 1.12 1.91 -67.71 -0.13 0.99 16 4 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 5 N -0.68 -9.07 5.70 -106.73 -0.61 -9.68 16 6 C 0.05 0.87 4.82 -3.82 -0.02 0.85 16 7 C -0.10 -2.03 5.45 -26.73 -0.15 -2.18 16 8 C 0.01 0.24 4.28 -27.89 -0.12 0.13 16 9 C -0.60 -17.38 9.11 -34.44 -0.31 -17.69 16 10 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 11 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 12 N -0.91 -28.40 13.65 55.43 0.76 -27.64 16 13 Si 1.07 25.59 29.90 -169.99 -5.08 20.50 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.16 -1.77 2.02 -88.67 -0.18 -1.95 16 18 H 0.09 1.15 6.40 -51.93 -0.33 0.82 16 19 C -0.15 -1.56 6.04 -24.48 -0.15 -1.71 16 20 C 0.05 0.55 7.78 38.19 0.30 0.85 16 21 O -0.39 -4.85 11.36 -35.23 -0.40 -5.25 16 22 C 0.06 0.65 6.38 37.88 0.24 0.89 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 25 H 0.07 0.95 7.63 -51.93 -0.40 0.56 16 26 H 0.07 0.84 6.28 -51.93 -0.33 0.51 16 27 H 0.06 0.58 7.02 -51.93 -0.36 0.22 16 28 H 0.34 4.27 8.36 -39.29 -0.33 3.94 16 29 H 0.07 1.18 6.19 -51.93 -0.32 0.86 16 30 H 0.03 0.42 6.45 -51.94 -0.33 0.09 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 34 H 0.00 0.08 8.01 -51.93 -0.42 -0.33 16 35 H 0.27 8.27 7.22 -40.82 -0.29 7.98 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.69 7.52 -51.93 -0.39 0.30 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 318.29 15.07 4.80 4.80 Total: -1.00 -30.92 318.29 -8.27 -39.18 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.34 Total: 0.35 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -0.39 Total: -22.26 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.15 Total: -37.32 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.40 Total: -5.25 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.92 -8.27 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167262499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.690 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds