Wall clock time and date at job start Sun Mar 29 2020 23:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47161 * 2 1 4 4 H 1.09001 * 109.47036 * 56.20220 * 3 2 1 5 5 N 1.46894 * 109.47151 * 296.19592 * 3 2 1 6 6 C 1.46909 * 111.00163 * 294.49777 * 5 3 2 7 7 C 1.52998 * 109.47169 * 175.60604 * 6 5 3 8 8 C 1.52996 * 109.47317 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47248 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00308 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99907 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00211 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00107 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47367 * 59.99599 * 13 11 9 15 15 H 1.48508 * 109.46982 * 299.99956 * 13 11 9 16 16 H 1.48498 * 109.47347 * 180.02562 * 13 11 9 17 17 C 1.53008 * 109.46639 * 176.19865 * 3 2 1 18 18 H 1.08996 * 110.75008 * 62.01910 * 17 3 2 19 19 C 1.55312 * 110.84318 * 185.71490 * 17 3 2 20 20 C 1.54948 * 100.93901 * 152.32111 * 19 17 3 21 21 O 1.43646 * 105.13573 * 323.55619 * 20 19 17 22 22 C 1.43235 * 109.97192 * 24.42719 * 21 20 19 23 23 H 1.08994 * 109.47722 * 176.84082 * 1 2 3 24 24 H 1.09009 * 109.47140 * 296.83792 * 1 2 3 25 25 H 1.09001 * 109.47543 * 56.83160 * 1 2 3 26 26 H 1.08999 * 109.46712 * 239.99598 * 2 1 3 27 27 H 1.09000 * 109.47006 * 120.00498 * 2 1 3 28 28 H 1.00903 * 111.00141 * 170.54740 * 5 3 2 29 29 H 1.08998 * 109.46779 * 55.60919 * 6 5 3 30 30 H 1.08989 * 109.47156 * 295.60729 * 6 5 3 31 31 H 1.09001 * 109.47408 * 60.00135 * 7 6 5 32 32 H 1.09003 * 109.47103 * 300.00271 * 7 6 5 33 33 H 1.09001 * 109.47024 * 59.99590 * 8 7 6 34 34 H 1.09003 * 109.47003 * 300.00023 * 8 7 6 35 35 H 0.97001 * 119.99731 * 359.97438 * 12 11 9 36 36 H 1.08994 * 111.12096 * 270.23953 * 19 17 3 37 37 H 1.08998 * 111.12262 * 34.40255 * 19 17 3 38 38 H 1.08996 * 110.30833 * 204.63870 * 20 19 17 39 39 H 1.09000 * 110.39433 * 82.51240 * 20 19 17 40 40 H 1.09002 * 109.82683 * 238.77278 * 22 21 20 41 41 H 1.09004 * 109.82885 * 117.80522 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6221 1.9756 0.8540 5 7 1.6268 2.1079 -1.2427 6 6 2.2769 1.4955 -2.4091 7 6 1.7406 2.1402 -3.6888 8 6 2.4171 1.5020 -4.9036 9 6 1.8884 2.1366 -6.1641 10 1 1.1440 2.9168 -6.1047 11 6 2.3551 1.7212 -7.3932 12 7 3.2613 0.7708 -7.4656 13 14 1.7003 2.5083 -8.9556 14 1 1.9901 3.9646 -8.9353 15 1 0.2327 2.2968 -9.0389 16 1 2.3569 1.8888 -10.1347 17 6 3.5671 1.4434 0.0956 18 1 4.0084 0.9456 -0.7678 19 6 4.1107 2.8908 0.2425 20 6 5.4288 2.6329 1.0151 21 8 5.1306 1.5547 1.9162 22 6 4.0356 0.7825 1.4098 23 1 -0.3634 -1.0260 -0.0566 24 1 -0.3634 0.4640 0.9170 25 1 -0.3634 0.5622 -0.8602 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8152 3.0984 -1.2024 29 1 2.0641 0.4266 -2.4241 30 1 3.3539 1.6507 -2.3479 31 1 1.9534 3.2092 -3.6739 32 1 0.6634 1.9850 -3.7500 33 1 2.2040 0.4332 -4.9184 34 1 3.4944 1.6569 -4.8427 35 1 3.6016 0.3624 -6.6542 36 1 4.3075 3.3372 -0.7322 37 1 3.4283 3.5095 0.8253 38 1 5.7206 3.5226 1.5730 39 1 6.2221 2.3419 0.3264 40 1 3.2202 0.7787 2.1331 41 1 4.3626 -0.2387 1.2140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167262499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:03 Heat of formation + Delta-G solvation = -98.781953 kcal Electronic energy + Delta-G solvation = -17891.216632 eV Core-core repulsion = 15189.826300 eV Total energy + Delta-G solvation = -2701.390333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.94680 -38.50213 -36.31268 -34.23657 -32.89510 -31.75592 -30.33909 -27.93359 -25.81026 -24.65873 -23.57275 -22.49654 -22.32922 -20.39045 -18.88155 -18.03006 -17.39395 -16.80708 -16.01092 -15.71714 -15.60122 -15.47694 -15.09832 -14.80628 -14.30600 -14.24135 -13.85236 -13.68883 -13.40981 -13.04293 -12.65846 -12.52170 -12.34272 -12.32523 -12.02370 -11.99402 -11.91825 -11.82574 -11.57996 -11.45768 -11.33416 -10.66862 -10.56954 -10.55241 -9.34480 -8.70259 -6.40588 1.51937 1.60588 1.80079 2.56260 2.84638 3.14756 3.20020 3.43474 3.56534 3.94795 4.02516 4.13763 4.17283 4.19402 4.31897 4.38278 4.38864 4.55870 4.61184 4.68410 4.72358 4.79260 4.83831 4.85903 4.89979 4.94906 4.98265 5.11488 5.14813 5.16468 5.35991 5.42053 5.52958 5.54485 5.95599 5.96760 6.08608 6.17688 6.47724 6.57342 7.41703 8.70512 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.004628 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.582010 B = 6048.426665 C = 6589.195841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.106 3.894 4 H 0.099 0.901 5 N -0.676 5.676 6 C 0.072 3.928 7 C -0.085 4.085 8 C 0.010 3.990 9 C -0.619 4.619 10 H 0.050 0.950 11 C -0.040 4.040 12 N -0.939 5.939 13 Si 1.118 2.882 14 H -0.268 1.268 15 H -0.269 1.269 16 H -0.283 1.283 17 C -0.157 4.157 18 H 0.070 0.930 19 C -0.149 4.149 20 C 0.049 3.951 21 O -0.407 6.407 22 C 0.060 3.940 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.345 0.655 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.049 0.951 32 H 0.049 0.951 33 H -0.015 1.015 34 H -0.014 1.014 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 2.789 19.095 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C -0.004 4.004 4 H 0.117 0.883 5 N -0.306 5.306 6 C -0.058 4.058 7 C -0.123 4.123 8 C -0.027 4.027 9 C -0.657 4.657 10 H 0.068 0.932 11 C -0.237 4.237 12 N -0.576 5.576 13 Si 0.939 3.061 14 H -0.193 1.193 15 H -0.194 1.194 16 H -0.208 1.208 17 C -0.178 4.178 18 H 0.089 0.911 19 C -0.187 4.187 20 C -0.027 4.027 21 O -0.327 6.327 22 C -0.017 4.017 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.164 0.836 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.004 0.996 34 H 0.005 0.995 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.408 2.354 17.593 17.806 hybrid contribution 1.034 0.038 1.255 1.626 sum -0.374 2.392 18.848 19.002 Atomic orbital electron populations 1.21607 0.94949 1.01086 1.02133 1.21654 0.97115 0.95258 1.01750 1.21630 0.89950 0.96167 0.92682 0.88303 1.60574 1.60907 1.07672 1.01410 1.21836 0.95286 0.98846 0.89784 1.21243 0.99426 0.98811 0.92843 1.19132 0.94388 0.94631 0.94589 1.22515 1.26296 1.23163 0.93728 0.93165 1.27482 0.94633 0.95641 1.05977 1.70927 1.29349 1.25717 1.31615 0.82934 0.76162 0.75671 0.71371 1.19274 1.19395 1.20836 1.23482 0.99065 0.96716 0.98496 0.91112 1.23298 0.97416 0.96386 1.01558 1.23451 0.96670 0.90264 0.92309 1.88351 1.52767 1.43843 1.47775 1.23216 0.89230 0.94761 0.94458 0.93139 0.91938 0.93236 0.93544 0.90185 0.83649 0.92057 0.95698 0.93235 0.93200 0.99621 0.99544 0.93669 0.90336 0.88845 0.88147 0.92636 0.89638 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.83 71.98 0.71 -2.24 16 2 C -0.12 -2.50 5.15 30.59 0.16 -2.34 16 3 C 0.11 2.15 1.91 44.92 0.09 2.24 16 4 H 0.10 1.73 8.12 -2.39 -0.02 1.71 16 5 N -0.68 -17.16 5.70 -491.57 -2.80 -19.96 16 6 C 0.07 2.34 4.82 86.30 0.42 2.76 16 7 C -0.09 -3.52 5.45 30.59 0.17 -3.36 16 8 C 0.01 0.54 4.28 29.85 0.13 0.67 16 9 C -0.62 -36.18 9.11 25.60 0.23 -35.94 16 10 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 11 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 12 N -0.94 -59.33 13.65 21.45 0.29 -59.04 16 13 Si 1.12 50.82 29.90 68.60 2.05 52.87 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 C -0.16 -3.24 2.02 -9.53 -0.02 -3.26 16 18 H 0.07 1.77 6.40 -2.39 -0.02 1.75 16 19 C -0.15 -2.77 6.04 32.05 0.19 -2.58 16 20 C 0.05 0.95 7.78 72.65 0.56 1.51 16 21 O -0.41 -9.49 11.36 -148.98 -1.69 -11.18 16 22 C 0.06 1.18 6.38 72.45 0.46 1.65 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 1.26 7.63 -2.39 -0.02 1.24 16 26 H 0.05 1.16 6.28 -2.39 -0.01 1.14 16 27 H 0.08 1.36 7.02 -2.39 -0.02 1.34 16 28 H 0.34 8.04 8.36 -89.69 -0.75 7.29 16 29 H 0.06 2.12 6.19 -2.39 -0.01 2.10 16 30 H 0.02 0.82 6.45 -2.39 -0.02 0.81 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 33 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 34 H -0.01 -0.77 8.01 -2.39 -0.02 -0.79 16 35 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.49 8.03 -2.39 -0.02 1.47 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.09 1.42 7.52 -2.39 -0.02 1.41 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -66.46 318.29 1.74 -64.72 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.33 Total: 15.40 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 3.56 Total: -42.82 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -2.51 Total: -79.00 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -1.69 Total: -11.18 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -66.46 1.74 -64.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167262499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.063 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds