Wall clock time and date at job start Sun Mar 29 2020 22:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47496 * 2 1 4 4 H 1.09006 * 109.47033 * 58.03167 * 3 2 1 5 5 N 1.46902 * 109.47501 * 298.03195 * 3 2 1 6 6 C 1.46898 * 110.99907 * 306.07463 * 5 3 2 7 7 C 1.52995 * 109.47270 * 173.24669 * 6 5 3 8 8 C 1.52995 * 109.47279 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.47187 * 179.97438 * 8 7 6 10 10 H 1.08000 * 119.99833 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99852 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99878 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99791 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47229 * 90.00503 * 13 11 9 15 15 H 1.48501 * 109.47197 * 210.00389 * 13 11 9 16 16 H 1.48500 * 109.47295 * 330.00199 * 13 11 9 17 17 C 1.52994 * 109.47480 * 178.03098 * 3 2 1 18 18 H 1.09000 * 110.33297 * 296.01924 * 17 3 2 19 19 C 1.54477 * 110.37747 * 173.76429 * 17 3 2 20 20 C 1.54510 * 104.06614 * 217.18871 * 19 17 3 21 21 C 1.54478 * 104.05879 * 0.02562 * 20 19 17 22 22 O 1.44430 * 110.37133 * 58.26240 * 17 3 2 23 23 H 1.08999 * 109.46491 * 305.02346 * 1 2 3 24 24 H 1.09005 * 109.47009 * 65.01894 * 1 2 3 25 25 H 1.08992 * 109.47614 * 185.02203 * 1 2 3 26 26 H 1.09005 * 109.46539 * 240.00340 * 2 1 3 27 27 H 1.08999 * 109.47466 * 120.00753 * 2 1 3 28 28 H 1.00902 * 111.00326 * 182.11747 * 5 3 2 29 29 H 1.08998 * 109.47092 * 293.24846 * 6 5 3 30 30 H 1.08999 * 109.47182 * 53.24791 * 6 5 3 31 31 H 1.09007 * 109.47267 * 299.99930 * 7 6 5 32 32 H 1.09001 * 109.47591 * 59.99653 * 7 6 5 33 33 H 1.08998 * 109.47187 * 299.99656 * 8 7 6 34 34 H 1.09003 * 109.47609 * 60.00129 * 8 7 6 35 35 H 0.97006 * 119.99365 * 180.02562 * 12 11 9 36 36 H 1.08999 * 110.50842 * 335.83672 * 19 17 3 37 37 H 1.09002 * 110.50889 * 98.40466 * 19 17 3 38 38 H 1.09000 * 110.50573 * 118.64296 * 20 19 17 39 39 H 1.08996 * 110.51074 * 241.35472 * 20 19 17 40 40 H 1.09003 * 110.36984 * 142.81222 * 21 20 19 41 41 H 1.09001 * 110.37380 * 265.02846 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6482 1.9664 0.8719 5 7 1.5897 2.1212 -1.2225 6 6 1.9777 1.3626 -2.4191 7 6 1.3503 2.0068 -3.6570 8 6 1.7549 1.2171 -4.9034 9 6 1.1363 1.8513 -6.1226 10 1 0.5170 2.7300 -6.0188 11 6 1.3620 1.3103 -7.3706 12 7 2.1166 0.2406 -7.4969 13 14 0.5948 2.0960 -8.8817 14 1 1.5201 3.1191 -9.4315 15 1 0.3438 1.0529 -9.9085 16 1 -0.6894 2.7404 -8.5066 17 6 3.5692 1.4427 0.0496 18 1 3.9180 1.0050 0.9849 19 6 4.1122 2.8804 -0.1067 20 6 5.3905 2.7087 -0.9575 21 6 5.4682 1.1875 -1.2151 22 8 4.1089 0.7174 -1.0768 23 1 -0.3632 0.5898 0.8416 24 1 -0.3633 0.4340 -0.9316 25 1 -0.3634 -1.0236 0.0900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.9428 3.0656 -1.2628 29 1 3.0632 1.3687 -2.5171 30 1 1.6269 0.3347 -2.3273 31 1 0.2647 2.0007 -3.5590 32 1 1.7010 3.0347 -3.7489 33 1 2.8404 1.2236 -5.0012 34 1 1.4045 0.1890 -4.8118 35 1 2.2756 -0.1397 -8.3750 36 1 3.3884 3.5075 -0.6272 37 1 4.3536 3.3055 0.8676 38 1 5.2985 3.2509 -1.8986 39 1 6.2661 3.0480 -0.4040 40 1 5.8379 0.9916 -2.2216 41 1 6.1113 0.7098 -0.4759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182292999.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:44 Heat of formation + Delta-G solvation = -62.397480 kcal Electronic energy + Delta-G solvation = -18356.940797 eV Core-core repulsion = 15657.128213 eV Total energy + Delta-G solvation = -2699.812583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01854 -36.63353 -33.92732 -32.27201 -32.09233 -30.61109 -29.07833 -26.22260 -24.98877 -22.88242 -22.23006 -20.99364 -20.04233 -19.50534 -16.76095 -16.41000 -16.15114 -15.70546 -14.77607 -14.44918 -14.10172 -13.92705 -13.51349 -13.30086 -12.90085 -12.32502 -12.23007 -12.08819 -11.79823 -11.50805 -11.46973 -11.17359 -10.95933 -10.77980 -10.69249 -10.57804 -10.46199 -10.41721 -10.14763 -9.74844 -9.47474 -9.19475 -8.92929 -8.25385 -7.78219 -5.90900 -3.92385 3.36983 3.42868 3.47086 3.89018 4.47028 4.52826 4.59268 4.69549 4.85565 5.03775 5.14872 5.24030 5.29517 5.44536 5.45819 5.54638 5.64856 5.77315 5.79077 5.85158 5.91396 5.99224 6.03007 6.08338 6.21154 6.37454 6.52064 6.60998 6.72555 6.87145 6.95117 7.03211 7.31881 7.56635 7.79982 7.83357 7.99656 8.11972 8.55407 9.15434 9.70891 11.20488 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025236 B = 0.005621 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.263399 B = 4980.092779 C = 5543.586924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C 0.095 3.905 4 H 0.086 0.914 5 N -0.678 5.678 6 C 0.046 3.954 7 C -0.106 4.106 8 C 0.025 3.975 9 C -0.516 4.516 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.890 3.110 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.039 3.961 18 H 0.063 0.937 19 C -0.155 4.155 20 C -0.154 4.154 21 C 0.040 3.960 22 O -0.351 6.351 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.332 0.668 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 2.917 17.799 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.016 4.016 4 H 0.104 0.896 5 N -0.309 5.309 6 C -0.082 4.082 7 C -0.144 4.144 8 C -0.013 4.013 9 C -0.555 4.555 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.537 5.537 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.021 4.021 18 H 0.081 0.919 19 C -0.193 4.193 20 C -0.191 4.191 21 C -0.037 4.037 22 O -0.270 6.270 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.115 2.368 17.552 18.183 hybrid contribution 0.852 0.746 -0.781 1.376 sum 4.967 3.114 16.771 17.766 Atomic orbital electron populations 1.21644 0.95206 1.00389 1.02672 1.21574 0.96623 0.95070 1.02244 1.21720 0.88964 0.96382 0.94537 0.89614 1.60780 1.63005 1.05326 1.01824 1.22472 0.99737 0.97604 0.88382 1.21611 0.99587 0.98746 0.94431 1.19023 0.96399 0.95206 0.90649 1.21304 1.30094 1.12265 0.91797 0.92820 1.25028 0.95437 0.95063 0.99024 1.69981 1.38568 1.21728 1.23378 0.86629 0.79701 0.78960 0.82915 1.20786 1.21285 1.19897 1.23933 0.97049 0.90778 0.90313 0.91900 1.23020 0.97821 0.97880 1.00554 1.22904 0.97836 0.97482 1.00922 1.23390 0.85269 0.92836 1.02175 1.89342 1.24923 1.63965 1.48764 0.93513 0.91228 0.93729 0.90454 0.92640 0.84814 0.92430 0.91384 0.93257 0.94300 0.96928 0.96760 0.93159 0.90329 0.90836 0.90409 0.90951 0.88910 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.71 37.16 0.36 -1.47 16 2 C -0.12 -1.54 4.78 -26.73 -0.13 -1.67 16 3 C 0.09 1.19 2.74 -67.72 -0.19 1.01 16 4 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 5 N -0.68 -10.12 5.79 -106.73 -0.62 -10.74 16 6 C 0.05 0.84 4.48 -3.83 -0.02 0.83 16 7 C -0.11 -2.32 5.47 -26.74 -0.15 -2.47 16 8 C 0.02 0.67 4.97 -27.88 -0.14 0.53 16 9 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 10 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.79 13.29 55.43 0.74 -27.05 16 13 Si 0.89 22.28 29.54 -169.99 -5.02 17.25 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.04 0.47 3.08 -25.96 -0.08 0.39 16 18 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 19 C -0.15 -1.61 6.52 -25.16 -0.16 -1.77 16 20 C -0.15 -1.62 7.09 -25.16 -0.18 -1.80 16 21 C 0.04 0.48 7.63 37.93 0.29 0.77 16 22 O -0.35 -5.14 7.24 -35.23 -0.26 -5.39 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.06 7.81 -51.93 -0.41 0.65 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 1.20 5.67 -51.93 -0.29 0.91 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.33 4.65 6.38 -39.29 -0.25 4.40 16 29 H 0.06 1.11 5.44 -51.93 -0.28 0.83 16 30 H 0.07 1.33 5.78 -51.93 -0.30 1.03 16 31 H 0.05 1.11 8.14 -51.92 -0.42 0.68 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 0.86 5.60 -51.93 -0.29 0.57 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -31.18 314.93 -8.49 -39.68 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.28 Total: 1.16 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -0.80 Total: -19.66 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.12 Total: -37.79 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.26 Total: -5.39 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.18 -8.49 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182292999.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.720 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds