Wall clock time and date at job start Sun Mar 29 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42891 * 109.47481 * 2 1 4 4 C 1.42903 * 114.00094 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84956 * 338.30754 * 4 3 2 6 6 C 1.53784 * 113.61467 * 109.50875 * 4 3 2 7 7 C 1.53776 * 87.08141 * 89.19865 * 6 4 3 8 8 H 1.09001 * 113.61390 * 140.06144 * 7 6 4 9 9 N 1.46498 * 113.61480 * 270.88259 * 7 6 4 10 10 C 1.36939 * 120.00246 * 255.49778 * 9 7 6 11 11 H 1.08003 * 119.99523 * 359.97438 * 10 9 7 12 12 C 1.38800 * 120.00302 * 179.72690 * 10 9 7 13 13 N 1.31619 * 120.00272 * 180.27484 * 12 10 9 14 14 Si 1.86806 * 120.00022 * 0.27052 * 12 10 9 15 15 H 1.48504 * 109.46696 * 90.00218 * 14 12 10 16 16 H 1.48496 * 109.47197 * 210.00245 * 14 12 10 17 17 H 1.48499 * 109.46879 * 330.00488 * 14 12 10 18 18 C 1.53781 * 87.08337 * 25.43118 * 7 6 4 19 19 C 1.53002 * 113.61369 * 89.11321 * 18 7 6 20 20 C 1.53003 * 109.47122 * 63.35276 * 19 18 7 21 21 C 1.52997 * 113.61617 * 220.01381 * 18 7 6 22 22 C 1.52996 * 109.47446 * 174.84281 * 21 18 7 23 23 H 1.08999 * 109.47490 * 59.99472 * 1 2 3 24 24 H 1.09003 * 109.47665 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46883 * 299.99763 * 1 2 3 26 26 H 1.09005 * 109.46460 * 239.99931 * 2 1 3 27 27 H 1.09001 * 109.46998 * 120.00706 * 2 1 3 28 28 H 1.08999 * 113.60898 * 334.64819 * 6 4 3 29 29 H 1.08994 * 113.60927 * 203.74842 * 6 4 3 30 30 H 0.96999 * 120.00263 * 75.49678 * 9 7 6 31 31 H 0.97002 * 120.00573 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47409 * 183.34591 * 19 18 7 33 33 H 1.08997 * 109.47598 * 303.35696 * 19 18 7 34 34 H 1.09003 * 109.47226 * 62.77510 * 20 19 18 35 35 H 1.08994 * 109.47568 * 182.77865 * 20 19 18 36 36 H 1.09001 * 109.47030 * 302.78110 * 20 19 18 37 37 H 1.08998 * 109.47648 * 294.84472 * 21 18 7 38 38 H 1.09001 * 109.46962 * 54.84596 * 21 18 7 39 39 H 1.09013 * 109.47052 * 306.05213 * 22 21 18 40 40 H 1.08998 * 109.47245 * 66.04648 * 22 21 18 41 41 H 1.09002 * 109.47481 * 186.05428 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.9266 0.5629 0.3703 6 6 4.0073 1.9778 -1.3289 7 6 3.8441 3.3956 -0.7563 8 1 4.6728 4.0617 -0.9967 9 7 2.5354 3.9931 -1.0327 10 6 2.4136 4.9602 -1.9946 11 1 3.2825 5.2827 -2.5491 12 6 1.1727 5.5223 -2.2605 13 7 1.0547 6.4479 -3.1887 14 14 -0.3301 4.9649 -1.3009 15 1 -0.4843 5.8089 -0.0888 16 1 -1.5388 5.0972 -2.1533 17 1 -0.1615 3.5457 -0.8978 18 6 3.9481 2.7590 0.6397 19 6 5.3829 2.6562 1.1611 20 6 5.9659 4.0607 1.3302 21 6 2.9847 3.3641 1.6626 22 6 3.0750 2.5809 2.9738 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.3686 1.7782 -2.1893 29 1 5.0456 1.6911 -1.4955 30 1 1.7551 3.7038 -0.5345 31 1 0.1874 6.8405 -3.3748 32 1 5.3840 2.1442 2.1233 33 1 5.9887 2.0947 0.4499 34 1 5.3896 4.6056 2.0780 35 1 7.0038 3.9866 1.6544 36 1 5.9193 4.5904 0.3787 37 1 3.2522 4.4053 1.8422 38 1 1.9662 3.3118 1.2777 39 1 2.9128 1.5213 2.7761 40 1 4.0624 2.7214 3.4136 41 1 2.3143 2.9420 3.6659 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187044624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:54 Heat of formation + Delta-G solvation = -23.415860 kcal Electronic energy + Delta-G solvation = -19157.414162 eV Core-core repulsion = 16459.291949 eV Total energy + Delta-G solvation = -2698.122214 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10669 -36.55448 -33.88436 -32.38688 -31.20242 -30.77329 -29.82029 -25.22671 -24.68216 -23.04382 -22.40731 -22.05805 -20.59889 -18.02396 -17.20027 -16.12590 -15.50001 -15.32334 -15.02097 -14.15170 -13.95989 -13.39331 -13.19639 -12.76637 -12.68580 -12.47927 -12.35640 -12.25706 -11.90388 -11.68563 -11.55629 -11.09034 -11.02390 -10.98238 -10.93059 -10.73613 -10.46244 -10.17363 -9.95185 -9.79502 -9.47485 -9.23101 -8.85249 -8.74949 -7.11666 -5.68402 -3.01214 3.46594 3.53014 3.56779 3.86700 4.69863 4.90619 5.03231 5.16541 5.21920 5.34482 5.39514 5.48122 5.50191 5.51501 5.60844 5.63379 5.70583 5.77958 5.81347 5.89638 5.99527 6.05384 6.07504 6.14594 6.20746 6.22019 6.30811 6.34650 6.40059 6.53783 6.61064 6.74086 6.86981 6.98282 7.01827 7.71222 8.12822 8.52774 9.34851 10.07669 10.29915 11.50072 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.010897 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.235091 B = 2568.927906 C = 3340.303035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.079 3.921 5 H 0.056 0.944 6 C -0.199 4.199 7 C 0.189 3.811 8 H 0.067 0.933 9 N -0.723 5.723 10 C -0.238 4.238 11 H 0.089 0.911 12 C 0.005 3.995 13 N -0.937 5.937 14 Si 0.873 3.127 15 H -0.285 1.285 16 H -0.293 1.293 17 H -0.266 1.266 18 C -0.097 4.097 19 C -0.093 4.093 20 C -0.150 4.150 21 C -0.098 4.098 22 C -0.145 4.145 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.371 0.629 31 H 0.258 0.742 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 -12.658 10.722 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.271 6.271 4 C 0.020 3.980 5 H 0.074 0.926 6 C -0.240 4.240 7 C 0.077 3.923 8 H 0.085 0.915 9 N -0.364 5.364 10 C -0.368 4.368 11 H 0.106 0.894 12 C -0.190 4.190 13 N -0.585 5.585 14 Si 0.703 3.297 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.191 1.191 18 C -0.098 4.098 19 C -0.131 4.131 20 C -0.207 4.207 21 C -0.136 4.136 22 C -0.202 4.202 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.207 0.793 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.588 -12.299 10.530 17.128 hybrid contribution -1.056 -0.695 0.481 1.352 sum 4.531 -12.994 11.011 17.624 Atomic orbital electron populations 1.21739 0.94217 1.01567 1.03398 1.22400 0.95290 0.84751 0.99213 1.87960 1.19856 1.24852 1.94444 1.23010 0.81270 0.96349 0.97338 0.92563 1.24315 0.99627 1.02303 0.97766 1.21015 0.89535 0.91163 0.90561 0.91469 1.42545 1.04277 1.45030 1.44512 1.19109 0.95626 1.11019 1.11071 0.89355 1.24606 0.97087 0.98677 0.98661 1.69702 1.23722 1.30408 1.34644 0.86675 0.83902 0.79327 0.79809 1.21203 1.22004 1.19109 1.22677 0.94638 0.95683 0.96848 1.21219 0.93723 0.97732 1.00400 1.21748 0.99447 0.96902 1.02636 1.21165 1.00113 0.98782 0.93504 1.21757 1.00574 1.00168 0.97730 0.91643 0.91607 0.92066 0.93846 0.94140 0.90806 0.90663 0.79305 0.93225 0.92026 0.92137 0.92622 0.93361 0.91845 0.91979 0.91036 0.93399 0.93232 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 37.15 0.38 -1.64 16 2 C 0.06 0.85 6.51 37.15 0.24 1.10 16 3 O -0.35 -6.30 7.73 -35.23 -0.27 -6.57 16 4 C 0.08 1.27 3.53 -25.92 -0.09 1.18 16 5 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 6 C -0.20 -3.52 7.36 -25.92 -0.19 -3.71 16 7 C 0.19 3.78 3.81 -67.12 -0.26 3.52 16 8 H 0.07 1.36 6.55 -51.93 -0.34 1.02 16 9 N -0.72 -17.74 4.53 -52.64 -0.24 -17.98 16 10 C -0.24 -6.89 10.46 -15.06 -0.16 -7.05 16 11 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 12 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 13 N -0.94 -30.09 13.97 55.49 0.78 -29.32 16 14 Si 0.87 22.95 27.74 -169.99 -4.72 18.24 16 15 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 16 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 17 H -0.27 -6.73 6.51 56.52 0.37 -6.36 16 18 C -0.10 -1.56 0.50 -153.70 -0.08 -1.64 16 19 C -0.09 -1.21 5.01 -26.73 -0.13 -1.34 16 20 C -0.15 -1.93 9.59 37.16 0.36 -1.58 16 21 C -0.10 -1.65 4.39 -26.73 -0.12 -1.76 16 22 C -0.14 -1.96 9.24 37.16 0.34 -1.62 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.13 7.62 -51.93 -0.40 0.74 16 30 H 0.37 9.20 3.02 -40.82 -0.12 9.08 16 31 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 32 H 0.06 0.72 6.41 -51.93 -0.33 0.39 16 33 H 0.06 0.73 7.32 -51.93 -0.38 0.35 16 34 H 0.05 0.73 7.23 -51.93 -0.38 0.35 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 37 H 0.06 1.08 7.34 -51.93 -0.38 0.70 16 38 H 0.07 1.40 5.57 -51.93 -0.29 1.11 16 39 H 0.05 0.63 7.92 -51.92 -0.41 0.22 16 40 H 0.05 0.60 6.81 -51.93 -0.35 0.24 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -31.75 312.60 -6.64 -38.39 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.10 Total: 7.02 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 0.20 Total: -14.49 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.54 Total: -47.29 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.27 Total: -6.57 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.72 Total: 18.24 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.75 -6.64 -38.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.971 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds