Wall clock time and date at job start Sun Mar 29 2020 22:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42891 * 109.47481 * 2 1 4 4 C 1.42903 * 114.00094 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84956 * 338.30754 * 4 3 2 6 6 C 1.53784 * 113.61467 * 109.50875 * 4 3 2 7 7 C 1.53776 * 87.08141 * 89.19865 * 6 4 3 8 8 H 1.09001 * 113.61390 * 140.06144 * 7 6 4 9 9 N 1.46498 * 113.61480 * 270.88259 * 7 6 4 10 10 C 1.36939 * 120.00246 * 255.49778 * 9 7 6 11 11 H 1.08003 * 119.99523 * 359.97438 * 10 9 7 12 12 C 1.38800 * 120.00302 * 179.72690 * 10 9 7 13 13 N 1.31619 * 120.00272 * 180.27484 * 12 10 9 14 14 Si 1.86806 * 120.00022 * 0.27052 * 12 10 9 15 15 H 1.48504 * 109.46696 * 90.00218 * 14 12 10 16 16 H 1.48496 * 109.47197 * 210.00245 * 14 12 10 17 17 H 1.48499 * 109.46879 * 330.00488 * 14 12 10 18 18 C 1.53781 * 87.08337 * 25.43118 * 7 6 4 19 19 C 1.53002 * 113.61369 * 89.11321 * 18 7 6 20 20 C 1.53003 * 109.47122 * 63.35276 * 19 18 7 21 21 C 1.52997 * 113.61617 * 220.01381 * 18 7 6 22 22 C 1.52996 * 109.47446 * 174.84281 * 21 18 7 23 23 H 1.08999 * 109.47490 * 59.99472 * 1 2 3 24 24 H 1.09003 * 109.47665 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46883 * 299.99763 * 1 2 3 26 26 H 1.09005 * 109.46460 * 239.99931 * 2 1 3 27 27 H 1.09001 * 109.46998 * 120.00706 * 2 1 3 28 28 H 1.08999 * 113.60898 * 334.64819 * 6 4 3 29 29 H 1.08994 * 113.60927 * 203.74842 * 6 4 3 30 30 H 0.96999 * 120.00263 * 75.49678 * 9 7 6 31 31 H 0.97002 * 120.00573 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47409 * 183.34591 * 19 18 7 33 33 H 1.08997 * 109.47598 * 303.35696 * 19 18 7 34 34 H 1.09003 * 109.47226 * 62.77510 * 20 19 18 35 35 H 1.08994 * 109.47568 * 182.77865 * 20 19 18 36 36 H 1.09001 * 109.47030 * 302.78110 * 20 19 18 37 37 H 1.08998 * 109.47648 * 294.84472 * 21 18 7 38 38 H 1.09001 * 109.46962 * 54.84596 * 21 18 7 39 39 H 1.09013 * 109.47052 * 306.05213 * 22 21 18 40 40 H 1.08998 * 109.47245 * 66.04648 * 22 21 18 41 41 H 1.09002 * 109.47481 * 186.05428 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.9266 0.5629 0.3703 6 6 4.0073 1.9778 -1.3289 7 6 3.8441 3.3956 -0.7563 8 1 4.6728 4.0617 -0.9967 9 7 2.5354 3.9931 -1.0327 10 6 2.4136 4.9602 -1.9946 11 1 3.2825 5.2827 -2.5491 12 6 1.1727 5.5223 -2.2605 13 7 1.0547 6.4479 -3.1887 14 14 -0.3301 4.9649 -1.3009 15 1 -0.4843 5.8089 -0.0888 16 1 -1.5388 5.0972 -2.1533 17 1 -0.1615 3.5457 -0.8978 18 6 3.9481 2.7590 0.6397 19 6 5.3829 2.6562 1.1611 20 6 5.9659 4.0607 1.3302 21 6 2.9847 3.3641 1.6626 22 6 3.0750 2.5809 2.9738 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5139 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.3686 1.7782 -2.1893 29 1 5.0456 1.6911 -1.4955 30 1 1.7551 3.7038 -0.5345 31 1 0.1874 6.8405 -3.3748 32 1 5.3840 2.1442 2.1233 33 1 5.9887 2.0947 0.4499 34 1 5.3896 4.6056 2.0780 35 1 7.0038 3.9866 1.6544 36 1 5.9193 4.5904 0.3787 37 1 3.2522 4.4053 1.8422 38 1 1.9662 3.3118 1.2777 39 1 2.9128 1.5213 2.7761 40 1 4.0624 2.7214 3.4136 41 1 2.3143 2.9420 3.6659 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187044624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:53 Heat of formation + Delta-G solvation = -43.257815 kcal Electronic energy + Delta-G solvation = -19158.274574 eV Core-core repulsion = 16459.291949 eV Total energy + Delta-G solvation = -2698.982625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.46456 -37.79830 -35.75529 -33.93401 -32.58262 -32.27309 -31.22509 -26.58191 -26.35042 -24.16558 -23.94026 -23.42127 -21.98670 -19.99868 -18.72726 -17.42557 -16.78382 -16.70479 -16.56011 -15.93753 -15.21691 -14.86035 -14.74050 -14.46588 -13.90835 -13.79241 -13.64402 -13.46536 -13.31021 -13.00793 -12.90523 -12.72395 -12.59699 -12.19263 -12.18023 -12.12580 -11.97628 -11.82678 -11.70349 -11.23932 -11.15643 -10.79452 -10.58267 -10.12441 -9.19977 -8.02706 -5.31227 1.34068 1.35541 1.46671 2.47310 2.70533 3.27366 3.53144 3.77228 3.87157 4.12153 4.13320 4.22238 4.27728 4.30540 4.46677 4.50775 4.51240 4.60574 4.64967 4.73357 4.84618 4.90494 4.93454 5.00795 5.03361 5.12693 5.15854 5.20282 5.23427 5.30946 5.37645 5.42376 5.55181 5.61768 5.72444 5.81088 6.24068 6.54954 7.12116 7.94330 8.13698 9.19419 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017417 B = 0.010897 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.235091 B = 2568.927906 C = 3340.303035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.386 6.386 4 C 0.086 3.914 5 H 0.093 0.907 6 C -0.192 4.192 7 C 0.159 3.841 8 H 0.054 0.946 9 N -0.728 5.728 10 C -0.221 4.221 11 H 0.057 0.943 12 C -0.062 4.062 13 N -0.984 5.984 14 Si 0.940 3.060 15 H -0.280 1.280 16 H -0.295 1.295 17 H -0.254 1.254 18 C -0.081 4.081 19 C -0.088 4.088 20 C -0.150 4.150 21 C -0.099 4.099 22 C -0.136 4.136 23 H 0.038 0.962 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.372 0.628 31 H 0.256 0.744 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 -15.462 13.294 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.305 6.305 4 C 0.028 3.972 5 H 0.111 0.889 6 C -0.233 4.233 7 C 0.049 3.951 8 H 0.072 0.928 9 N -0.370 5.370 10 C -0.352 4.352 11 H 0.075 0.925 12 C -0.253 4.253 13 N -0.636 5.636 14 Si 0.769 3.231 15 H -0.206 1.206 16 H -0.222 1.222 17 H -0.179 1.179 18 C -0.082 4.082 19 C -0.126 4.126 20 C -0.207 4.207 21 C -0.137 4.137 22 C -0.193 4.193 23 H 0.057 0.943 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.207 0.793 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.523 -15.152 13.135 21.087 hybrid contribution -1.216 0.178 -0.357 1.280 sum 5.307 -14.975 12.778 20.388 Atomic orbital electron populations 1.21781 0.94046 1.03201 1.01847 1.22642 0.95552 0.83414 1.00722 1.87939 1.20745 1.27303 1.94502 1.23014 0.81053 0.97542 0.95616 0.88906 1.24240 1.01105 1.00265 0.97679 1.21414 0.86943 0.92056 0.94656 0.92786 1.42511 1.06301 1.44593 1.43596 1.19105 0.94427 1.10958 1.10697 0.92537 1.25325 1.00168 0.99503 1.00288 1.69864 1.24282 1.32454 1.36993 0.85596 0.79884 0.79384 0.78280 1.20642 1.22222 1.17903 1.22608 0.96741 0.94713 0.94155 1.21267 0.91278 0.98042 1.01966 1.21743 1.01055 0.96729 1.01212 1.21121 0.98348 0.98729 0.95480 1.21681 1.01992 0.99923 0.95691 0.94265 0.88434 0.92463 0.93391 0.91348 0.93881 0.87550 0.79269 0.93514 0.89357 0.90597 0.93203 0.90793 0.94308 0.93528 0.94249 0.92526 0.91160 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 10.28 71.98 0.74 -2.97 16 2 C 0.05 1.34 6.51 71.98 0.47 1.81 16 3 O -0.39 -13.00 7.73 -148.98 -1.15 -14.15 16 4 C 0.09 2.51 3.53 31.12 0.11 2.62 16 5 H 0.09 2.09 7.85 -2.39 -0.02 2.07 16 6 C -0.19 -6.53 7.36 31.12 0.23 -6.30 16 7 C 0.16 6.34 3.81 45.52 0.17 6.51 16 8 H 0.05 2.25 6.55 -2.39 -0.02 2.24 16 9 N -0.73 -36.46 4.53 -320.46 -1.45 -37.91 16 10 C -0.22 -13.27 10.46 84.03 0.88 -12.39 16 11 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 12 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 13 N -0.98 -65.69 13.97 21.65 0.30 -65.39 16 14 Si 0.94 49.00 27.74 68.60 1.90 50.90 16 15 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 16 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 17 H -0.25 -12.60 6.51 99.48 0.65 -11.95 16 18 C -0.08 -2.42 0.50 -51.66 -0.03 -2.45 16 19 C -0.09 -1.95 5.01 30.60 0.15 -1.79 16 20 C -0.15 -3.52 9.59 71.98 0.69 -2.83 16 21 C -0.10 -3.16 4.39 30.59 0.13 -3.03 16 22 C -0.14 -3.19 9.24 71.98 0.67 -2.52 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 2.90 7.62 -2.39 -0.02 2.88 16 30 H 0.37 18.57 3.02 -92.71 -0.28 18.29 16 31 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 32 H 0.09 1.57 6.41 -2.39 -0.02 1.55 16 33 H 0.08 1.49 7.32 -2.39 -0.02 1.47 16 34 H 0.05 1.21 7.23 -2.39 -0.02 1.19 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.09 6.55 -2.39 -0.02 1.07 16 37 H 0.05 1.60 7.34 -2.39 -0.02 1.58 16 38 H 0.04 1.51 5.57 -2.39 -0.01 1.50 16 39 H 0.06 1.24 7.92 -2.38 -0.02 1.22 16 40 H 0.07 1.37 6.81 -2.39 -0.02 1.35 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -71.88 312.60 4.93 -66.94 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.65 Total: 26.32 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 4.68 Total: -26.72 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -1.15 Total: -103.30 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.15 Total: -14.15 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.90 Total: 50.90 kcal Total: -71.88 4.93 -66.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.684 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds