Wall clock time and date at job start Sun Mar 29 2020 22:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46927 * 2 1 4 4 C 1.42908 * 114.00145 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.84543 * 338.30929 * 4 3 2 6 6 C 1.53779 * 113.61290 * 109.50502 * 4 3 2 7 7 C 1.53779 * 87.07883 * 139.98441 * 6 4 3 8 8 H 1.09001 * 113.61357 * 219.93499 * 7 6 4 9 9 N 1.46498 * 113.61609 * 89.11642 * 7 6 4 10 10 C 1.36939 * 120.00026 * 104.50388 * 9 7 6 11 11 H 1.08000 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.38810 * 119.99987 * 179.97438 * 10 9 7 13 13 N 1.31627 * 120.00075 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00118 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47571 * 60.00082 * 14 12 10 16 16 H 1.48506 * 109.47521 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47299 * 299.99820 * 14 12 10 18 18 C 1.53773 * 87.08245 * 334.56428 * 7 6 4 19 19 C 1.53005 * 113.61717 * 270.88801 * 18 7 6 20 20 C 1.53001 * 109.46838 * 281.78975 * 19 18 7 21 21 C 1.52999 * 113.61707 * 139.97918 * 18 7 6 22 22 C 1.52997 * 109.47428 * 196.89049 * 21 18 7 23 23 H 1.08997 * 109.46846 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46606 * 299.99677 * 1 2 3 25 25 H 1.08992 * 109.47348 * 59.99605 * 1 2 3 26 26 H 1.09000 * 109.47113 * 240.00395 * 2 1 3 27 27 H 1.08994 * 109.47848 * 120.00311 * 2 1 3 28 28 H 1.09003 * 113.61275 * 254.52877 * 6 4 3 29 29 H 1.08998 * 113.62094 * 25.34939 * 6 4 3 30 30 H 0.97005 * 120.00012 * 284.50061 * 9 7 6 31 31 H 0.97000 * 120.00039 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47117 * 41.79109 * 19 18 7 33 33 H 1.08995 * 109.46937 * 161.79118 * 19 18 7 34 34 H 1.08997 * 109.46939 * 174.42930 * 20 19 18 35 35 H 1.09003 * 109.47325 * 294.43148 * 20 19 18 36 36 H 1.09001 * 109.47147 * 54.43001 * 20 19 18 37 37 H 1.09004 * 109.47222 * 316.89800 * 21 18 7 38 38 H 1.09003 * 109.46830 * 76.89326 * 21 18 7 39 39 H 1.08992 * 109.47464 * 295.33757 * 22 21 18 40 40 H 1.08995 * 109.46785 * 55.34249 * 22 21 18 41 41 H 1.09001 * 109.47001 * 175.33718 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9266 0.5632 0.3703 6 6 4.0072 1.9781 -1.3289 7 6 4.9914 2.8078 -0.4877 8 1 5.1658 3.8092 -0.8813 9 7 6.2325 2.0985 -0.1672 10 6 7.3898 2.4100 -0.8296 11 1 7.3877 3.1790 -1.5880 12 6 8.5659 1.7383 -0.5256 13 7 8.5686 0.8015 0.3991 14 14 10.1447 2.1637 -1.4287 15 1 10.4777 3.5924 -1.1976 16 1 11.2496 1.3096 -0.9235 17 1 9.9622 1.9270 -2.8833 18 6 3.9461 2.7603 0.6391 19 6 2.9375 3.9098 0.5885 20 6 3.5820 5.1787 1.1502 21 6 4.5524 2.5607 2.0296 22 6 3.4605 2.1109 3.0024 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.4886 1.2044 -1.9271 29 1 3.3050 2.5819 -1.9037 30 1 6.2345 1.4082 0.5143 31 1 9.3903 0.3319 0.6113 32 1 2.6350 4.0825 -0.4442 33 1 2.0626 3.6519 1.1852 34 1 2.8998 6.0193 1.0236 35 1 3.7946 5.0397 2.2102 36 1 4.5108 5.3811 0.6168 37 1 5.3313 1.7998 1.9805 38 1 4.9833 3.5000 2.3762 39 1 2.7238 2.9063 3.1148 40 1 2.9733 1.2168 2.6134 41 1 3.9065 1.8890 3.9719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187044640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:56 Heat of formation + Delta-G solvation = -31.941814 kcal Electronic energy + Delta-G solvation = -18743.152522 eV Core-core repulsion = 16044.660595 eV Total energy + Delta-G solvation = -2698.491927 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93452 -36.59966 -33.86474 -32.39890 -30.95739 -30.88961 -29.40862 -25.08009 -24.42132 -22.93519 -22.74591 -22.22388 -20.54143 -17.62630 -17.05423 -16.29341 -15.40361 -15.22837 -14.81984 -14.14686 -13.98490 -13.40958 -13.07029 -12.70460 -12.56476 -12.51102 -12.38721 -12.14991 -11.80422 -11.54138 -11.45433 -11.02767 -10.96313 -10.93636 -10.73518 -10.71862 -10.40343 -10.14409 -10.10925 -9.89958 -9.50289 -9.28753 -8.85081 -8.73256 -6.96891 -5.79103 -3.07567 3.43611 3.48143 3.48929 4.06583 4.57139 5.01050 5.12494 5.19760 5.27035 5.36353 5.48393 5.50793 5.57047 5.67901 5.73823 5.75924 5.80344 5.87351 5.93817 5.94597 6.01473 6.13716 6.16617 6.21659 6.31436 6.35086 6.41573 6.48407 6.56484 6.63375 6.71569 6.79579 6.95691 7.08625 7.12688 7.68833 7.74015 8.40542 9.50941 10.08360 10.42609 11.43456 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.006799 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.780074 B = 4116.992647 C = 4480.234309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.078 3.922 5 H 0.080 0.920 6 C -0.190 4.190 7 C 0.176 3.824 8 H 0.066 0.934 9 N -0.704 5.704 10 C -0.240 4.240 11 H 0.071 0.929 12 C -0.012 4.012 13 N -0.934 5.934 14 Si 0.908 3.092 15 H -0.286 1.286 16 H -0.291 1.291 17 H -0.286 1.286 18 C -0.085 4.085 19 C -0.083 4.083 20 C -0.152 4.152 21 C -0.107 4.107 22 C -0.144 4.144 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 1.809 1.740 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.295 6.295 4 C 0.020 3.980 5 H 0.098 0.902 6 C -0.231 4.231 7 C 0.064 3.936 8 H 0.084 0.916 9 N -0.344 5.344 10 C -0.371 4.371 11 H 0.089 0.911 12 C -0.208 4.208 13 N -0.582 5.582 14 Si 0.739 3.261 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.213 1.213 18 C -0.087 4.087 19 C -0.121 4.121 20 C -0.209 4.209 21 C -0.145 4.145 22 C -0.202 4.202 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.221 0.779 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.763 2.018 1.652 14.008 hybrid contribution 1.067 -0.464 -0.319 1.206 sum -12.696 1.554 1.333 12.860 Atomic orbital electron populations 1.21720 0.94473 1.01639 1.02717 1.22391 0.94879 0.85162 0.99706 1.87896 1.21901 1.24958 1.94706 1.23769 0.79304 0.97486 0.97417 0.90168 1.24302 1.00030 1.01710 0.97098 1.21005 0.85406 0.94891 0.92294 0.91579 1.42257 1.03261 1.43530 1.45367 1.19236 0.86630 1.16186 1.15070 0.91089 1.24734 0.97906 0.98867 0.99272 1.69648 1.27240 1.26984 1.34332 0.86255 0.83197 0.77537 0.79117 1.21219 1.21723 1.21280 1.22674 0.96209 0.94042 0.95735 1.21017 0.97101 0.93079 1.00914 1.21810 1.00811 0.97079 1.01197 1.21405 0.97585 1.02208 0.93304 1.21727 0.98922 1.00855 0.98668 0.91706 0.92162 0.92133 0.93844 0.93902 0.91575 0.90785 0.77877 0.93417 0.92224 0.91893 0.93628 0.92812 0.92388 0.90818 0.91748 0.93285 0.93278 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.74 6.51 37.16 0.24 0.98 16 3 O -0.38 -5.97 9.45 -35.23 -0.33 -6.30 16 4 C 0.08 1.35 2.84 -25.92 -0.07 1.27 16 5 H 0.08 1.49 7.85 -51.93 -0.41 1.09 16 6 C -0.19 -3.54 7.36 -25.92 -0.19 -3.73 16 7 C 0.18 3.57 3.86 -67.12 -0.26 3.32 16 8 H 0.07 1.36 7.61 -51.93 -0.40 0.97 16 9 N -0.70 -17.40 4.84 -52.64 -0.26 -17.65 16 10 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 13 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 14 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.08 -1.45 0.51 -153.70 -0.08 -1.53 16 19 C -0.08 -1.26 4.32 -26.73 -0.12 -1.38 16 20 C -0.15 -2.13 9.23 37.16 0.34 -1.78 16 21 C -0.11 -1.87 4.75 -26.73 -0.13 -1.99 16 22 C -0.14 -2.14 9.55 37.16 0.35 -1.79 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.28 7.62 -51.93 -0.40 0.88 16 30 H 0.39 10.02 5.98 -40.82 -0.24 9.77 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 0.91 7.32 -51.93 -0.38 0.53 16 33 H 0.06 0.93 7.22 -51.93 -0.38 0.56 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.74 6.83 -51.93 -0.35 0.38 16 36 H 0.06 0.88 7.56 -51.93 -0.39 0.49 16 37 H 0.07 1.49 6.03 -51.93 -0.31 1.17 16 38 H 0.06 1.13 6.50 -51.93 -0.34 0.79 16 39 H 0.05 0.67 7.28 -51.93 -0.38 0.30 16 40 H 0.05 0.73 7.49 -51.93 -0.39 0.34 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -28.76 319.47 -7.13 -35.89 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.29 Total: 8.12 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 0.23 Total: -15.01 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.47 Total: -44.76 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.33 Total: -6.30 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.76 -7.13 -35.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.947 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds