Wall clock time and date at job start Sun Mar 29 2020 22:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46927 * 2 1 4 4 C 1.42908 * 114.00145 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.84543 * 338.30929 * 4 3 2 6 6 C 1.53779 * 113.61290 * 109.50502 * 4 3 2 7 7 C 1.53779 * 87.07883 * 139.98441 * 6 4 3 8 8 H 1.09001 * 113.61357 * 219.93499 * 7 6 4 9 9 N 1.46498 * 113.61609 * 89.11642 * 7 6 4 10 10 C 1.36939 * 120.00026 * 104.50388 * 9 7 6 11 11 H 1.08000 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.38810 * 119.99987 * 179.97438 * 10 9 7 13 13 N 1.31627 * 120.00075 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00118 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47571 * 60.00082 * 14 12 10 16 16 H 1.48506 * 109.47521 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47299 * 299.99820 * 14 12 10 18 18 C 1.53773 * 87.08245 * 334.56428 * 7 6 4 19 19 C 1.53005 * 113.61717 * 270.88801 * 18 7 6 20 20 C 1.53001 * 109.46838 * 281.78975 * 19 18 7 21 21 C 1.52999 * 113.61707 * 139.97918 * 18 7 6 22 22 C 1.52997 * 109.47428 * 196.89049 * 21 18 7 23 23 H 1.08997 * 109.46846 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46606 * 299.99677 * 1 2 3 25 25 H 1.08992 * 109.47348 * 59.99605 * 1 2 3 26 26 H 1.09000 * 109.47113 * 240.00395 * 2 1 3 27 27 H 1.08994 * 109.47848 * 120.00311 * 2 1 3 28 28 H 1.09003 * 113.61275 * 254.52877 * 6 4 3 29 29 H 1.08998 * 113.62094 * 25.34939 * 6 4 3 30 30 H 0.97005 * 120.00012 * 284.50061 * 9 7 6 31 31 H 0.97000 * 120.00039 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47117 * 41.79109 * 19 18 7 33 33 H 1.08995 * 109.46937 * 161.79118 * 19 18 7 34 34 H 1.08997 * 109.46939 * 174.42930 * 20 19 18 35 35 H 1.09003 * 109.47325 * 294.43148 * 20 19 18 36 36 H 1.09001 * 109.47147 * 54.43001 * 20 19 18 37 37 H 1.09004 * 109.47222 * 316.89800 * 21 18 7 38 38 H 1.09003 * 109.46830 * 76.89326 * 21 18 7 39 39 H 1.08992 * 109.47464 * 295.33757 * 22 21 18 40 40 H 1.08995 * 109.46785 * 55.34249 * 22 21 18 41 41 H 1.09001 * 109.47001 * 175.33718 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9266 0.5632 0.3703 6 6 4.0072 1.9781 -1.3289 7 6 4.9914 2.8078 -0.4877 8 1 5.1658 3.8092 -0.8813 9 7 6.2325 2.0985 -0.1672 10 6 7.3898 2.4100 -0.8296 11 1 7.3877 3.1790 -1.5880 12 6 8.5659 1.7383 -0.5256 13 7 8.5686 0.8015 0.3991 14 14 10.1447 2.1637 -1.4287 15 1 10.4777 3.5924 -1.1976 16 1 11.2496 1.3096 -0.9235 17 1 9.9622 1.9270 -2.8833 18 6 3.9461 2.7603 0.6391 19 6 2.9375 3.9098 0.5885 20 6 3.5820 5.1787 1.1502 21 6 4.5524 2.5607 2.0296 22 6 3.4605 2.1109 3.0024 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 4.4886 1.2044 -1.9271 29 1 3.3050 2.5819 -1.9037 30 1 6.2345 1.4082 0.5143 31 1 9.3903 0.3319 0.6113 32 1 2.6350 4.0825 -0.4442 33 1 2.0626 3.6519 1.1852 34 1 2.8998 6.0193 1.0236 35 1 3.7946 5.0397 2.2102 36 1 4.5108 5.3811 0.6168 37 1 5.3313 1.7998 1.9805 38 1 4.9833 3.5000 2.3762 39 1 2.7238 2.9063 3.1148 40 1 2.9733 1.2168 2.6134 41 1 3.9065 1.8890 3.9719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187044640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:55 Heat of formation + Delta-G solvation = -48.220352 kcal Electronic energy + Delta-G solvation = -18743.858412 eV Core-core repulsion = 16044.660595 eV Total energy + Delta-G solvation = -2699.197817 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39975 -37.87930 -35.68913 -33.95851 -32.35271 -32.09336 -31.07289 -26.52371 -26.22062 -24.34814 -24.12485 -23.43400 -22.02665 -19.44797 -18.70478 -17.69244 -16.83097 -16.52227 -16.37327 -15.81642 -15.29575 -15.21990 -14.52598 -14.04075 -13.90273 -13.72577 -13.67918 -13.43206 -13.09956 -12.86291 -12.79898 -12.76025 -12.62194 -12.28008 -12.16204 -12.10522 -11.96111 -11.90734 -11.68467 -11.31657 -11.13001 -10.79393 -10.74213 -10.10104 -8.99253 -7.95024 -5.23154 1.47249 1.49829 1.55852 2.55423 2.83745 3.36938 3.61515 3.69408 3.85889 4.11828 4.14511 4.24100 4.28229 4.36023 4.45041 4.53496 4.54207 4.61796 4.63401 4.73301 4.83900 4.94651 4.97035 5.02206 5.07923 5.14249 5.16933 5.21384 5.24420 5.30249 5.33875 5.42521 5.50328 5.56556 5.64743 5.73588 6.27471 6.43300 7.33621 8.09276 8.33107 9.28185 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.006799 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.780074 B = 4116.992647 C = 4480.234309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.046 3.954 3 O -0.376 6.376 4 C 0.089 3.911 5 H 0.062 0.938 6 C -0.182 4.182 7 C 0.160 3.840 8 H 0.062 0.938 9 N -0.715 5.715 10 C -0.242 4.242 11 H 0.075 0.925 12 C -0.072 4.072 13 N -0.969 5.969 14 Si 0.972 3.028 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.280 1.280 18 C -0.071 4.071 19 C -0.077 4.077 20 C -0.148 4.148 21 C -0.104 4.104 22 C -0.135 4.135 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.376 0.624 31 H 0.251 0.749 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.559 2.703 1.684 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 O -0.295 6.295 4 C 0.031 3.969 5 H 0.080 0.920 6 C -0.223 4.223 7 C 0.050 3.950 8 H 0.080 0.920 9 N -0.354 5.354 10 C -0.374 4.374 11 H 0.093 0.907 12 C -0.264 4.264 13 N -0.620 5.620 14 Si 0.801 3.199 15 H -0.204 1.204 16 H -0.222 1.222 17 H -0.206 1.206 18 C -0.072 4.072 19 C -0.115 4.115 20 C -0.206 4.206 21 C -0.142 4.142 22 C -0.193 4.193 23 H 0.105 0.895 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.210 0.790 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.533 2.940 1.575 15.887 hybrid contribution 1.515 -0.742 -0.326 1.718 sum -14.018 2.197 1.248 14.244 Atomic orbital electron populations 1.21706 0.92004 1.03200 1.02915 1.22646 0.96844 0.83868 0.99732 1.87879 1.20354 1.26680 1.94629 1.23445 0.80341 0.96853 0.96234 0.91989 1.24191 0.99698 1.00969 0.97437 1.21224 0.84839 0.94365 0.94619 0.91973 1.42357 1.04174 1.43814 1.45087 1.19612 0.87687 1.15494 1.14611 0.90727 1.25509 1.01008 0.99327 1.00560 1.69807 1.27576 1.28415 1.36173 0.85234 0.79249 0.77360 0.78046 1.20360 1.22208 1.20592 1.22559 0.95291 0.94928 0.94431 1.21007 0.96617 0.92450 1.01431 1.21780 1.00489 0.97350 1.00941 1.21325 0.97643 1.00946 0.94286 1.21646 0.98231 1.01213 0.98179 0.89523 0.91797 0.92043 0.94156 0.93671 0.93735 0.88927 0.78967 0.94011 0.92009 0.90739 0.91250 0.92592 0.94067 0.94257 0.92075 0.91553 0.93486 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 1.15 6.51 71.98 0.47 1.61 16 3 O -0.38 -11.32 9.45 -148.98 -1.41 -12.72 16 4 C 0.09 3.06 2.84 31.12 0.09 3.15 16 5 H 0.06 2.36 7.85 -2.39 -0.02 2.34 16 6 C -0.18 -6.75 7.36 31.12 0.23 -6.52 16 7 C 0.16 6.53 3.86 45.51 0.18 6.71 16 8 H 0.06 2.56 7.61 -2.39 -0.02 2.55 16 9 N -0.72 -36.29 4.84 -320.46 -1.55 -37.84 16 10 C -0.24 -13.53 9.98 84.03 0.84 -12.69 16 11 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 12 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 13 N -0.97 -59.30 13.06 21.65 0.28 -59.01 16 14 Si 0.97 46.33 29.55 68.60 2.03 48.35 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 18 C -0.07 -2.37 0.51 -51.66 -0.03 -2.40 16 19 C -0.08 -2.16 4.32 30.60 0.13 -2.03 16 20 C -0.15 -3.83 9.23 71.98 0.66 -3.17 16 21 C -0.10 -3.61 4.75 30.59 0.15 -3.46 16 22 C -0.14 -3.80 9.55 71.98 0.69 -3.11 16 23 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 3.07 7.62 -2.39 -0.02 3.05 16 30 H 0.38 20.37 5.98 -92.70 -0.55 19.82 16 31 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.06 1.72 7.32 -2.39 -0.02 1.70 16 33 H 0.07 1.96 7.22 -2.39 -0.02 1.94 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.41 6.83 -2.39 -0.02 1.40 16 36 H 0.04 1.19 7.56 -2.39 -0.02 1.17 16 37 H 0.04 1.63 6.03 -2.39 -0.01 1.62 16 38 H 0.06 2.13 6.50 -2.39 -0.02 2.11 16 39 H 0.07 1.64 7.28 -2.39 -0.02 1.62 16 40 H 0.05 1.33 7.49 -2.39 -0.02 1.31 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -61.74 319.47 4.39 -57.35 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.43 Total: 31.34 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 4.61 Total: -27.47 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -1.27 Total: -96.85 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.41 Total: -12.72 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -61.74 4.39 -57.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.134 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds