Wall clock time and date at job start Sun Mar 29 2020 22:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42890 * 109.47482 * 2 1 4 4 C 1.42898 * 114.00223 * 179.97438 * 3 2 1 5 5 H 1.09007 * 112.84961 * 18.80672 * 4 3 2 6 6 C 1.53785 * 113.61856 * 247.49811 * 4 3 2 7 7 C 1.53780 * 87.07878 * 270.88045 * 6 4 3 8 8 H 1.09005 * 113.69033 * 89.13024 * 7 6 4 9 9 N 1.46499 * 113.61494 * 220.01398 * 7 6 4 10 10 C 1.36940 * 120.00173 * 252.50485 * 9 7 6 11 11 H 1.07999 * 120.00017 * 359.97438 * 10 9 7 12 12 C 1.38804 * 119.99941 * 180.02562 * 10 9 7 13 13 N 1.31624 * 120.00326 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00104 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47263 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47269 * 59.99308 * 14 12 10 17 17 H 1.48497 * 109.46828 * 299.99576 * 14 12 10 18 18 C 1.53776 * 87.08492 * 334.56558 * 7 6 4 19 19 C 1.53002 * 113.61443 * 139.97917 * 18 7 6 20 20 C 1.53004 * 109.46890 * 64.94702 * 19 18 7 21 21 C 1.52991 * 113.61494 * 270.88436 * 18 7 6 22 22 C 1.53005 * 109.47495 * 174.76024 * 21 18 7 23 23 H 1.08993 * 109.47112 * 59.99452 * 1 2 3 24 24 H 1.08995 * 109.47635 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46724 * 299.99866 * 1 2 3 26 26 H 1.08997 * 109.46908 * 239.99887 * 2 1 3 27 27 H 1.09000 * 109.46993 * 120.00239 * 2 1 3 28 28 H 1.08997 * 113.61382 * 156.32884 * 6 4 3 29 29 H 1.08998 * 113.61076 * 25.43068 * 6 4 3 30 30 H 0.96997 * 119.99843 * 72.49847 * 9 7 6 31 31 H 0.97005 * 119.99458 * 0.02562 * 13 12 10 32 32 H 1.08998 * 109.47367 * 184.94698 * 19 18 7 33 33 H 1.08998 * 109.47344 * 304.94877 * 19 18 7 34 34 H 1.08997 * 109.46978 * 64.31362 * 20 19 18 35 35 H 1.09002 * 109.46605 * 184.30429 * 20 19 18 36 36 H 1.08990 * 109.47244 * 304.31278 * 20 19 18 37 37 H 1.09000 * 109.47404 * 294.76000 * 21 18 7 38 38 H 1.09000 * 109.47232 * 54.75574 * 21 18 7 39 39 H 1.08990 * 109.47437 * 185.23770 * 22 21 18 40 40 H 1.09004 * 109.46666 * 305.23990 * 22 21 18 41 41 H 1.09001 * 109.46797 * 65.23653 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4309 1.4599 0.0006 5 1 3.9281 0.5454 -0.3229 6 6 4.0020 2.0463 1.3025 7 6 3.8393 3.4326 0.6569 8 1 2.8648 3.8872 0.8354 9 7 4.9518 4.3440 0.9358 10 6 4.7779 5.3925 1.7994 11 1 3.8206 5.5477 2.2746 12 6 5.8319 6.2564 2.0632 13 7 6.9985 6.0676 1.4838 14 14 5.5946 7.6871 3.2407 15 1 6.8620 8.4529 3.3510 16 1 5.2119 7.1688 4.5787 17 1 4.5212 8.5765 2.7289 18 6 3.9491 2.7249 -0.7039 19 6 2.9885 3.2752 -1.7601 20 6 3.3601 4.7241 -2.0820 21 6 5.3857 2.5973 -1.2142 22 6 5.3984 1.7696 -2.5010 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.0400 1.7699 1.4874 29 1 3.3604 1.8905 2.1698 30 1 5.8115 4.2048 0.5089 31 1 7.1216 5.3249 0.8720 32 1 3.0597 2.6722 -2.6653 33 1 1.9684 3.2380 -1.3781 34 1 4.3510 4.7529 -2.5351 35 1 2.6307 5.1404 -2.7767 36 1 3.3634 5.3109 -1.1635 37 1 5.7890 3.5896 -1.4166 38 1 5.9972 2.1038 -0.4588 39 1 6.4285 1.6000 -2.8139 40 1 4.9106 0.8115 -2.3215 41 1 4.8647 2.3078 -3.2844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187044659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:58 Heat of formation + Delta-G solvation = -31.277837 kcal Electronic energy + Delta-G solvation = -18784.968226 eV Core-core repulsion = 16086.505091 eV Total energy + Delta-G solvation = -2698.463134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.04371 -36.74819 -33.99471 -32.56086 -31.03108 -30.84226 -29.31255 -25.10374 -24.28209 -23.10207 -22.59734 -22.25090 -20.72606 -17.78841 -17.22190 -16.39378 -15.57810 -15.41167 -14.65676 -14.15480 -13.96806 -13.58818 -13.32003 -12.92179 -12.80586 -12.56591 -12.49283 -11.93380 -11.80159 -11.58874 -11.36763 -11.23886 -11.02207 -10.89488 -10.67762 -10.65516 -10.37500 -10.05402 -9.97478 -9.83822 -9.49897 -9.03252 -8.92701 -8.73740 -6.93337 -6.04626 -3.02960 3.55368 3.58685 3.75999 3.77796 4.72693 4.92388 5.00981 5.12536 5.16632 5.27397 5.38299 5.41833 5.46270 5.55250 5.63022 5.69887 5.72518 5.80477 5.88929 5.92637 6.02577 6.07091 6.11318 6.15576 6.19553 6.25323 6.36655 6.44119 6.47824 6.60952 6.66779 6.77364 6.97082 6.99714 7.08417 7.56881 7.89107 8.81435 9.29674 10.16243 10.32630 11.43529 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.006964 C = 0.006241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.565228 B = 4019.439151 C = 4485.214356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.362 6.362 4 C 0.071 3.929 5 H 0.062 0.938 6 C -0.187 4.187 7 C 0.191 3.809 8 H 0.079 0.921 9 N -0.722 5.722 10 C -0.328 4.328 11 H 0.063 0.937 12 C -0.046 4.046 13 N -0.945 5.945 14 Si 1.078 2.922 15 H -0.286 1.286 16 H -0.296 1.296 17 H -0.296 1.296 18 C -0.090 4.090 19 C -0.096 4.096 20 C -0.149 4.149 21 C -0.097 4.097 22 C -0.148 4.148 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.369 0.631 31 H 0.253 0.747 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -11.718 -6.424 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.281 6.281 4 C 0.013 3.987 5 H 0.080 0.920 6 C -0.228 4.228 7 C 0.079 3.921 8 H 0.097 0.903 9 N -0.361 5.361 10 C -0.459 4.459 11 H 0.081 0.919 12 C -0.243 4.243 13 N -0.591 5.591 14 Si 0.909 3.091 15 H -0.211 1.211 16 H -0.224 1.224 17 H -0.223 1.223 18 C -0.092 4.092 19 C -0.133 4.133 20 C -0.206 4.206 21 C -0.135 4.135 22 C -0.205 4.205 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.204 0.796 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.346 -10.145 -5.584 14.274 hybrid contribution -0.376 -1.766 -0.741 1.952 sum -8.722 -11.911 -6.325 16.061 Atomic orbital electron populations 1.21728 0.94112 1.01779 1.03102 1.22437 0.95229 0.84700 0.99560 1.87870 1.20431 1.25176 1.94615 1.23076 0.80540 0.97013 0.98107 0.91978 1.24297 1.00214 1.01747 0.96549 1.21457 0.92570 0.87730 0.90324 0.90331 1.42451 1.09600 1.30969 1.53119 1.20101 0.99054 1.05805 1.20959 0.91861 1.25706 0.92983 1.02431 1.03171 1.70893 1.23701 1.32624 1.31903 0.83266 0.75199 0.75544 0.75081 1.21135 1.22390 1.22336 1.22686 0.94752 0.95020 0.96766 1.21258 0.98988 0.95875 0.97225 1.21729 1.00113 0.96768 1.02005 1.21171 0.94796 1.00915 0.96573 1.21786 1.00890 0.99695 0.98170 0.91963 0.91529 0.91871 0.93893 0.93785 0.90138 0.92175 0.79639 0.93534 0.93163 0.91560 0.93349 0.94157 0.91175 0.90659 0.92051 0.93176 0.93424 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.69 6.50 37.16 0.24 0.94 16 3 O -0.36 -5.66 8.89 -35.23 -0.31 -5.97 16 4 C 0.07 1.14 3.66 -25.91 -0.09 1.04 16 5 H 0.06 0.90 7.28 -51.92 -0.38 0.53 16 6 C -0.19 -3.48 7.36 -25.92 -0.19 -3.68 16 7 C 0.19 3.99 3.05 -67.12 -0.20 3.78 16 8 H 0.08 1.77 8.06 -51.93 -0.42 1.35 16 9 N -0.72 -17.97 5.29 -52.64 -0.28 -18.25 16 10 C -0.33 -9.27 9.97 -15.06 -0.15 -9.42 16 11 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 12 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 13 N -0.95 -29.26 13.70 55.49 0.76 -28.50 16 14 Si 1.08 26.28 29.92 -169.99 -5.09 21.19 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 18 C -0.09 -1.54 0.51 -153.70 -0.08 -1.62 16 19 C -0.10 -1.56 4.83 -26.73 -0.13 -1.69 16 20 C -0.15 -2.56 9.56 37.16 0.36 -2.20 16 21 C -0.10 -1.59 3.76 -26.73 -0.10 -1.70 16 22 C -0.15 -1.98 9.27 37.16 0.34 -1.64 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.53 7.61 -51.93 -0.40 1.14 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.37 9.38 4.83 -40.82 -0.20 9.18 16 31 H 0.25 7.72 6.77 -40.82 -0.28 7.44 16 32 H 0.05 0.74 6.47 -51.93 -0.34 0.40 16 33 H 0.07 1.11 7.14 -51.93 -0.37 0.74 16 34 H 0.05 0.83 7.25 -51.93 -0.38 0.45 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.42 7.47 -51.93 -0.39 1.04 16 37 H 0.07 1.39 6.61 -51.93 -0.34 1.05 16 38 H 0.06 1.04 7.31 -51.93 -0.38 0.66 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.59 7.47 -51.93 -0.39 0.20 16 41 H 0.05 0.73 6.80 -51.93 -0.35 0.37 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -30.48 317.42 -7.05 -37.52 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.19 Total: 7.95 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 0.28 Total: -18.73 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.48 Total: -46.75 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.31 Total: -5.97 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.09 Total: 21.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.48 -7.05 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187044659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.245 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds